#========== snap predictions/ training per species ========

set dp=dvir
set species=virilis
set dpid=${dp}_caf051209
set scd=$sc/${dp}3
set scaffoldgff=$scd/$dp-scaffolds.gff
set chrfasta=$scd/$dpid.fa.gz

(source snapmake.script) >& log.snapmake.$dpid &
#----

set dp=dgri
set species=grimshawi
set dpid=${dp}_caf051209
set scd=$sc/${dp}3
set scaffoldgff=$scd/$dp-scaffolds.gff
set chrfasta=$scd/$dpid.fa.gz

(source snapmake.script) >& log.snapmake.$dpid &
#----

set dp=dmoj
set species=mojavensis
set dpid=${dp}_caf051209
set scd=$sc/${dp}3
set scaffoldgff=$scd/$dp-scaffolds.gff
set chrfasta=$scd/$dpid.fa.gz

(source snapmake.script) >& log.snapmake.$dpid &
#----

set dp=dana
set species=ananassae
set dpid=${dp}_caf051209
set scd=$sc/${dp}3
set scaffoldgff=$scd/$dp-scaffolds.gff
set chrfasta=$scd/$dpid.fa.gz

(source snapmake.script) >& log.snapmake.$dpid &
#----

set dp=dere
set species=erecta
set dpid=${dp}_caf051209
set scd=$sc/${dp}3
set scaffoldgff=$scd/$dp-scaffolds.gff
set chrfasta=$scd/$dpid.fa.gz

(source snapmake.script) >& log.snapmake.$dpid &
#----

set dp=dsec
set species=sechellia
set dpid=${dp}_br051028
set scd=$sc/${dp}1
set scaffoldgff=$scd/$dp-scaffolds.gff
set chrfasta=$scd/$dpid.fa.gz

(source snapmake.script) >& log.snapmake.$dpid &
#----

set dp=dper
set species=persimilis
set dpid=${dp}_br051028
set scd=$sc/${dp}1
set scaffoldgff=$scd/$dp-scaffolds.gff
set chrfasta=$scd/$dpid.fa.gz

(source snapmake.script) >& log.snapmake.$dpid &
#----

set dp=dyak
set species=yakuba
set dpid=${dp}_caf051213
set scd=$sc/${dp}3
set scaffoldgff=$scd/$dp-chromosomes.gff
set chrfasta=$scd/$dpid.fa.gz

(source snapmake.script) >& log.snapmake.$dpid &
#----

set dp=dpse
set species=pseudoobscura
set dpid=${dp}_r201
set scd=$sc/${dp}2
set scaffoldgff=$scd/$dp-chromosomes.gff
set chrfasta=$scd/$dp-chromosomes-r2.0.fa.gz
set trainfasta=$scd/dpse_r201shred5.fa

(source snapmake.script) >& log.snapmake.$dpid &
#----

set dp=dsim
set species=simulans
set dpid=${dp}_wu050602
set scd=$sc/${dp}2
set scaffoldgff=$scd/$dp-chromosomes.gff
set chrfasta=$scd/$dpid.fa.gz
set trainfasta=$scd/xxx

(source snapmake.script) >& log.snapmake.$dpid &
#----