Drosophila species genome statistics
| Abbr. |
Species |
T |
Nt |
E |
Ne |
Me |
%Gt |
%Ge |
Ge/Gt |
% GC |
% Gaps |
% Repeats |
|
|
|
| Dmel |
Drosophila melanogaster |
169 |
14 |
120 |
6 |
120 |
100.0 |
100.0 |
100 |
42.5 |
0.0 |
6 |
|
|
|
| Dsim |
Drosophila simulans |
143 |
17 |
117 |
7 |
117 |
99.2 |
90.4 |
91 |
42.5 |
10.7 |
13 |
|
|
|
| Dsec |
Drosophila sechellia |
167 |
14730 |
100 |
20 |
114 |
99.7 |
85.9 |
86 |
42.1 |
5.6 |
27 |
|
|
|
| Dyak |
Drosophila yakuba |
169 |
20 |
127 |
7 |
116 |
99.5 |
96.8 |
97 |
42.3 |
3.5 |
24 |
|
|
|
| Dere |
Drosophila erecta |
153 |
5124 |
125 |
7 |
116 |
99.4 |
98.6 |
99 |
42.3 |
5.0 |
19 |
|
|
|
| Dana |
Drosophila ananassae |
231 |
13749 |
120 |
25 |
113 |
97.6 |
93.7 |
96 |
42.0 |
7.5 |
44 |
|
|
|
| Dper |
Drosophila persimilis |
188 |
12838 |
102 |
25 |
110 |
95.7 |
74.2 |
78 |
44.9 |
6.8 |
30 |
|
|
|
| Dpse |
Drosophila pseudoobscura |
153 |
4896 |
125 |
12 |
111 |
96.1 |
94.9 |
99 |
45.2 |
4.4 |
11 |
|
|
|
| Dwil |
Drosophila willistoni |
237 |
14927 |
140 |
24 |
103 |
95.4 |
89.0 |
93 |
37.2 |
5.1 |
34 |
|
|
|
| Dmoj |
Drosophila mojavensis |
194 |
6841 |
150 |
9 |
102 |
94.6 |
92.7 |
98 |
39.5 |
7.1 |
22 |
|
|
|
| Dvir |
Drosophila virilis |
206 |
13530 |
140 |
15 |
104 |
94.8 |
90.3 |
95 |
40.0 |
8.2 |
28 |
|
|
|
| Dgri |
Drosophila grimshawi |
200 |
17440 |
140 |
12 |
102 |
94.1 |
87.0 |
92 |
38.0 |
7.3 |
25 |
|
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| Table 1. Drosophila
species genomes, with sizes, abbreviation, Dmel genes found, and sequencing
centers for CAF1 assemblies. Total assembly size (T), euchromatin (E) size,
and Dmel (Me) DNA homology sizes, in Megabases, total (Nt) and euchromatic
scaffold count (Ne), and percentages of Dmel genes found in total (%Gt) and
euchromatic (%Ge) scaffolds, GC content and assembly gaps (Gaps). The major
euchromatic scaffolds matched to Dmel euchromatin are shown at
DroSpeGe/maps/muller-elements/. Repeat coverage is from the ReAS analysis of
Ruiqiang Li and colleagues.
Species are listed by increasing phylogenetic distance from Dmel. |
|
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|
| The values E, Ne, Ge/Gt are particular indicators of
quality of the assembly. Dere and Dmoj are best, next to Dmel. |
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|
D.G. Gilbert, April 2007
|