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Index of /species/news/genome-summaries/gene-GO-function-association/genes6-dmel12-fruitfly-v9g3
Name Last modified Size Description
Parent Directory 02-Jan-2007 17:51 -
index-brief.html 31-Dec-2006 23:09 15k
Deviations in gene matches for GO categories by species genomes.
These deviations suggest where species may differ in biological function groups.Target species genomes: Dro.mel, Dro.sim, Dro.sec, Dro.yak, Dro.ere, Dro.ana, Dro.per, Dro.pse, Dro.wil, Dro.moj, Dro.vir, Dro.gri
Source proteome: Fruitfly [version 9g3]
Gene Function Associations in Species Genomes Deviations in gene matches for GO categories by species genomes. Summary of table: genes6-dmel12-fruitfly-v9g3/index-summary-crosstab.txt Minimum Chi^2 per row: 3 goterm dmel dsim dsec dyak dere dana dper dpse dwil dmoj dvir dgri Ng Term and Grouping GO:0005554 ++++ +++ +++++ ++++ ++++ . ---- --- ---- -- --- ---- 674 molecular_function unknown, F: GO:0003725 . + ++ - . - . . . . . . 18 double-stranded RNA binding, F:binding GO:0005102 - . -- - - . + . . ++ +++ +++ 233 receptor binding, F:binding GO:0005506 . . - . . + . . ++ . . . 38 iron ion binding, F:binding GO:0005534 . . . + . + . + + - -- -- 12 galactose binding, F:binding GO:0000163 . -- - . . - + + + . . . 12 protein phosphatase type 1 activity, F:catalytic activity GO:0004252 . ++ . + . . -- - + -- . . 200 serine-type endopeptidase activity, F:catalytic activity GO:0004263 . ++ . ++ . . --- - . -- . . 211 chymotrypsin activity, F:catalytic activity GO:0004295 . +++ . ++ + . --- - . -- - . 235 trypsin activity, F:catalytic activity GO:0004497 - - . - . + - . ++ . . + 105 monooxygenase activity, F:catalytic activity GO:0004559 . . . . . ++ . . +++ - - -- 10 alpha-mannosidase activity, F:catalytic activity GO:0004656 - - . - . . ++++ ++++ . . - . 23 procollagen-proline 4-dioxygenase activity, F:catalytic activity GO:0008376 . - . . . . . . - ++ ++ + 6 acetylgalactosaminyltransferase activity, F:catalytic activity GO:0008378 . - - . . . . . . ++ ++ . 7 galactosyltransferase activity, F:catalytic activity GO:0008499 . . . . . + ++ ++ - . - - 7 UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity, F:catalytic activity GO:0016207 - - . . . . . . + +++ ++ . 7 4-coumarate-CoA ligase activity, F:catalytic activity GO:0016401 - - . - . + - . . . ++ +++ 4 palmitoyl-CoA oxidase activity, F:catalytic activity GO:0016740 - . . . . . - . . ++ ++ . 99 transferase activity, F:catalytic activity GO:0016747 - - + - - . . . ++++ . . . 10 transferase activity, transferring groups other than amino-acyl groups, F:catalytic activity GO:0016757 - -- - - - . + + . ++ . + 39 transferase activity, transferring glycosyl groups, F:catalytic activity GO:0016919 - - - . . . +++ +++++ . . . . 3 nardilysin activity, F:catalytic activity GO:0016984 - . - - - . + + . ++ ++ + 7 ribulose-bisphosphate carboxylase activity, F:catalytic activity GO:0042708 - . - . - . . . ++++ - . . 15 elastase activity, F:catalytic activity GO:0008605 ++ ++ +++ - - - . . - - - . 5 protein kinase CK2 regulator activity, F:enzyme regulator activity GO:0008046 . . - - . . + - . + . +++ 7 axon guidance receptor activity, F:signal transducer activity GO:0005316 - - - - - . . . ++ ++ . + 22 high affinity inorganic phosphate:sodium symporter activity, F:transporter activity GO:0015450 - -- - - . . ++ +++ + . . . 30 protein translocase activity, F:transporter activity Over/Under +2/-0 +5/-3 +3/-1 +3/-0 +1/-0 +1/-0 +4/-4 +4/-1 +6/-1 +8/-4 +7/-2 +3/-3 Relative amount of over- and under-representation in groups (not gene counts) goterm dmel dsim dsec dyak dere dana dper dpse dwil dmoj dvir dgri Ng Term and Grouping GO:0016065 ++ ++ +++ ++ + -- . . -- -- -- -- 4 , : Over/Under +1/-0 +1/-0 +1/-0 +1/-0 +0/-0 +0/-1 +0/-0 +0/-0 +0/-1 +0/-1 +0/-1 +0/-1 Relative amount of over- and under-representation in groups (not gene counts) goterm dmel dsim dsec dyak dere dana dper dpse dwil dmoj dvir dgri Ng Term and Grouping GO:0000004 +++++ +++ +++++ ++++ ++++ . ---- --- ---- -- --- ----- 627 biological_process unknown, P: GO:0007224 -- . . - - . ++ . + + . . 36 smoothened signaling pathway, P:cellular process GO:0002009 . - . - . . +++ ++ - . . . 35 morphogenesis of an epithelium, P:development GO:0000281 . . - . . . . ++ . . . +++ 4 cytokinesis after mitosis, P:physiological process GO:0006118 - - -- - . + . . ++ . + ++ 302 electron transport, P:physiological process GO:0006334 . - ++ -- ++ . + -- . . . . 44 nucleosome assembly, P:physiological process GO:0006464 - - -- - - . +++ ++ . + . + 170 protein modification, P:physiological process GO:0006508 . . -- . . . . . + . . ++ 767 proteolysis, P:physiological process GO:0006511 - - -- . - . +++ + . + + . 82 ubiquitin-dependent protein catabolism, P:physiological process GO:0007076 - . . . . . ++ ++ . . . . 18 mitotic chromosome condensation, P:physiological process GO:0007594 ++ + + ++ . . . . . - - -- 5 puparial adhesion, P:physiological process GO:0008202 . - - . . ++ - . ++++ . . . 108 steroid metabolism, P:physiological process GO:0008363 - - - ++ -- ++ + ++ -- - . ++ 5 larval cuticle biosynthesis (sensu Insecta), P:physiological process GO:0009247 - -- - . - . . . . ++++ ++ ++ 6 glycolipid biosynthesis, P:physiological process GO:0015977 - . - - - . + + . ++ ++ + 7 carbon utilization by fixation of carbon dioxide, P:physiological process GO:0016567 -- - - - . . +++ + . + . . 141 protein ubiquitination, P:physiological process GO:0018401 - . . - . . +++ ++ . . - . 19 peptidyl-proline hydroxylation to 4-hydroxy-L-proline, P:physiological process GO:0030261 - - . - . - ++ ++ + . . . 18 chromosome condensation, P:physiological process GO:0030422 . . . . . - +++ +++ . . . . 6 RNA interference, production of siRNA, P:physiological process GO:0030423 . . . . . - ++ ++ . . . . 8 RNA interference, targeting of mRNA for destruction, P:physiological process GO:0035087 - . . . . - ++ +++ . - - . 6 RNA interference, siRNA loading onto RISC, P:physiological process GO:0051227 - . ++ . - - - - . . . ++++ 5 mitotic spindle assembly, P:physiological process GO:0006521 + ++ ++ ++ + - - . - - -- -- 12 regulation of amino acid metabolism, P:regulation of biological process GO:0030728 . . - . . . . . - ++ ++ . 6 ovulation, P:reproduction GO:0007618 . - - . . . . . . ++ ++ . 5 mating, P:response to stimulus GO:0042742 -- -- --- - -- . ++ ++ +++ . ++ ++ 46 defense response to bacterium, P:response to stimulus GO:0045297 ++ +++ +++ ++ + . . . --- -- -- --- 5 post-mating behavior, P:response to stimulus GO:0046692 . . . - . . ++ + -- + ++ - 9 sperm competition, P:response to stimulus Over/Under +3/-3 +3/-2 +5/-5 +5/-1 +2/-2 +2/-0 +13/-1 +11/-2 +3/-4 +4/-2 +6/-3 +7/-4 Relative amount of over- and under-representation in groups (not gene counts) goterm dmel dsim dsec dyak dere dana dper dpse dwil dmoj dvir dgri Ng Term and Grouping GO:0008372 ++++ +++ ++++ ++++ +++ . ---- --- --- -- --- ---- 744 cellular_component unknown, C: GO:0005792 . - . - . ++ - . +++ . + . 91 microsome, C:cell part GO:0009573 - . - - - . + + . ++ ++ + 7 ribulose bisphosphate carboxylase complex (sensu Magnoliophyta), C:cell part GO:0018994 . - - - . . +++ . ++ . . . 6 polar granule, C:organelle GO:0000164 -- - - - . . . + + ++ . . 8 protein phosphatase type 1 complex, C:protein complex GO:0000786 . - . -- + . . ---- . + + . 35 nucleosome, C:protein complex GO:0005742 - - - . - . +++ +++ + . . - 11 mitochondrial outer membrane translocase complex, C:protein complex GO:0005956 ++ ++ +++ - - - . . - . . . 6 protein kinase CK2 complex, C:protein complex GO:0016222 - - . - . . +++ ++++ . . - . 22 procollagen-proline, 2-oxoglutarate-4-dioxygenase complex, C:protein complex GO:0016442 . . . . . - ++ ++ . . . . 8 RNA-induced silencing complex, C:protein complex GO:0019005 -- -- - - - + + + ++ . . . 15 SCF ubiquitin ligase complex, C:protein complex Over/Under +2/-2 +2/-1 +2/-0 +1/-1 +1/-0 +1/-0 +4/-1 +3/-2 +3/-1 +2/-1 +1/-1 +0/-1 Relative amount of over- and under-representation in groups (not gene counts)