Phylogenetically identified
new D. melanogaster genes and coding exons
Around 2000 new D melanogaster genes and exons were identified using
phylogenetic comparison of protein coding region matches.
Newly predicted exons in D.mel, outside of and inside of known genes,
were selected, and blast-compared to other species. Dmel predicted
exons are classified as valid if they show significant similarity and
a high synonymous substitution rate (low Ka_Ks) in one or more other
species.
About 1800 new exons were found outside of known gene regions, and 300 inside
known gene regions. Classification as new gene or new exon of existing
genes is not yet done. This is a preliminary rather than exhaustive
search of new Dmel genes. Additional new exons can likely be found
by including Dmel-sibling gene predictions. Numbers following each location are the bitscore, match identity%, and Ka_Ks ratio.
| ID | dmel | dsec | dsim | dyak | dere | dana | dpse | dmoj |
|---|
| texon4343 |
4 |
scaffold_40 165,96%,0 |
chr4 165,96%,0 |
chr4 165,96%,0 |
scaffold_4512 165,96%,0 |
scaffold_13034 133,92%,0.08 |
NA |
scaffold_6498 101,88%,0.05 |
| texon4344 |
4 |
scaffold_40 285,99%,0 |
chr4 285,99%,0 |
chr4 232,95%,0.1 |
scaffold_4512 234,95%,0 |
scaffold_13034 58,85%,0.05 |
NA |
NA |
| texon4345 |
4 |
scaffold_40 456,98%,0 |
chr4 454,97%,0 |
chr4 408,95%,0.12 |
scaffold_4512 392,95%,0.04 |
scaffold_13034 214,85%,0.04 |
NA |
scaffold_6498 79,85%,0.04 |
| texon4346 |
4 |
scaffold_40 178,97%,0 |
chr4 178,97%,0 |
chr4 155,94%,0 |
scaffold_4512 172,97%,0 |
scaffold_13034 60,83%,0.08 |
NA |
NA |
| texon4347 |
4 |
scaffold_40 244,99%,0 |
chr4 244,99%,0 |
chr4 234,98%,0.5 |
scaffold_4512 226,97%,1 |
scaffold_13034 77,84%,0.07 |
U 44,100%,0 |
NA |
| texon4348 |
4 |
scaffold_40 287,97%,0.5 |
NA |
chr4 159,95%,0.5 |
scaffold_4512 157,94%,0.5 |
scaffold_13034 63,97%,0 |
NA |
NA |
| texon4349 |
4 |
scaffold_40 577,97%,0.06 |
NA |
chr4 440,91%,0.13 |
scaffold_4512 472,92%,0.29 |
scaffold_13034 60,88%,0 |
NA |
NA |
| texon4350 |
4 |
scaffold_40 206,96%,0 |
NA |
chr4 167,92%,0.06 |
scaffold_4512 182,94%,0.08 |
scaffold_13034 61,84%,0 |
5_groupMISC 65,85%,0.11 |
NA |
| texon4351 |
4 |
scaffold_40 739,96%,0.66 |
NA |
chr4 414,87%,0.6 |
scaffold_4512 478,89%,1.06 |
NA |
NA |
NA |
| texon4355 |
4 |
scaffold_40 285,97%,0 |
chr4 293,98%,0 |
chr4 260,95%,0.08 |
scaffold_4512 299,98%,0.5 |
NA |
5_groupMISC 97,86%,0.12 |
scaffold_6498 77,84%,0.07 |
| texon4356 |
4 |
scaffold_40 424,97%,0.08 |
chr4 416,96%,0.07 |
chr4 369,94%,0.03 |
scaffold_4512 353,93%,0 |
scaffold_13034 75,80%,0.05 |
5_groupMISC 121,83%,0.03 |
NA |
| texon4357 |
4 |
scaffold_40 252,96%,0.5 |
chr4 252,96%,0.5 |
chr4 141,86%,0.8 |
scaffold_4512 133,86%,0.9 |
NA |
NA |
NA |
| texon4358 |
4 |
scaffold_40 918,95%,1.12 |
chr4 950,96%,1.07 |
chr4 611,89%,0.83 |
scaffold_4512 396,91%,0.66 |
NA |
5_groupMISC 69,84%,0.2 |
NA |
| texon4359 |
4 |
scaffold_40 480,96%,0.12 |
chr4 456,95%,0.12 |
chr4 325,89%,0.33 |
scaffold_4512 353,90%,0.36 |
NA |
NA |
NA |
| texon4361 |
4 |
scaffold_40 1057,97%,0.1 |
chr4 1065,97%,0.11 |
chr4 961,95%,0.15 |
scaffold_4512 1001,96%,0.13 |
scaffold_13089 250,80%,0.06 |
5_groupMISC 280,81%,0.08 |
scaffold_6498 65,81%,0.09 |
| texon4362 |
4 |
scaffold_40 1116,98%,0.05 |
NA |
chr4 997,95%,12 |
scaffold_4512 1013,96%,11.12 |
scaffold_13089 365,82%,0.03 |
5_groupMISC 105,85%,0.06 |
scaffold_6498 319,82%,0.07 |
| texon10771 |
NA |
scaffold_2 167,90%,1 |
NA |
chr3L 149,88%,0.83 |
scaffold_4784 125,88%,0.8 |
NA |
NA |
NA |
| texon11762 |
NA |
scaffold_10 121,91%,0.83 |
NA |
NA |
NA |
NA |
NA |
NA |
|