| |||||||||
Index of /species/news/genome-summaries/gene-GO-function-association/genes6-cele5-fruitfly-v9g3
Deviations in gene matches for GO categories by species genomes.These deviations suggest where species may differ in biological function groups.Target species genomes: C.elegans, Daphnia_pulex, Dro.mel, Dro.pse, Dro.vir Source proteome: Fruitfly [version 9g3] Gene Function Associations in Species Genomes Deviations in gene matches for GO categories by species genomes. Summary of table: genes6-cele5-fruitfly-v9g3/index-summary-crosstab.txt Minimum Chi^2 per row: 5 goterm cele dpul dmel dpse dvir Ng Term and Grouping GO:0005554 ----- ----- +++++ +++++ ++++ 434 molecular_function unknown, F: GO:0004601 ++ +++ - - - 34 peroxidase activity, F:antioxidant activity GO:0004602 ++++ . . -- -- 10 glutathione peroxidase activity, F:antioxidant activity GO:0000166 ++++ ++++ -- -- -- 168 nucleotide binding, F:binding GO:0005179 --- -- + + . 21 hormone activity, F:binding GO:0005184 --- - + + ++ 22 neuropeptide hormone activity, F:binding GO:0005506 . ++++ -- . - 38 iron ion binding, F:binding GO:0005524 +++++ +++++ ---- ---- ---- 751 ATP binding, F:binding GO:0005525 ++++ + -- - . 173 GTP binding, F:binding GO:0005534 - -- ++ +++ - 7 galactose binding, F:binding GO:0005549 ----- ----- +++++ +++++ ++++ 68 odorant binding, F:binding GO:0008083 --- + . . + 29 growth factor activity, F:binding GO:0008431 --- +++++ . . - 10 vitamin E binding, F:binding GO:0042834 --- --- ++ ++ + 8 peptidoglycan binding, F:binding GO:0048029 +++ - . . . 7 monosaccharide binding, F:binding GO:0050660 --- ++++ - . . 15 FAD binding, F:binding GO:0000163 +++ --- . . . 12 protein phosphatase type 1 activity, F:catalytic activity GO:0003796 --- --- . +++ ++ 8 lysozyme activity, F:catalytic activity GO:0003840 ++ +++ -- - . 6 gamma-glutamyltransferase activity, F:catalytic activity GO:0004089 -- +++++ - . - 18 carbonate dehydratase activity, F:catalytic activity GO:0004179 . +++++ - -- -- 27 membrane alanyl aminopeptidase activity, F:catalytic activity GO:0004192 +++++ . - - -- 7 cathepsin D activity, F:catalytic activity GO:0004194 +++++ --- - . -- 14 pepsin A activity, F:catalytic activity GO:0004197 +++++ . - -- - 78 cysteine-type endopeptidase activity, F:catalytic activity GO:0004222 ++++ + -- - - 60 metalloendopeptidase activity, F:catalytic activity GO:0004238 + +++++ -- -- - 7 meprin A activity, F:catalytic activity GO:0004252 ----- +++ ++ . + 152 serine-type endopeptidase activity, F:catalytic activity GO:0004263 ----- +++++ +++ . . 159 chymotrypsin activity, F:catalytic activity GO:0004295 ----- ++++ ++++ + . 174 trypsin activity, F:catalytic activity GO:0004383 +++ - . . - 28 guanylate cyclase activity, F:catalytic activity GO:0004467 . +++++ -- - -- 12 long-chain-fatty-acid-CoA ligase activity, F:catalytic activity GO:0004485 . +++++ - - - 4 methylcrotonoyl-CoA carboxylase activity, F:catalytic activity GO:0004497 + ++++ -- - - 100 monooxygenase activity, F:catalytic activity GO:0004568 --- ++++ - . . 20 chitinase activity, F:catalytic activity GO:0004656 --- . . ++++ - 17 procollagen-proline 4-dioxygenase activity, F:catalytic activity GO:0004672 +++++ ++ --- -- -- 145 protein kinase activity, F:catalytic activity GO:0004674 +++++ + -- -- - 168 protein serine/threonine kinase activity, F:catalytic activity GO:0004714 . ++++ . -- . 35 transmembrane receptor protein tyrosine kinase activity, F:catalytic activity GO:0004722 ++++ -- - . . 37 protein serine/threonine phosphatase activity, F:catalytic activity GO:0004806 -- ++++ - . - 39 triacylglycerol lipase activity, F:catalytic activity GO:0005395 ++++ +++ -- - - 7 eye pigment precursor transporter activity, F:catalytic activity GO:0008146 --- +++++ - - . 23 sulfotransferase activity, F:catalytic activity GO:0008376 -- ++++ -- - . 8 acetylgalactosaminyltransferase activity, F:catalytic activity GO:0008378 . ++++ -- - . 10 galactosyltransferase activity, F:catalytic activity GO:0008483 + ++++ -- - - 21 transaminase activity, F:catalytic activity GO:0008533 ++ +++++ --- -- -- 20 astacin activity, F:catalytic activity GO:0008745 --- --- ++ ++ + 8 N-acetylmuramoyl-L-alanine amidase activity, F:catalytic activity GO:0015020 +++++ --- - - . 35 glucuronosyltransferase activity, F:catalytic activity GO:0015036 +++ + . - -- 14 disulfide oxidoreductase activity, F:catalytic activity GO:0016207 . -- . . +++ 4 4-coumarate-CoA ligase activity, F:catalytic activity GO:0016229 +++ +++ - -- -- 10 steroid dehydrogenase activity, F:catalytic activity GO:0016274 -- - . +++ . 7 protein-arginine N-methyltransferase activity, F:catalytic activity GO:0016401 ++++ . -- -- . 6 palmitoyl-CoA oxidase activity, F:catalytic activity GO:0016491 + +++++ -- - -- 280 oxidoreductase activity, F:catalytic activity GO:0016511 +++++ -- . - . 12 endothelin-converting enzyme activity, F:catalytic activity GO:0016614 ++ +++ -- - - 40 oxidoreductase activity, acting on CH-OH group of donors, F:catalytic activity GO:0016620 +++ ++ . - - 10 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, F:catalytic activity GO:0016709 +++ . . -- -- 11 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen, F:catalytic activity GO:0016747 +++ ++ -- -- . 12 transferase activity, transferring groups other than amino-acyl groups, F:catalytic activity GO:0016757 . +++ -- . . 39 transferase activity, transferring glycosyl groups, F:catalytic activity GO:0016799 -- ++++ . . . 44 hydrolase activity, hydrolyzing N-glycosyl compounds, F:catalytic activity GO:0016919 . - - ++++ - 3 nardilysin activity, F:catalytic activity GO:0017051 -- +++++ - - - 3 retinol dehydratase activity, F:catalytic activity GO:0042626 ++++ +++++ --- --- --- 71 ATPase activity, coupled to transmembrane movement of substances, F:catalytic activity GO:0042708 --- - . + ++ 9 elastase activity, F:catalytic activity GO:0046920 . +++++ -- . - 8 alpha(1,3)-fucosyltransferase activity, F:catalytic activity GO:0004867 ++++ -- . . - 69 serine-type endopeptidase inhibitor activity, F:enzyme regulator activity GO:0008605 - - +++ . . 3 protein kinase CK2 regulator activity, F:enzyme regulator activity GO:0030414 +++ -- - . . 9 protease inhibitor activity, F:enzyme regulator activity GO:0004872 +++++ + -- - - 149 receptor activity, F:signal transducer activity GO:0004890 +++++ . - -- - 15 GABA-A receptor activity, F:signal transducer activity GO:0004983 +++ ++ -- - - 11 neuropeptide Y receptor activity, F:signal transducer activity GO:0004984 ----- ----- +++ +++++ +++ 40 olfactory receptor activity, F:signal transducer activity GO:0004995 ++ ++++ -- - - 10 tachykinin receptor activity, F:signal transducer activity GO:0008020 -- +++++ -- - - 11 G-protein coupled photoreceptor activity, F:signal transducer activity GO:0008188 +++ +++ -- - - 54 neuropeptide receptor activity, F:signal transducer activity GO:0008527 ----- ----- ++++ ++++ +++ 35 taste receptor activity, F:signal transducer activity GO:0015464 ++++ ++ - --- - 16 acetylcholine receptor activity, F:signal transducer activity GO:0003735 +++ - - . . 178 structural constituent of ribosome, F:structural molecule activity GO:0005201 +++ + -- . . 15 extracellular matrix structural constituent, F:structural molecule activity GO:0005213 -- --- + ++ + 5 structural constituent of chorion (sensu Insecta), F:structural molecule activity GO:0005214 ---- ++ - + . 38 structural constituent of cuticle (sensu Insecta), F:structural molecule activity GO:0008010 ----- + . + + 33 structural constituent of larval cuticle (sensu Insecta), F:structural molecule activity GO:0042302 ---- +++++ . . . 18 structural constituent of cuticle, F:structural molecule activity GO:0030528 -- --- . ++ ++ 223 transcription regulator activity, F:transcription regulator activity GO:0004889 +++++ + - --- - 18 nicotinic acetylcholine-activated cation-selective channel activity, F:transporter activity GO:0005249 ++++ + . - -- 34 voltage-gated potassium channel activity, F:transporter activity GO:0005253 . ++++ - . -- 14 anion channel activity, F:transporter activity GO:0005254 +++ ++ - - - 17 chloride channel activity, F:transporter activity GO:0005272 --- . . + + 18 sodium channel activity, F:transporter activity GO:0008507 --- -- + + + 7 sodium:iodide symporter activity, F:transporter activity GO:0015114 +++++ - - - . 11 phosphate transporter activity, F:transporter activity GO:0015239 +++++ -- -- - . 9 multidrug transporter activity, F:transporter activity GO:0015291 ++++ -- . . . 8 porter activity, F:transporter activity GO:0015377 . +++++ - -- - 9 cation:chloride symporter activity, F:transporter activity GO:0015381 . ++++ - - - 11 high affinity sulfate permease activity, F:transporter activity GO:0015450 . -- - +++ . 24 protein translocase activity, F:transporter activity GO:0015646 ++++ +++ -- - -- 5 permease activity, F:transporter activity Over/Under +45/-33 +48/-23 +11/-31 +14/-19 +9/-17 Relative amount of over- and under-representation in groups (not gene counts) goterm cele dpul dmel dpse dvir Ng Term and Grouping GO:0016065 - -- +++ + -- 2 , : Over/Under +0/-0 +0/-1 +1/-0 +0/-0 +0/-1 Relative amount of over- and under-representation in groups (not gene counts) goterm cele dpul dmel dpse dvir Ng Term and Grouping GO:0000004 ----- ----- +++++ +++++ +++ 400 biological_process unknown, P: GO:0000165 +++ - - . . 76 MAPKKK cascade, P:cellular process GO:0007169 . +++ . -- - 45 transmembrane receptor protein tyrosine kinase signaling pathway, P:cellular process GO:0007217 ++ +++ -- - - 9 tachykinin signaling pathway, P:cellular process GO:0007218 --- - . + + 23 neuropeptide signaling pathway, P:cellular process GO:0007270 +++++ + -- --- - 57 nerve-nerve synaptic transmission, P:cellular process GO:0007274 +++ + - - - 39 neuromuscular synaptic transmission, P:cellular process GO:0046845 ++++ . -- - . 12 branched duct epithelial cell fate determination (sensu Insecta), P:cellular process GO:0001737 ++++ -- - . . 14 establishment of wing hair orientation, P:development GO:0007164 +++ . -- . . 8 establishment of tissue polarity, P:development GO:0007447 +++ + -- . . 21 imaginal disc pattern formation, P:development GO:0007530 --- --- ++ + ++ 42 sex determination, P:development GO:0035151 ++++ -- . . . 14 regulation of tracheal tube size, P:development GO:0050774 -- - ++++ . - 3 negative regulation of dendrite morphogenesis, P:development GO:0006036 - +++++ - - . 5 cuticle chitin catabolism, P:physiological process GO:0006118 +++ ++++ --- - - 284 electron transport, P:physiological process GO:0006182 ++++ . . . - 5 cGMP biosynthesis, P:physiological process GO:0006334 +++ . . --- . 40 nucleosome assembly, P:physiological process GO:0006366 -- --- . ++ ++ 168 transcription from RNA polymerase II promoter, P:physiological process GO:0006399 . ++++ -- . - 17 tRNA metabolism, P:physiological process GO:0006468 +++++ ++ -- -- - 309 protein amino acid phosphorylation, P:physiological process GO:0006470 ++++ --- . . . 79 protein amino acid dephosphorylation, P:physiological process GO:0006486 ++ +++++ --- - -- 82 protein amino acid glycosylation, P:physiological process GO:0006508 . +++ . . -- 668 proteolysis, P:physiological process GO:0006520 +++ ++++ -- - -- 126 amino acid metabolism, P:physiological process GO:0006551 . ++++ - - - 7 leucine metabolism, P:physiological process GO:0006626 . - - +++ . 31 protein targeting to mitochondrion, P:physiological process GO:0006633 + +++ -- . - 34 fatty acid biosynthesis, P:physiological process GO:0006635 +++ +++ -- -- - 29 fatty acid beta-oxidation, P:physiological process GO:0006694 +++ ++ - - - 10 steroid biosynthesis, P:physiological process GO:0006726 ++++ ++ -- - - 14 eye pigment biosynthesis, P:physiological process GO:0006727 +++ + -- . - 20 ommochrome biosynthesis, P:physiological process GO:0006730 - +++++ - . -- 24 one-carbon compound metabolism, P:physiological process GO:0006783 - +++ . . . 9 heme biosynthesis, P:physiological process GO:0006796 +++++ - - . . 44 phosphate metabolism, P:physiological process GO:0006812 ++++ + -- -- . 272 cation transport, P:physiological process GO:0006813 +++++ . - -- - 73 potassium ion transport, P:physiological process GO:0006817 +++++ . --- - . 56 phosphate transport, P:physiological process GO:0006820 ++++ ++ - -- -- 58 anion transport, P:physiological process GO:0006821 . +++++ - -- - 15 chloride transport, P:physiological process GO:0006836 -- +++ . . . 23 neurotransmitter transport, P:physiological process GO:0006856 ++++ ++ -- - - 8 eye pigment precursor transport, P:physiological process GO:0006869 . ++++ - - -- 65 lipid transport, P:physiological process GO:0006936 ++++ . . -- . 110 muscle contraction, P:physiological process GO:0006955 --- - + . + 44 immune response, P:physiological process GO:0006960 --- -- . ++ + 13 antimicrobial humoral response (sensu Protostomia), P:physiological process GO:0006961 - --- . + ++ 18 antibacterial humoral response (sensu Protostomia), P:physiological process GO:0006979 ++++ ++ -- - - 22 response to oxidative stress, P:physiological process GO:0007010 +++ . . -- - 215 cytoskeleton organization and biogenesis, P:physiological process GO:0007594 -- -- ++++ . - 3 puparial adhesion, P:physiological process GO:0007600 . +++ -- . . 24 sensory perception, P:physiological process GO:0007601 - ++++ - . - 66 visual perception, P:physiological process GO:0007606 ---- ----- ++++ ++ + 19 sensory perception of chemical stimulus, P:physiological process GO:0007608 ----- ----- ++ ++++ ++ 53 sensory perception of smell, P:physiological process GO:0008202 +++++ . -- -- - 105 steroid metabolism, P:physiological process GO:0008283 --- -- + + +++ 238 cell proliferation, P:physiological process GO:0008363 -- - . +++ + 3 larval cuticle biosynthesis (sensu Insecta), P:physiological process GO:0008652 . +++ . - -- 46 amino acid biosynthesis, P:physiological process GO:0009069 . +++ - . - 6 serine family amino acid metabolism, P:physiological process GO:0009166 --- . - . ++++ 10 nucleotide catabolism, P:physiological process GO:0009247 -- ++++ -- - + 6 glycolipid biosynthesis, P:physiological process GO:0009253 --- --- ++ ++ + 8 peptidoglycan catabolism, P:physiological process GO:0015711 +++ - - . . 9 organic anion transport, P:physiological process GO:0015893 +++++ -- . - - 12 drug transport, P:physiological process GO:0016082 . ++++ - -- . 14 synaptic vesicle priming, P:physiological process GO:0018401 --- . . +++ - 15 peptidyl-proline hydroxylation to 4-hydroxy-L-proline, P:physiological process GO:0030431 . +++ . - - 9 sleep, P:physiological process GO:0042445 . +++ . - -- 4 hormone metabolism, P:physiological process GO:0046701 . +++ . - -- 4 insecticide catabolism, P:physiological process GO:0050909 ---- ----- ++++ ++ ++ 45 sensory perception of taste, P:physiological process GO:0006357 - --- . . +++ 502 regulation of transcription from RNA polymerase II promoter, P:regulation of biological process GO:0007088 ++++ - -- . . 27 regulation of mitosis, P:regulation of biological process GO:0009794 +++ - . . . 8 regulation of progression through embryonic mitotic cell cycle, P:regulation of biological process GO:0009889 . +++ -- . . 5 regulation of biosynthesis, P:regulation of biological process GO:0042058 - +++++ - - - 4 regulation of epidermal growth factor receptor signaling pathway, P:regulation of biological process GO:0045187 -- ++++ . - - 10 regulation of circadian sleep/wake cycle, sleep, P:regulation of biological process GO:0045946 ++++ . . - - 10 positive regulation of translation, P:regulation of biological process GO:0007283 . --- +++ . . 65 spermatogenesis, P:reproduction GO:0046843 ++++ + - -- - 21 dorsal appendage formation, P:reproduction GO:0007602 - +++ . - - 37 phototransduction, P:response to stimulus GO:0009636 +++++ - . -- - 123 response to toxin, P:response to stimulus GO:0019236 -- --- + ++ ++ 7 response to pheromone, P:response to stimulus GO:0042221 . -- +++ - . 25 response to chemical stimulus, P:response to stimulus GO:0042742 ---- ---- . ++++ +++ 31 defense response to bacterium, P:response to stimulus GO:0045087 ---- . ++ + . 19 innate immune response, P:response to stimulus GO:0045297 - -- ++++ . - 3 post-mating behavior, P:response to stimulus GO:0045433 --- . ++ . . 13 male courtship behavior (sensu Insecta), song production, P:response to stimulus GO:0046692 -- --- . + ++ 7 sperm competition, P:response to stimulus GO:0050829 ---- - + ++ . 13 defense response to Gram-negative bacterium, P:response to stimulus GO:0050830 --- -- + ++ + 13 defense response to Gram-positive bacterium, P:response to stimulus GO:0050832 --- . . + + 7 defense response to fungus, P:response to stimulus Over/Under +37/-27 +35/-23 +13/-23 +14/-15 +12/-9 Relative amount of over- and under-representation in groups (not gene counts) goterm cele dpul dmel dpse dvir Ng Term and Grouping GO:0008372 ----- ----- +++++ +++++ +++ 490 cellular_component unknown, C: GO:0005737 ++++ + -- . . 455 cytoplasm, C:cell part GO:0005792 + ++++ -- -- . 87 microsome, C:cell part GO:0005829 ++++ . - -- . 71 cytosol, C:cell part GO:0005834 +++ . . -- . 25 heterotrimeric G-protein complex, C:cell part GO:0005886 ++ +++ - - -- 321 plasma membrane, C:cell part GO:0016020 ++++ ++++ --- -- -- 587 membrane, C:cell part GO:0017090 + +++++ -- -- - 7 meprin A complex, C:cell part GO:0045211 +++++ + -- --- -- 36 postsynaptic membrane, C:cell part GO:0005576 ----- -- + ++++ +++ 263 extracellular region, C:extracellular region GO:0005634 -- ---- . ++ +++ 1165 nucleus, C:organelle GO:0005739 ++++ + -- . - 163 mitochondrion, C:organelle GO:0000164 ++++ -- -- . . 7 protein phosphatase type 1 complex, C:protein complex GO:0000786 +++ . . ---- + 30 nucleosome, C:protein complex GO:0005892 +++++ + - --- - 18 nicotinic acetylcholine-gated receptor-channel complex, C:protein complex GO:0008076 +++ + . - -- 27 voltage-gated potassium channel complex, C:protein complex GO:0016222 --- . - ++++ - 17 procollagen-proline, 2-oxoglutarate-4-dioxygenase complex, C:protein complex GO:0030286 --- --- . +++ + 23 dynein complex, C:protein complex GO:0043190 . +++++ -- -- -- 56 ATP-binding cassette (ABC) transporter complex, C:protein complex Over/Under +11/-5 +5/-5 +1/-8 +5/-9 +3/-5 Relative amount of over- and under-representation in groups (not gene counts) |