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Index of /species/news/genome-summaries/gene-GO-function-association/genes6-dmel12-mouse-v9g3
Name Last modified Size Description
Parent Directory 02-Jan-2007 17:51 -
abbreviated-crosstab.txt 31-Dec-2006 20:30 12k
Deviations in gene matches for GO categories by species genomes.
These deviations suggest where species may differ in biological function groups.Target species genomes: Dro.mel, Dro.sim, Dro.sec, Dro.yak, Dro.ere, Dro.ana, Dro.per, Dro.pse, Dro.wil, Dro.moj, Dro.vir, Dro.gri
Source proteome: Mouse [version 9g3]
Gene Function Associations in Species Genomes Deviations in gene matches for GO categories by species genomes. Summary of table: genes6-dmel12-mouse-v9g3/index-summary-crosstab.txt Minimum Chi^2 per row: 3 goterm dmel dsim dsec dyak dere dana dper dpse dwil dmoj dvir dgri Ng Term and Grouping GO:0005515 ++ +++ . . . --- + - -- . . + 1546 protein binding, F:binding GO:0005537 . . - . . . . + . . +++ -- 6 mannose binding, F:binding GO:0005544 +++ . . -- . . . . . - . . 9 calcium-dependent phospholipid binding, F:binding GO:0008143 ++ . ++ . . . . . . . . - 7 poly(A) binding, F:binding GO:0019838 + ++ + . . -- . . . . -- . 8 growth factor binding, F:binding GO:0030151 . . . . . + . + - - . ++ 12 molybdenum ion binding, F:binding GO:0050661 ++ + - . . . . . ++ . - . 6 NADP binding, F:binding GO:0004031 - . . . . + . . - . . +++ 8 aldehyde oxidase activity, F:catalytic activity GO:0004182 - -- . . . . . . . ++ . . 32 carboxypeptidase A activity, F:catalytic activity GO:0004190 . . . . . ++ . . + - - - 12 aspartic-type endopeptidase activity, F:catalytic activity GO:0004252 . . . + . ++ - - + - -- . 169 serine-type endopeptidase activity, F:catalytic activity GO:0008132 -- -- . + - . . . + ++ ++ . 5 pancreatic elastase activity, F:catalytic activity GO:0008237 - -- . . . . . + . + + . 158 metallopeptidase activity, F:catalytic activity GO:0016491 +++ +++ . . . . - - . -- . . 507 oxidoreductase activity, F:catalytic activity GO:0016709 ++ . . + . . - . ++ - - - 12 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen, F:catalytic activity GO:0016789 . -- - - . ++ . . +++ . + - 25 carboxylic ester hydrolase activity, F:catalytic activity GO:0018685 . ++ . -- . . - . . . ++ . 5 alkane 1-monooxygenase activity, F:catalytic activity GO:0050381 . ++ . . - . -- . . . . . 29 unspecific monooxygenase activity, F:catalytic activity GO:0001584 -- -- . . . . . ++ . . . - 102 rhodopsin-like receptor activity, F:signal transducer activity GO:0004935 --- --- ++ + ++ - . . . + . . 18 adrenoceptor activity, F:signal transducer activity GO:0004936 -- -- . . ++ . . . . + . . 6 alpha-adrenergic receptor activity, F:signal transducer activity GO:0004952 -- -- . - - + . ++ . . + . 6 dopamine receptor activity, F:signal transducer activity GO:0004984 + +++ ++ . - . . -- . . . . 8 olfactory receptor activity, F:signal transducer activity GO:0004993 -- -- . + + . . + . . . . 15 serotonin receptor activity, F:signal transducer activity GO:0004995 . . . . +++ . - . . . . - 4 tachykinin receptor activity, F:signal transducer activity GO:0017154 +++++ . . . . . - - . . . . 3 semaphorin receptor activity, F:signal transducer activity GO:0030020 . -- -- . . . . ++ . . . + 21 extracellular matrix structural constituent conferring tensile strength, F:structural molecule activity GO:0005245 ++ + - . . . ++ . - . -- . 12 voltage-gated calcium channel activity, F:transporter activity GO:0015077 ++ . . . . -- . . . . - + 6 monovalent inorganic cation transporter activity, F:transporter activity GO:0015114 . . -- . . . . - +++ . - + 5 phosphate transporter activity, F:transporter activity Over/Under +9/-6 +6/-10 +3/-2 +0/-2 +3/-0 +3/-3 +1/-1 +3/-1 +4/-1 +2/-1 +3/-3 +2/-1 Relative amount of over- and under-representation in groups (not gene counts) goterm dmel dsim dsec dyak dere dana dper dpse dwil dmoj dvir dgri Ng Term and Grouping GO:0001504 . - - . . -- - . + ++ . . 5 neurotransmitter uptake, P:cellular process GO:0007160 . - + + . . . -- + . . . 22 cell-matrix adhesion, P:cellular process GO:0007169 . . . . . . - - . . . +++ 27 transmembrane receptor protein tyrosine kinase signaling pathway, P:cellular process GO:0007188 . . ++ + . . . . . . -- . 14 G-protein signaling, coupled to cAMP nucleotide second messenger, P:cellular process GO:0007229 . . . ++ . - . -- . . . ++ 27 integrin-mediated signaling pathway, P:cellular process GO:0016601 . . . ++ . . . - - . . . 7 Rac protein signal transduction, P:cellular process GO:0030154 . + . . . . -- - . . ++ . 208 cell differentiation, P:cellular process GO:0000059 . ++ . - . +++ . . + - - - 15 protein import into nucleus, docking, P:physiological process GO:0006334 . . ++++ . ++ . . --- - . . . 37 nucleosome assembly, P:physiological process GO:0006397 ++ ++ . - . . - . . - . . 143 mRNA processing, P:physiological process GO:0006471 +++ . . . . - . - . . . . 4 protein amino acid ADP-ribosylation, P:physiological process GO:0006812 +++ ++ . . . . . . -- . - . 95 cation transport, P:physiological process GO:0006817 . - -- . . + . + + . . . 26 phosphate transport, P:physiological process GO:0006874 ++ . . - - . . ++ . - . . 20 calcium ion homeostasis, P:physiological process GO:0006956 - . -- - . . + . . +++ . + 12 complement activation, P:physiological process GO:0006958 - + - - . . . . . ++ . . 9 complement activation, classical pathway, P:physiological process GO:0007001 + . +++ . + . . ---- . . . . 26 chromosome organization and biogenesis (sensu Eukaryota), P:physiological process GO:0007009 . . . . . . . . - + ++ . 8 plasma membrane organization and biogenesis, P:physiological process GO:0007411 + . + . . . . -- - . ++ . 37 axon guidance, P:physiological process GO:0009312 . . . . . . ++ ++ -- . . -- 6 oligosaccharide biosynthesis, P:physiological process GO:0015672 ++ . . . . -- . . - . . . 7 monovalent inorganic cation transport, P:physiological process GO:0016926 . . - - - . + . - - - +++++ 2 protein desumoylation, P:physiological process GO:0050974 - . . . . . + +++ . . . - 7 detection of mechanical stimulus during sensory perception, P:physiological process GO:0016481 . + . . . - . . -- . . ++ 27 negative regulation of transcription, P:regulation of biological process GO:0042108 . + . - . . . . ++ . . . 7 positive regulation of cytokine biosynthesis, P:regulation of biological process GO:0045595 ++ + + . . -- . . - . . - 22 regulation of cell differentiation, P:regulation of biological process GO:0046324 . ++ . ++ -- - -- + - . . . 2 regulation of glucose import, P:regulation of biological process GO:0008344 . . ++ . . - . . -- . . . 13 adult locomotory behavior, P:response to stimulus Over/Under +6/-0 +4/-0 +4/-2 +3/-0 +1/-1 +1/-3 +1/-2 +3/-5 +1/-4 +3/-0 +3/-1 +4/-1 Relative amount of over- and under-representation in groups (not gene counts) goterm dmel dsim dsec dyak dere dana dper dpse dwil dmoj dvir dgri Ng Term and Grouping GO:0005911 - + . . . . . . -- . ++ . 8 intercellular junction, C:cell part GO:0005581 . -- -- . . . . ++ . + . + 21 collagen, C:extracellular matrix part GO:0005578 -- - . . . . . . . ++ . . 116 extracellular matrix (sensu Metazoa), C:extracellular matrix GO:0005576 - . . . . . . - . . + ++ 107 extracellular region, C:extracellular region GO:0005882 . . . . + . . - . - . ++ 23 intermediate filament, C:organelle part GO:0005694 + . ++ --- . . . --- . . . . 69 chromosome, C:organelle GO:0000786 . . ++++ - ++ . . ----- - . . . 36 nucleosome, C:protein complex GO:0005643 . + . - - ++ . . . - . - 32 nuclear pore, C:protein complex GO:0005667 + . . . . . . -- . ++ . . 211 transcription factor complex, C:protein complex GO:0005891 ++ + - . . . ++ . - . -- . 12 voltage-gated calcium channel complex, C:protein complex Over/Under +1/-1 +0/-1 +2/-1 +0/-1 +1/-0 +1/-0 +1/-0 +1/-3 +0/-1 +2/-0 +1/-1 +2/-0 Relative amount of over- and under-representation in groups (not gene counts)