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Index of /species/news/genome-summaries/gene-GO-function-association/genes6-cele5-worm-v9g3
Name Last modified Size Description
Parent Directory 02-Jan-2007 17:51 -
abbreviated-crosstab.txt 31-Dec-2006 20:30 20k
Deviations in gene matches for GO categories by species genomes.
These deviations suggest where species may differ in biological function groups.Target species genomes: C.elegans, Daphnia_pulex, Dro.mel, Dro.pse, Dro.vir
Source proteome: Worm [version 9g3]
Gene Function Associations in Species Genomes Deviations in gene matches for GO categories by species genomes. Summary of table: genes6-cele5-worm-v9g3/index-summary-crosstab.txt Minimum Chi^2 per row: 5 goterm cele dpul dmel dpse dvir Ng Term and Grouping GO:0003674 ++++ . - - - 1 molecular_function, F: GO:0005554 +++++ ---- -- - --- 175 molecular_function unknown, F: GO:0000166 ----- . +++ ++ ++ 268 nucleotide binding, F:binding GO:0003676 --- + . + ++ 576 nucleic acid binding, F:binding GO:0003677 + +++ - --- . 461 DNA binding, F:binding GO:0003700 +++++ ----- ---- ---- --- 270 transcription factor activity, F:binding GO:0003723 -- +++ . . . 113 RNA binding, F:binding GO:0003779 --- ++ . . . 38 actin binding, F:binding GO:0005179 +++++ -- --- -- --- 10 hormone activity, F:binding GO:0005506 ---- +++++ . . . 131 iron ion binding, F:binding GO:0005509 --- . ++ . ++ 205 calcium ion binding, F:binding GO:0005524 --- +++ . . . 770 ATP binding, F:binding GO:0005529 +++++ ----- ----- ----- ----- 98 sugar binding, F:binding GO:0005544 -- . +++ . . 10 calcium-dependent phospholipid binding, F:binding GO:0008061 ---- . . ++ + 29 chitin binding, F:binding GO:0008199 . +++ . . - 4 ferric iron binding, F:binding GO:0008270 ---- . . ++ + 571 zinc ion binding, F:binding GO:0008289 ++++ . -- . -- 19 lipid binding, F:binding GO:0020037 . +++ . . - 106 heme binding, F:binding GO:0050660 --- ++ . . . 17 FAD binding, F:binding GO:0003964 . +++++ --- -- -- 7 RNA-directed DNA polymerase activity, F:catalytic activity GO:0003993 +++ -- . . . 12 acid phosphatase activity, F:catalytic activity GO:0004089 ---- +++ . + . 18 carbonate dehydratase activity, F:catalytic activity GO:0004175 -- . . +++ . 26 endopeptidase activity, F:catalytic activity GO:0004179 --- + + . . 23 membrane alanyl aminopeptidase activity, F:catalytic activity GO:0004180 --- +++ . . . 14 carboxypeptidase activity, F:catalytic activity GO:0004182 --- ++++ . . . 34 carboxypeptidase A activity, F:catalytic activity GO:0004190 - +++++ -- -- - 25 aspartic-type endopeptidase activity, F:catalytic activity GO:0004197 . ++++ - - . 52 cysteine-type endopeptidase activity, F:catalytic activity GO:0004198 +++ . . -- -- 5 calpain activity, F:catalytic activity GO:0004263 ----- . + ++ ++ 22 chymotrypsin activity, F:catalytic activity GO:0004295 ---- . . + ++ 25 trypsin activity, F:catalytic activity GO:0004298 ---- -- + +++ ++ 23 threonine endopeptidase activity, F:catalytic activity GO:0004386 -- +++ . . . 90 helicase activity, F:catalytic activity GO:0004435 . +++ - -- - 7 phosphoinositide phospholipase C activity, F:catalytic activity GO:0004437 --- - + ++ + 19 inositol or phosphatidylinositol phosphatase activity, F:catalytic activity GO:0004497 --- +++++ . . - 103 monooxygenase activity, F:catalytic activity GO:0004556 --- - + +++ + 11 alpha-amylase activity, F:catalytic activity GO:0004568 +++ . - . -- 22 chitinase activity, F:catalytic activity GO:0004629 . ++++ - - - 6 phospholipase C activity, F:catalytic activity GO:0004672 ++++ . -- -- -- 284 protein kinase activity, F:catalytic activity GO:0004713 +++ + -- - - 72 protein-tyrosine kinase activity, F:catalytic activity GO:0004714 +++++ --- ---- ---- ---- 19 transmembrane receptor protein tyrosine kinase activity, F:catalytic activity GO:0004721 +++++ --- -- - - 51 phosphoprotein phosphatase activity, F:catalytic activity GO:0004725 +++++ ---- --- --- -- 42 protein tyrosine phosphatase activity, F:catalytic activity GO:0004768 --- . + ++ . 8 stearoyl-CoA 9-desaturase activity, F:catalytic activity GO:0004806 +++++ -- -- --- --- 7 triacylglycerol lipase activity, F:catalytic activity GO:0004812 --- ++ . . . 51 aminoacyl-tRNA ligase activity, F:catalytic activity GO:0005006 +++++ --- ---- ---- ---- 17 epidermal growth factor receptor activity, F:catalytic activity GO:0008107 +++++ - -- -- -- 3 galactoside 2-alpha-L-fucosyltransferase activity, F:catalytic activity GO:0008235 - ++++ . - . 11 metalloexopeptidase activity, F:catalytic activity GO:0008237 -- +++ . . . 110 metallopeptidase activity, F:catalytic activity GO:0008375 ++++ -- - - - 9 acetylglucosaminyltransferase activity, F:catalytic activity GO:0008378 . +++++ -- . --- 17 galactosyltransferase activity, F:catalytic activity GO:0008417 -- +++++ -- . - 9 fucosyltransferase activity, F:catalytic activity GO:0008483 -- +++++ - - . 20 transaminase activity, F:catalytic activity GO:0008484 --- . ++ + . 9 sulfuric ester hydrolase activity, F:catalytic activity GO:0008533 . +++++ -- -- -- 27 astacin activity, F:catalytic activity GO:0008642 -- -- . +++ + 30 small protein activating enzyme activity [alt], F:catalytic activity GO:0016291 +++++ . - -- -- 2 acyl-CoA thioesterase activity, F:catalytic activity GO:0016298 +++++ - -- -- -- 4 lipase activity, F:catalytic activity GO:0016491 --- +++++ . . . 282 oxidoreductase activity, F:catalytic activity GO:0016614 --- . ++ . . 11 oxidoreductase activity, acting on CH-OH group of donors, F:catalytic activity GO:0016706 --- . . +++ . 19 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, F:catalytic activity GO:0016747 +++ ++ -- -- -- 41 transferase activity, transferring groups other than amino-acyl groups, F:catalytic activity GO:0016757 - +++++ . - - 5 transferase activity, transferring glycosyl groups, F:catalytic activity GO:0016758 +++ ---- . . - 49 transferase activity, transferring hexosyl groups, F:catalytic activity GO:0016789 -- ++++ + - . 22 carboxylic ester hydrolase activity, F:catalytic activity GO:0016791 -- --- ++ ++ . 7 phosphoric monoester hydrolase activity, F:catalytic activity GO:0016847 - ++++ . - - 6 1-aminocyclopropane-1-carboxylate synthase activity, F:catalytic activity GO:0016874 -- +++++ - . - 19 ligase activity, F:catalytic activity GO:0016887 ---- + ++ . + 104 ATPase activity, F:catalytic activity GO:0017111 ----- . ++ + + 143 nucleoside-triphosphatase activity, F:catalytic activity GO:0042626 --- . ++ . + 56 ATPase activity, coupled to transmembrane movement of substances, F:catalytic activity GO:0004867 . ----- . + ++ 54 serine-type endopeptidase inhibitor activity, F:enzyme regulator activity GO:0003774 --- - + + ++ 33 motor activity, F:motor activity GO:0003777 --- . . ++ + 35 microtubule motor activity, F:motor activity GO:0001584 +++++ ----- ----- ---- ----- 149 rhodopsin-like receptor activity, F:signal transducer activity GO:0003707 +++++ ----- ----- ----- ----- 78 steroid hormone receptor activity, F:signal transducer activity GO:0004872 ---- -- + + +++ 33 receptor activity, F:signal transducer activity GO:0004879 +++++ --- ---- ---- ---- 40 ligand-dependent nuclear receptor activity, F:signal transducer activity GO:0004888 +++++ ----- ----- ---- ---- 39 transmembrane receptor activity, F:signal transducer activity GO:0004890 +++ . -- -- - 19 GABA-A receptor activity, F:signal transducer activity GO:0004930 +++++ ----- ----- ----- ----- 151 G-protein coupled receptor activity, F:signal transducer activity GO:0004970 --- - . ++ +++ 20 ionotropic glutamate receptor activity, F:signal transducer activity GO:0008158 +++++ . - -- -- 10 hedgehog receptor activity, F:signal transducer activity GO:0030594 +++ ++ - -- -- 41 neurotransmitter receptor activity, F:signal transducer activity GO:0003735 --- . ++ . . 129 structural constituent of ribosome, F:structural molecule activity GO:0005198 +++++ -- - - - 108 structural molecule activity, F:structural molecule activity GO:0042302 +++++ . ----- ----- ----- 53 structural constituent of cuticle, F:structural molecule activity GO:0005215 ---- - . ++ ++++ 281 transporter activity, F:transporter activity GO:0005216 --- ++ + . . 88 ion channel activity, F:transporter activity GO:0005230 +++++ . -- --- --- 48 extracellular ligand-gated ion channel activity, F:transporter activity GO:0005234 --- - . ++ +++ 20 glutamate-gated ion channel activity, F:transporter activity GO:0005262 -- +++ . . . 9 calcium channel activity, F:transporter activity GO:0005272 +++ ---- . . . 15 sodium channel activity, F:transporter activity Over/Under +34/-48 +34/-24 +10/-28 +16/-28 +12/-28 Relative amount of over- and under-representation in groups (not gene counts) goterm cele dpul dmel dpse dvir Ng Term and Grouping GO:0007154 ++++ . -- - - 10 cell communication, P:cellular process GO:0007155 ---- - ++ + ++ 39 cell adhesion, P:cellular process GO:0007186 +++++ ----- ----- ---- ----- 169 G-protein coupled receptor protein signaling pathway, P:cellular process GO:0007188 --- -- ++ ++ + 10 G-protein signaling, coupled to cAMP nucleotide second messenger, P:cellular process GO:0007218 . --- . . +++ 14 neuropeptide signaling pathway, P:cellular process GO:0007223 --- +++ . . . 10 frizzled-2 signaling pathway, P:cellular process GO:0007308 ---- ++ . . + 26 oocyte construction, P:cellular process GO:0002009 ---- - +++ ++ + 159 morphogenesis of an epithelium, P:development GO:0002119 --- . . ++ . 40 larval development (sensu Nematoda), P:development GO:0008340 ---- + ++ + . 85 determination of adult life span, P:development GO:0009790 ---- . . ++ + 73 embryonic development, P:development GO:0009792 ----- . ++++ ++++ ++++ 1230 embryonic development (sensu Metazoa), P:development GO:0009952 --- . . . ++ 12 anterior/posterior pattern formation, P:development GO:0040032 --- . ++ . + 186 post-embryonic body morphogenesis, P:development GO:0040035 ----- . +++ +++ ++ 335 hermaphrodite genitalia development, P:development GO:0040007 ----- . ++++ +++ ++++ 620 growth, P:growth GO:0006030 ----- . + ++ ++ 26 chitin metabolism, P:physiological process GO:0006032 +++ . - . -- 22 chitin catabolism, P:physiological process GO:0006100 --- - . ++ ++ 9 tricarboxylic acid cycle intermediate metabolism, P:physiological process GO:0006118 --- +++++ . . - 306 electron transport, P:physiological process GO:0006278 . +++++ --- -- -- 7 RNA-dependent DNA replication, P:physiological process GO:0006310 --- +++++ ----- ----- + 29 DNA recombination, P:physiological process GO:0006412 ---- ++ ++ . . 162 protein biosynthesis, P:physiological process GO:0006418 --- ++ . . . 51 tRNA aminoacylation for protein translation, P:physiological process GO:0006468 ++++ . -- -- -- 294 protein amino acid phosphorylation, P:physiological process GO:0006470 +++++ ---- -- - - 69 protein amino acid dephosphorylation, P:physiological process GO:0006486 . +++++ --- . --- 30 protein amino acid glycosylation, P:physiological process GO:0006508 --- +++++ . - . 358 proteolysis, P:physiological process GO:0006511 --- - . +++ + 55 ubiquitin-dependent protein catabolism, P:physiological process GO:0006512 ---- - . +++ ++ 57 ubiquitin cycle, P:physiological process GO:0006519 - ++++ . - . 13 amino acid and derivative metabolism, P:physiological process GO:0006520 -- +++ . . . 46 amino acid metabolism, P:physiological process GO:0006629 ++ +++ . --- -- 63 lipid metabolism, P:physiological process GO:0006730 ---- +++ . . . 23 one-carbon compound metabolism, P:physiological process GO:0006816 -- ++++ . . . 24 calcium ion transport, P:physiological process GO:0006817 +++++ ++ ----- ----- ----- 81 phosphate transport, P:physiological process GO:0006821 . ++++ . - - 6 chloride transport, P:physiological process GO:0006826 - ++++ . . - 5 iron ion transport, P:physiological process GO:0006879 -- +++ . . . 5 iron ion homeostasis, P:physiological process GO:0007001 ++ + . ----- . 35 chromosome organization and biogenesis (sensu Eukaryota), P:physiological process GO:0007018 --- . + ++ + 56 microtubule-based movement, P:physiological process GO:0007582 ----- . +++ +++ +++ 498 physiological process, P:physiological process GO:0007606 +++++ ---- ---- ---- ---- 20 sensory perception of chemical stimulus, P:physiological process GO:0008152 . +++ . . -- 370 metabolism, P:physiological process GO:0009072 --- . + + + 16 aromatic amino acid family metabolism, P:physiological process GO:0009190 + --- . . . 26 cyclic nucleotide biosynthesis, P:physiological process GO:0009396 -- +++++ . . - 7 folic acid and derivative biosynthesis, P:physiological process GO:0015671 +++++ --- --- --- --- 6 oxygen transport, P:physiological process GO:0016042 +++++ . -- --- - 14 lipid catabolism, P:physiological process GO:0016477 ----- . + ++ ++ 55 cell migration, P:physiological process GO:0016998 ++++ . - - -- 8 cell wall catabolism, P:physiological process GO:0018987 ---- -- ++ +++ ++ 101 osmoregulation, P:physiological process GO:0019538 ---- . + +++ . 37 protein metabolism, P:physiological process GO:0030001 . +++ . - . 17 metal ion transport, P:physiological process GO:0035046 ---- -- ++ + ++ 39 pronuclear migration, P:physiological process GO:0040011 ----- . ++ ++ ++ 106 locomotion, P:physiological process GO:0044262 +++ . . - - 6 cellular carbohydrate metabolism, P:physiological process GO:0006355 +++++ ----- -- --- -- 392 regulation of transcription, DNA-dependent, P:regulation of biological process GO:0040010 ----- . ++++ ++ +++ 592 positive regulation of growth rate, P:regulation of biological process GO:0040018 ---- - . ++ ++ 222 positive regulation of body size, P:regulation of biological process GO:0045449 --- -- + ++ ++ 173 regulation of transcription, P:regulation of biological process GO:0050819 -- ++ +++ - - 6 negative regulation of coagulation, P:regulation of biological process GO:0000003 ----- ++ ++++ +++ ++ 578 reproduction, P:reproduction GO:0007276 ----- . ++++ ++ ++ 298 gametogenesis, P:reproduction GO:0007626 ----- - ++++ +++ ++++ 624 locomotory behavior, P:response to stimulus GO:0007631 --- + ++ . . 19 feeding behavior, P:response to stimulus GO:0009613 +++++ -- -- -- -- 2 response to other organism [alt], P:response to stimulus GO:0018991 ----- . ++ ++ ++ 159 oviposition, P:response to stimulus GO:0046677 ++++ + -- -- -- 4 response to antibiotic, P:response to stimulus Over/Under +16/-44 +23/-12 +20/-14 +24/-13 +21/-14 Relative amount of over- and under-representation in groups (not gene counts) goterm cele dpul dmel dpse dvir Ng Term and Grouping GO:0005737 +++ . - - - 230 cytoplasm, C:cell part GO:0005743 --- -- ++ ++ ++ 42 mitochondrial inner membrane, C:cell part GO:0016020 +++++ ----- ---- ----- ----- 967 membrane, C:cell part GO:0016021 +++++ ---- ---- --- --- 583 integral to membrane, C:cell part GO:0045211 +++++ . -- --- --- 48 postsynaptic membrane, C:cell part GO:0005578 - ++++ . . . 16 extracellular matrix (sensu Metazoa), C:extracellular matrix GO:0005634 +++++ ---- - . . 786 nucleus, C:organelle GO:0005794 +++++ - -- -- -- 4 Golgi apparatus, C:organelle GO:0000786 + + + ----- . 37 nucleosome, C:protein complex GO:0005839 ---- -- + +++ ++ 23 proteasome core complex (sensu Eukaryota), C:protein complex GO:0005840 --- . ++ . . 130 ribosome, C:protein complex GO:0005891 --- ++ . . . 7 voltage-gated calcium channel complex, C:protein complex GO:0008076 ++++ . - - -- 29 voltage-gated potassium channel complex, C:protein complex GO:0030286 --- -- ++ ++ ++ 7 dynein complex, C:protein complex GO:0043234 ---- ++ + . . 96 protein complex, C:protein complex Over/Under +7/-6 +3/-6 +3/-4 +3/-5 +3/-5 Relative amount of over- and under-representation in groups (not gene counts)