>CG31020-PA melanogaster sanpodo MSQHNYTNPAFCQNSEYYPVPSGNSSRVESIYNRSLQMNFGAAPPRATRDPREGPLRMQRSMSTRSVTRKQHQQQQQQQH QQQIHQQHLAQQQQHQPQSSSGRYALVPLEELNSSRASRYAIVPGQAAQRLARSQDNLDRYGSRHGLHEEEEPHSFHEEP HQETQFASLPPILNLPPKPRNINNNTNANQTQIKHAFSSDFGSKTFLIVDKNSNQRYQMVPTAEDEELVDENQEIIQMHN GRAHRYAVVPTDADDDDLAEEQEQQETCLSNMELSRQYAARTSTPQQKNAAAATRALHELLTTPRKMQPPPRLAHSTPRN AAHHEQLQLERRLEIYKSQQIYQSQQVGAVVGVPPTLPLRQNRLSPQRLHYETVKPLPMQIADRSMAVISPRVQEQGQEQ EREQDMSSIQGKGKKNSSYPQKMANATITLAVVSLMLVLGSTMNAGLIIYMIAHLGKSFYLQFSLVASFSGMGLGFLGFK SRHCEWLPNRSYSSGYILVTVFCLFKSCGLLVILVVDPFPGFPVHDVTTGVILGLSTFTMFFIGLGVLGSLWCHRPPPDN RVNVV =============================== BLASTP 2.2.13 [Nov-27-2005] ** NO LOW-COMPLEXITY FILTER ** Database: dpulex-translation 48,805 sequences; 14,337,828 total letters Query= CG31020-PA melanogaster sanpodo (565 letters) Score E Sequences producing significant alignments: (bits) Value DP_DGIL_SNO_00031586 60 3e-09 MapView FastA GenBank EMBL GFF DP_DGIL_SNO_00003055 50 3e-06 MapView FastA GenBank EMBL GFF DP_DGIL_SNO_00013368 48 9e-06 MapView FastA GenBank EMBL GFF DP_DGIL_SNO_00003549 47 2e-05 MapView FastA GenBank EMBL GFF DP_DGIL_SNO_00001384 47 2e-05 MapView FastA GenBank EMBL GFF DP_DGIL_SNO_00031586 MapView FastA GenBank EMBL GFF Length = 609 Score = 60.1 bits (196), Expect = 3e-09 Identities = 70/328 (21%), Positives = 134/328 (40%), Gaps = 37/328 (11%) Query: 46 RATRDPREGPLRMQRSMSTRSVTRKQHQQQQQQQHQQQIHQQHLAQQQQHQPQSSSGRYA 105 ++ + P ++ ++ + QQQQQQQ+QQQ +QQ+ Q QQ+ Q +G Sbjct: 284 QSQQGPMANTIQAMQAQPGMQAAMQNIQQQQQQQQQQQQQQQQQNQPQQQNMQQGTGPPG 343 Query: 106 LVPLEELNSSRASRYAIVPGQAAQRLARSQDNLDRYGSRHGLHEEEEPHSFHEEPHQETQ 165 ++ +N+ ++ V Q Q+ R Q + + + + ++++ H++ +Q+ Sbjct: 344 MMGNVGMNAGPPNQQQTVQQQQQQQWLRQQQHQQQMMAMQRQQQQQ-----HQQQQQQQG 398 Query: 166 FASLPPILNLPPKPRNINNNTNA-----NQTQIKHAFSSDFGSKTFLIVDKNSNQRYQMV 220 F PP+ ++ P+ R + Q Q +H F + F+ + Q Sbjct: 399 FQQPPPVQHFGPRARQPLPSMGGFPQQQQQQQQQHGFGGNGDGNQFMSPNNQGQFGGQQQ 458 Query: 221 PTAEDEELVDENQEIIQMHNGRAHRYAVVPTDAD----DDDLAEEQEQQETCLSNMELSR 276 PT ++L+ + Q QM N + P +++ +Q+ T S S Sbjct: 459 PTM--QQLLQQQQ---QMKNTPPPTMSPSPQQQGGMMVPPNVSPQQQLMHTVRSPPPSSL 513 Query: 277 QYAARTSTPQQKNAAAATRALHELLTTPRKMQPPPRLAHSTPRNAAHHEQLQLERRLEIY 336 R+ P + +PR+ P PR+A +P HH + + Sbjct: 514 PQTVRSPQPNPSPRLGPS-------PSPRQPAPSPRMATQSP----HHSMV-----AAVA 557 Query: 337 KSQQIYQSQQVGAVVGVPPTLPLRQNRL 364 QQ Q QQ+G G P+ L Q+++ Sbjct: 558 AQQQQQQHQQLGG--GHDPSDALMQSQM 583 ................ Daphnia pulex genome assembly (JGI-2006-09) Name: DP_DGIL_SNO_00031586 Class: Sequence Type: gene Source: DGIL_SNO Position: scaffold_191:46259..48151 (+ strand) Length: 1893 Score: 253.627 orig_id: scaffold_191-snapho.9 >DP_DGIL_SNO_00031586.tr ATGATGAACTCTATAGGGGGTATCCGACCTCAACATCCGCAACAACAGCAATCGGTCGGG GGTATGGGCGCCGTGAATCCAGCGATGGTGATGCCTCCTCCTCAGATGATGCAGCACCCT CGTCCCATGAACATGCAGCCTGTTGGTATGCCGGGCAATATGGTCGGCACCGGTATGCAA GTCAATCAAGTCGCTGGAGGTGTACCTTCTGGACCAAACCCAATGGGTGGCATGGGAGGT GGCGGCATGCCCATCAACAATATGCAAGGGAATCGCATGGGCATGGGTGGCGACCAACAA TGGGGGGGACCTCGGTTTGTCAATCCTGCTCAAGGAGGTCCAGGACCCAATCAAGTTATG GGTCAGCAACAGCAGCAACAACAGATGCGGCCCATGGCTCCCAATAACATGATGGCAGCT CAGCAACAGCAACAAGGCCAAGCATCACCTGCTATGGCTATGGGCAATGCGCAAGGAGCT ATGATGGGTCCTGGAAGTGGAGTTCCTGGTGTCGGACCTAATGTTGCGCAACAGCAACAA CAGGTAAATTCCGTTCAACAACAACCCCAGGCGCAGATACAGCCAGGAACTTTGGCGCAG ATACCTGTGAGTGCGGGTGGAATTGCTGGTCCAGGAGGAGCCCAGCGCCCTCTGCCACAA GCCCTCCACCAACTCTTGCAGACGCTCAAGTCACCAAGCACACCTCAACAGCAACAGCAA GTAGTGCAGATTCTACGTAGCAATCCCCAGCTGATGGCAGCCTTCATCAAGCAACGCTCT GTTCTCCAACAACAGCAGCAGCAAAATCAAAACCAGCAACCACAGCAGGGTCAACAAGTC CCCAACCAACAGAGCCAACAAGGTCCGATGGCCAACACCATACAAGCCATGCAAGCCCAA CCAGGAATGCAAGCAGCCATGCAGAATATTCAGCAGCAACAACAACAGCAGCAGCAACAA CAACAACAGCAACAGCAGCAAAATCAACCCCAACAACAAAACATGCAACAAGGAACTGGT CCGCCTGGTATGATGGGCAATGTTGGTATGAATGCAGGTCCACCGAATCAACAACAAACG GTTCAGCAGCAACAACAGCAGCAATGGTTGAGACAACAACAGCACCAACAACAAATGATG GCAATGCAGAGGCAACAGCAGCAGCAGCACCAACAACAGCAGCAGCAACAGGGCTTCCAA CAACCACCTCCAGTGCAGCATTTTGGGCCAAGAGCAAGGCAGCCTTTACCGAGTATGGGG GGCTTTCCTCAGCAGCAGCAGCAACAGCAGCAGCAGCACGGCTTTGGAGGCAACGGAGAT GGCAACCAGTTTATGAGTCCCAACAACCAGGGTCAATTTGGCGGGCAACAGCAGCCAACG ATGCAACAACTTTTGCAGCAGCAGCAGCAGATGAAAAACACGCCTCCTCCGACCATGTCG CCTTCGCCGCAGCAACAAGGCGGCATGATGGTACCTCCTAACGTTTCTCCCCAACAACAG TTGATGCATACCGTCCGATCACCGCCTCCGTCGTCTTTACCACAGACGGTTCGCTCCCCG CAGCCCAATCCTTCGCCCCGGCTCGGTCCTTCGCCTTCTCCGCGCCAGCCAGCTCCTTCG CCTCGGATGGCCACGCAGTCCCCTCATCACTCGATGGTAGCCGCAGTGGCAGCGCAGCAA CAACAGCAGCAACACCAACAGCTTGGAGGAGGCCACGACCCGTCCGACGCCCTCATGCAG TCACAGATGATGAGCAACGTTCAGGATCAACAGCAGCAGCAGCTGGAAACGCCGCAGGAT CAGCTTTCCAAGTTTGTCGAGGGACTTTGA >DP_DGIL_SNO_00031586.aa MMNSIGGIRPQHPQQQQSVGGMGAVNPAMVMPPPQMMQHPRPMNMQPVGM PGNMVGTGMQVNQVAGGVPSGPNPMGGMGGGGMPINNMQGNRMGMGGDQQ WGGPRFVNPAQGGPGPNQVMGQQQQQQQMRPMAPNNMMAAQQQQQGQASP AMAMGNAQGAMMGPGSGVPGVGPNVAQQQQQVNSVQQQPQAQIQPGTLAQ IPVSAGGIAGPGGAQRPLPQALHQLLQTLKSPSTPQQQQQVVQILRSNPQ LMAAFIKQRSVLQQQQQQNQNQQPQQGQQVPNQQSQQGPMANTIQAMQAQ PGMQAAMQNIQQQQQQQQQQQQQQQQQNQPQQQNMQQGTGPPGMMGNVGM NAGPPNQQQTVQQQQQQQWLRQQQHQQQMMAMQRQQQQQHQQQQQQQGFQ QPPPVQHFGPRARQPLPSMGGFPQQQQQQQQQHGFGGNGDGNQFMSPNNQ GQFGGQQQPTMQQLLQQQQQMKNTPPPTMSPSPQQQGGMMVPPNVSPQQQ LMHTVRSPPPSSLPQTVRSPQPNPSPRLGPSPSPRQPAPSPRMATQSPHH SMVAAVAAQQQQQQHQQLGGGHDPSDALMQSQMMSNVQDQQQQQLETPQD QLSKFVEGL* ================================================== TBLASTN 2.2.13 [Nov-27-2005] Database: dpulex-chromosome 9080 sequences; 227,063,090 total letters Expect cutoff 0.01 ***** No hits found ****** Database: dpulex-chromosome Posted date: Sep 24, 2006 2:40 PM Number of letters in database: 227,063,090 Number of sequences in database: 9080 Lambda K H 0.227 0.0905 0.238 Gapped Lambda K H 0.195 0.0320 0.100 Matrix: BLOSUM45 Gap Penalties: Existence: 14, Extension: 2 Number of Hits to DB: 488,944,619 Number of Sequences: 9080 Number of extensions: 18549735 Number of successful extensions: 12170 Number of sequences better than 1.0: 0 Number of HSP's better than 1.0 without gapping: 514 Number of HSP's successfully gapped in prelim test: 149 Number of HSP's that attempted gapping in prelim test: 7942 Number of HSP's gapped (non-prelim): 6317 length of query: 565 length of database: 75,687,696 effective HSP length: 165 effective length of query: 400 effective length of database: 74,189,496 effective search space: 29675798400 effective search space used: 29675798400 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 22 ( 7.2 bits) X2: 53 (14.9 bits) X3: 88 (24.8 bits) S1: 56 (21.8 bits) S2: 107 (35.1 bits) ================== TBLASTN 2.2.13 [Nov-27-2005] Expect cutoff 10.0 Database: dpulex-chromosome 9080 sequences; 227,063,090 total letters Query= CG31020-PA melanogaster sanpodo (565 letters) Score E Sequences producing significant alignments: (bits) Value gnl|dpulex_jgi060905|scaffold_51 scaffold_51 name=Daphnia_pulex+... 33 4.4 MapView FastA GenBank EMBL GFF gnl|dpulex_jgi060905|scaffold_2 scaffold_2 name=Daphnia_pulex+sc... 32 6.4 MapView FastA GenBank EMBL GFF Show dpulex_jgi060905: scaffold_51 Hide dpulex_jgi060905: scaffold_51 MapView FastA GenBank EMBL GFF scaffold_51 name=Daphnia_pulex+scaffold_51+jgi060905; MD5=393ddea922eea70fc15c2c1b2f44081f; size=914909; Length = 914909 Score = 32.8 bits (99), Expect = 4.4 BLAST HIT on Genome Map Identities = 31/129 (24%), Positives = 48/129 (37%), Gaps = 4/129 (3%) Frame = +1 Query: 269 LSNMELSRQYAARTSTPQQKNAAAATRALHELLTTPRKMQPPPRLAHSTPRNAAHHEQLQ 328 L + ++R +++TP +K L T + PPRL +TPR + Sbjct: 78286 LHQVAITRPQQRKSTTPPRKLNTTRRLTLLPATTLRPRSTTPPRLPSTTPRLPTTQ---- 78453 Query: 329 LERRLEXXXXXXXXXXXXVGAVVGVPPTLPL----RQNRLSPQRLHYETVKPLPMQIADR 384 +RRL + PTLPL R ++P RL T L R Sbjct: 78454 -QRRLSTILQRLRSITPQRRSSTTQQPTLPLATTPRLRSITPPRLRSITPPRLRSITPPR 78630 Query: 385 SMAVISPRV 393 ++ PR+ Sbjct: 78631 LRSITPPRL 78657 >> hits predicted protein DP_DGIL_SNO_00017976 >DP_DGIL_SNO_00017976 MPLQLSLFNVAVDVILCRTRFDKIAVIYQDYYFHHNRKYKNVDYWCCSRR GCNVRLISVCVNHETGEMKFSRRSTNFQHQHLPNGPNLIGKEFRRQLLVQ LDNVVADSGEIQPTTPAAVYEELRRQVIKGGVPESLIPSFSSLCGNMDAK YLRLVDLPILLLAVLISRISLYTGVEAIEISRVRLFDTSTGALSLFAIYC AIKFHPVAMANFAITLLLAVVSMLAGSTTGGPMGSSSASSSYYQTTTTKE YYTTKKAEYYTTTYAAPSYYTEAPKYYTTKAPEYYTTASYYTTKAPEYYT TKAPEYYTTKKVEYYTTTYAAPSYYTEAPKYYTTEAPKYYTTEAPKYYTT EAPKYYTTEAPKYYTTEAPKYYTTTYAAPSYYTEAPKYYTTPAPYYTTTY VAPSYYTEAPKYYTTKAPEYYTEAPKYYSAPSYTTTAAPYTTTAAPYYTT DAAKYYVAPTYYTAAAPSYYDEPTYYTEAPQYYSAPSYYETEAPKYYTTA APSYYTEAPKYYAAPSYYQTKAPFYYTKAPEYYTTASYYTTKAPEYYTTT YAAPIYYTEAPKYYTTKAPEYYTEAPKYYSAPSYTTTAAPYYTTEAAKYY VAPTYYTAAAPSYYVEPTYYTEAPQYYAAPSYETEAPKYYAAPSYYTEAP KYYTTQAAEYYTTASYYTTKAPEYYTTKKAEYYTTPAPYYSTTTYATPSY YTEAPKYYTEAPKYYTDAPKYYTTKAPEYYTTASYYTTKAPEHYTTKKTE YYTEAPKYYSAPAY* >DP_DGIL_SNO_00017976 ATGCCACTACAATTGTCTCTGTTTAATGTCGCCGTCGACGTCATTCTCTGCCGCACCAGA TTCGATAAAATCGCCGTCATCTACCAAGATTATTATTTTCACCATAATCGCAAATATAAG AATGTCGACTATTGGTGTTGTTCTCGACGTGGATGTAACGTTCGTTTGATCAGCGTCTGT GTCAATCACGAAACGGGAGAGATGAAGTTTTCTCGTCGCAGTACAAATTTTCAACACCAA CATCTGCCAAACGGACCAAATTTGATCGGCAAAGAATTTCGTCGCCAGCTACTTGTTCAA TTGGACAATGTTGTAGCCGATTCGGGAGAAATTCAACCGACCACTCCTGCTGCCGTCTAT GAAGAACTCCGTCGGCAGGTTATCAAAGGTGGTGTCCCTGAATCGCTGATTCCTTCCTTC AGTTCTCTGTGCGGCAATATGGATGCCAAGTACCTACGTTTAGTCGATTTACCCATTTTG CTCTTGGCTGTTCTTATTAGCCGAATTTCCCTTTACACGGGAGTAGAGGCTATCGAAATC AGTCGAGTTCGCCTTTTCGACACGTCAACAGGAGCACTTAGTCTATTTGCCATTTACTGT GCCATCAAATTTCACCCTGTTGCCATGGCTAACTTTGCCATCACGTTGCTGCTAGCTGTC GTCTCGATGTTGGCTGGATCTACGACGGGTGGACCGATGGGCTCATCTTCTGCATCAAGT AGCTATTACCAGACCACAACAACGAAAGAGTACTACACCACCAAGAAAGCTGAATACTAC ACGACGACTTACGCTGCTCCCAGCTACTACACTGAGGCCCCGAAGTACTACACCACCAAG GCTCCCGAGTACTACACCACGGCTTCCTACTACACAACAAAGGCGCCTGAGTACTATACT ACAAAGGCTCCGGAGTATTACACCACAAAGAAGGTCGAGTACTACACAACAACCTACGCT GCCCCTAGCTACTACACCGAGGCTCCGAAGTATTACACCACCGAGGCTCCGAAGTATTAC ACCACCGAGGCTCCGAAGTATTACACCACCGAGGCTCCGAAGTATTACACCACCGAGGCT CCGAAGTATTACACCACCGAGGCTCCGAAGTATTACACCACGACGTATGCTGCTCCGAGT TATTACACCGAGGCTCCAAAGTACTACACAACACCGGCACCCTACTACACCACGACCTAC GTAGCTCCCAGCTACTACACCGAAGCTCCTAAGTACTACACCACCAAGGCACCTGAATAC TACACTGAGGCTCCAAAGTACTACTCGGCTCCAAGTTACACCACCACAGCGGCTCCTTAC ACCACCACAGCGGCTCCTTACTACACCACAGATGCTGCCAAGTATTACGTAGCCCCAACT TACTACACCGCTGCTGCCCCATCTTACTATGATGAACCAACTTACTACACCGAGGCTCCG CAATATTACTCAGCTCCTAGCTACTACGAGACCGAGGCACCCAAGTACTACACAACTGCT GCCCCAAGCTACTACACAGAAGCCCCTAAGTATTATGCTGCCCCGAGCTATTATCAGACT AAAGCGCCCTTTTATTATACTAAAGCTCCCGAGTACTACACCACTGCCTCCTACTACACC ACAAAGGCTCCGGAGTATTATACTACGACCTACGCAGCCCCTATCTACTACACCGAAGCT CCCAAGTACTACACCACCAAGGCACCTGAATACTACACCGAGGCTCCGAAATATTATTCA GCTCCAAGCTACACCACTACAGCTGCCCCTTACTACACCACTGAAGCTGCCAAGTATTAC GTAGCCCCAACTTACTACACCGCTGCTGCCCCATCTTACTATGTTGAGCCAACTTACTAC ACCGAAGCACCCCAGTACTACGCTGCTCCAAGCTACGAGACGGAAGCCCCAAAATACTAC GCTGCTCCCAGCTACTACACCGAGGCCCCAAAGTATTACACCACTCAAGCAGCCGAGTAC TATACAACTGCCTCCTACTACACCACTAAGGCGCCAGAATACTACACCACTAAAAAAGCT GAATACTACACTACTCCGGCACCTTACTACAGCACTACGACCTACGCTACTCCCAGCTAC TACACCGAGGCTCCCAAGTACTACACCGAGGCTCCCAAGTACTACACCGATGCTCCCAAG TACTACACCACCAAGGCTCCAGAATACTACACCACGGCTTCTTACTACACCACAAAGGCT CCTGAGCACTACACAACCAAGAAAACTGAGTACTACACTGAGGCTCCCAAATATTATTCC GCCCCAGCATACTAG