Subject: BRIEF INFO about these DroSpeGe Annotations
Date: Wed, 21 Sep 2005 16:05:18 -0500 (EST)
From: Don Gilbert <gilbertd@bio.indiana.edu>

... I've done tblastn of 9 eukaryote proteomes against the new dros. assemblies.
Documentation is absent just now (in my working folders, manuscript
is being written now...), but you are welcome to ask me what you need to 
know.

The GFF feature locations for each d. species are at
  http://insects.eugenes.org/species/data/dana/gff/   {etc. for each /dxxx/ species}
dana-dmel-algn.gff.gz   15-Aug-2005 16:36   427k  = summarized dmel dna blastn aligments
dana-dmel-dna.gff0.gz   10-Aug-2005 18:59   7.0M  = all hits of dmel dna blastn aligments
dana-markers.gff.gz     20-Aug-2005 16:51    12k  = dmel marker genes
dana-prot9.gff.gz       15-Aug-2005 20:39  15.0M  = 9 proteome tblastn
dana-scaffolds.gff      09-Aug-2005 20:38   880k  = dspp-scaffolds/chromosomes as gff
dros-dana-micsat.gff.gz 20-Aug-2005 12:32    17k  = dros. microsattelites

Raw data is at ftp://ftp.eugenes.org/eugenes/genomes/
dana-scaffolds.gff        880 KB  8/9/05 --- dspp-scaffolds/chromosomes as gff
dana_ag01aug05db.tgz      59445 KB        8/5/05  --- dspp-scaffolds blast database
danadmelc.blout.tgz       25813 KB        8/10/05 --- dspp-dna x dmel-dna blastn output (format #9)
dana-dmel-dna.gff.gz      7206 KB         8/10/05 --- dspp-dna x dmel-dna blastn to gff
danaprot9.blout.tgz       40232 KB        8/10/05 --- dspp-dna x 9 euk. proteomes  tblastn output (format #9)
dana-prot9.gff.gz         12306 KB        8/10/05 --- dspp-dna x 9 euk. proteomes  tblastn to gff

Ditto for other dros. species.
The prot9 data set = Dros. melanogaster, C.elegans, Bee, Mosquito,
  Human, Mouse, Zebrafish, Arabidopsis,   Yeast,
(find at ftp://ftp.eugenes.org/eugenes/proteomes/)

- Don Gilbert
-- d.gilbert--bioinformatics--indiana-u--bloomington-in-47405
-- gilbertd@indiana.edu--http://marmot.bio.indiana.edu/