Drosophila gene prediction assessment

Recently Evolved Genes Identified From Drosophila yakuba and D. erecta Accessory Gland Expressed Sequence Tags
David J. Begun, Heather A. Lindfors, Melissa E. Thompson and Alisha K. Holloway
Section of Evolution and Ecology, University of California, Davis, California 95616
Genetics, Vol. 172, 1675-1681, March 2006, Copyright 2006 doi:10.1534/genetics.105.050336

Assessment: Eye-ball method. Use the web links in the "match link" column to view annotations at the site of these BLAST-located coding sequence of new genes. To score annotations, choose for each annotation method how well it finds the new gene. Scores are (5) exon overlap, (2) exon within 1kb, (1) exon within 2kb, only where exon doesn't belong to other well-known gene. Clicking the Submit button will e-mail your scoring to drospege.

New gene dyak-acps-begun.fasta and Source data, code for this table

Don Gilbert, may 06

my results:

Method    Score
DGIL_SNP        74
NCBI_GNO        32
EISE_CGM        10
OXFD_GPI        2
PACH_GMP        0
FlyGeneHSP      20