Drosophila gene prediction assessment

How well do gene predictors find new genes found by other methods?
Test using coding sequence identified for new Dyak (9) and Dere (1) genes from

Recently Evolved Genes Identified From Drosophila yakuba and D. erecta Accessory Gland Expressed Sequence Tags
David J. Begun, Heather A. Lindfors, Melissa E. Thompson and Alisha K. Holloway
Section of Evolution and Ecology, University of California, Davis, California 95616
Genetics, Vol. 172, 1675-1681, March 2006, Copyright 2006 doi:10.1534/genetics.105.050336

Use the web links in the "match link" column to view annotations at the site of these BLAST-located coding sequence of new genes. Score the gene predictions here.

query bitscore match link

yakuba_Acp224 1606 dyak_caf051213:chr2L .. GFF

yakuba_Acp157a 1310.8 dyak_caf051213:chr2R .. GFF

yakuba_Acp157a 112 dyak_caf051213:chr2R .. GFF

yakuba_Acp225 952 dyak_caf051213:chr3R .. GFF

yakuba_Acp225 250 dsec_br051028:scaffold_13 .. GFF

yakuba_Acp225 210.6 dsim_wu050602:chr3R .. GFF

yakuba_Acp134 476 dyak_caf051213:chr2R .. GFF

yakuba_Acp134 297.4 dyak_caf051213:chr2R .. GFF

yakuba_Acp134 119 dmel_r4.1:2R .. GFF

yakuba_Acp134 115 dere_caf060210:scaffold_4845 .. GFF

yakuba_Acp134 101 dsec_br051028:scaffold_1 .. GFF

yakuba_Acp223 1378 dyak_caf051213:chr2R .. GFF

yakuba_Acp223 213 dere_caf060210:scaffold_4845 .. GFF

yakuba_Acp223 135.8 dsec_br051028:scaffold_337 .. GFF

yakuba_Acp133 767 dyak_caf051213:chr2R .. GFF

yakuba_Acp133 230.7 dsim_wu050602:chr2R .. GFF

yakuba_Acp133 230.7 dsec_br051028:scaffold_1 .. GFF

yakuba_Acp133 232 dmel_r4.1:2R .. GFF

yakuba_Acp133 404 dere_caf060210:scaffold_4845 .. GFF

yakuba_Acp158 850 dyak_caf051213:chr2R .. GFF

yakuba_Gene144 525 dyak_caf051213:chr2L .. GFF

yakuba_Acp157 1223 dyak_caf051213:chr2R .. GFF

yakuba_Acp157 181.8 dyak_caf051213:chr2R .. GFF

erecta_Acp100 1249 dere_caf060210:scaffold_4929 .. GFF

erecta_Acp100 123.9 dyak_caf051213:chr2L .. GFF

query bitscore match link

New gene dyak-acps-begun.fasta and Source data, code for this table

Don Gilbert, may 06

my results:

Method    Score
DGIL_SNP        74
NCBI_GNO        32
EISE_CGM        10
OXFD_GPI        2
PACH_GMP        0
FlyGeneHSP      20

Developed at the Genome Informatics Lab of Indiana University Biology Department