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Index of /species/news/genome-summaries/gene-GO-function-association/genes6-dmel12-worm-v9g3
Name Last modified Size Description
Parent Directory 02-Jan-2007 17:51 -
index-brief.html 31-Dec-2006 23:09 8k
Deviations in gene matches for GO categories by species genomes.
These deviations suggest where species may differ in biological function groups.Target species genomes: Dro.mel, Dro.sim, Dro.sec, Dro.yak, Dro.ere, Dro.ana, Dro.per, Dro.pse, Dro.wil, Dro.moj, Dro.vir, Dro.gri
Source proteome: Worm [version 9g3]
Gene Function Associations in Species Genomes Deviations in gene matches for GO categories by species genomes. Summary of table: genes6-dmel12-worm-v9g3/index-summary-crosstab.txt Minimum Chi^2 per row: 3 goterm dmel dsim dsec dyak dere dana dper dpse dwil dmoj dvir dgri Ng Term and Grouping GO:0003677 . ++ . . . . . -- . . - . 467 DNA binding, F:binding GO:0005544 ++++ - . . . . . . . . . . 10 calcium-dependent phospholipid binding, F:binding GO:0003964 ---- -- . +++ - +++ + ---- +++ + --- . 12 RNA-directed DNA polymerase activity, F:catalytic activity GO:0003995 . . . - - . - . . . ++ ++ 19 acyl-CoA dehydrogenase activity, F:catalytic activity GO:0003997 . . . - - . - - . . +++ +++ 11 acyl-CoA oxidase activity, F:catalytic activity GO:0004175 . . . . . - ++ ++ . . . . 28 endopeptidase activity, F:catalytic activity GO:0004190 --- . + +++ -- +++ +++ ---- +++ - --- -- 35 aspartic-type endopeptidase activity, F:catalytic activity GO:0004298 . . - . - - + ++ . . . . 29 threonine endopeptidase activity, F:catalytic activity GO:0008378 . . . . . + + ++ -- . - . 9 galactosyltransferase activity, F:catalytic activity GO:0008417 . . - . . . + ++ . . . + 5 fucosyltransferase activity, F:catalytic activity GO:0008533 . . . . . -- . . . +++ . . 16 astacin activity, F:catalytic activity GO:0015923 ++ ++ . + . + . . . -- -- -- 13 mannosidase activity, F:catalytic activity GO:0001584 - . . . . . . +++ . . . . 83 rhodopsin-like receptor activity, F:signal transducer activity GO:0004983 . . + . + . -- + . . . -- 9 neuropeptide Y receptor activity, F:signal transducer activity Over/Under +2/-2 +2/-1 +0/-0 +2/-0 +0/-1 +2/-1 +2/-1 +5/-3 +2/-1 +1/-1 +2/-3 +2/-3 Relative amount of over- and under-representation in groups (not gene counts) goterm dmel dsim dsec dyak dere dana dper dpse dwil dmoj dvir dgri Ng Term and Grouping GO:0008150 . . ++ . - - ++ - . . - . 10 biological_process, P: GO:0007218 . - . . . . . . . . ++++ . 13 neuropeptide signaling pathway, P:cellular process GO:0006278 ---- -- . +++ - +++ + ---- +++ + --- . 12 RNA-dependent DNA replication, P:physiological process GO:0006310 ----- . . +++++ ----- ++++ +++++ ----- +++++ . --- -- 50 DNA recombination, P:physiological process GO:0006334 . . + -- +++ . + ---- . . . . 45 nucleosome assembly, P:physiological process GO:0006486 . . . . . . + ++ - . . . 18 protein amino acid glycosylation, P:physiological process GO:0006511 . . - . . -- + ++ . . . . 61 ubiquitin-dependent protein catabolism, P:physiological process GO:0006635 . . . - - . - - . . +++ +++ 11 fatty acid beta-oxidation, P:physiological process GO:0006997 . . . . ++ . . -- . . . . 10 nuclear organization and biogenesis, P:physiological process GO:0007001 . . . -- ++++ . + ---- . . . . 36 chromosome organization and biogenesis (sensu Eukaryota), P:physiological process GO:0040004 . . . - ++ . . . - + . . 32 cuticular attachment to epithelium (sensu Nematoda), P:physiological process Over/Under +0/-2 +0/-1 +1/-0 +2/-2 +4/-1 +2/-1 +2/-0 +2/-5 +2/-0 +0/-0 +2/-2 +1/-1 Relative amount of over- and under-representation in groups (not gene counts) goterm dmel dsim dsec dyak dere dana dper dpse dwil dmoj dvir dgri Ng Term and Grouping GO:0016021 + . . . . - -- ++ - . + . 494 integral to membrane, C:cell part GO:0030117 ++ ++ . . . . . . . . . . 6 membrane coat, C:cell part GO:0005777 . . . - - . - - . . ++ +++ 13 peroxisome, C:organelle GO:0000786 . . + -- ++++ . + ----- . . . . 41 nucleosome, C:protein complex GO:0005839 . . - . - - + ++ . . . . 29 proteasome core complex (sensu Eukaryota), C:protein complex Over/Under +1/-0 +1/-0 +0/-0 +0/-1 +1/-0 +0/-0 +0/-1 +2/-1 +0/-0 +0/-0 +1/-0 +1/-0 Relative amount of over- and under-representation in groups (not gene counts)