#species: dana facount by main,small scaffolds #nscaf len A C G T N cpg %GC %Ns %total 13 121044514 34269740 25462382 25452097 34287970 1572325 4672349 0.426 0.013 0.524 main_scaffolds 13736 109948498 27946608 19472787 19384065 27643168 15501870 4018836 0.411 0.141 0.476 small_scaffolds total 230993012 62216348 44935169 44836162 61931138 17074195 8691185 #---------------------------------------------------------------------- #species: dere facount by main,small scaffolds #nscaf len A C G T N cpg %GC %Ns %total 7 124479841 35134379 26829545 26841226 35118671 556020 5296919 0.433 0.004 0.815 main_scaffolds 5117 28232299 6764256 3825594 3824086 6746262 7072101 623108 0.362 0.250 0.185 small_scaffolds total 152712140 41898635 30655139 30665312 41864933 7628121 5920027 #---------------------------------------------------------------------- #species: dgri facount by main,small scaffolds #nscaf len A C G T N cpg %GC %Ns %total 11 128262589 38296908 24723831 24727084 38272240 2242526 4329239 0.392 0.017 0.640 main_scaffolds 17429 72205230 19441726 10638405 10581841 19408634 12134624 1868431 0.353 0.168 0.360 small_scaffolds total 200467819 57738634 35362236 35308925 57680874 14377150 6197670 #---------------------------------------------------------------------- #species: dmel facount by main,small scaffolds #nscaf len A C G T N cpg %GC %Ns %total 6 118357599 34052329 25132894 25120625 34042537 9214 4956552 0.425 0.000 0.911 main_scaffolds 1 11561901 1697534 1110556 1118709 1731688 5903414 212019 0.394 0.511 0.089 small_scaffolds total 129919500 35749863 26243450 26239334 35774225 5912628 5168571 #---------------------------------------------------------------------- #species: dmoj facount by main,small scaffolds #nscaf len A C G T N cpg %GC %Ns %total 9 149974488 44579631 29239060 29204109 44498205 2453483 5362787 0.396 0.016 0.774 main_scaffolds 6832 43851822 10066396 6347228 6353887 9919315 11164996 1232394 0.389 0.255 0.226 small_scaffolds total 193826310 54646027 35586288 35557996 54417520 13618479 6595181 #---------------------------------------------------------------------- #species: dper facount by main,small scaffolds #nscaf len A C G T N cpg %GC %Ns %total 25 102189919 27080120 22147219 22181810 27181805 3598965 4205170 0.450 0.035 0.542 main_scaffolds 12813 86184160 21279203 17305096 17277306 21130997 9191558 3528954 0.449 0.107 0.458 small_scaffolds total 188374079 48359323 39452315 39459116 48312802 12790523 7734124 #---------------------------------------------------------------------- #species: dpse facount by main,small scaffolds #nscaf len A C G T N cpg %GC %Ns %total 15 127291806 33552967 27887429 27904543 33616129 4330738 5312212 0.454 0.034 0.833 main_scaffolds 4881 25447115 6449878 5139153 5110866 6396204 2351014 1100801 0.444 0.092 0.167 small_scaffolds total 152738921 40002845 33026582 33015409 40012333 6681752 6413013 #---------------------------------------------------------------------- #species: dsec facount by main,small scaffolds #nscaf len A C G T N cpg %GC %Ns %total 20 97421651 27076725 20593846 20607763 27092673 2050644 4091934 0.432 0.021 0.585 main_scaffolds 14710 69155494 18389680 12474905 12507266 18495717 7287926 2518811 0.404 0.105 0.415 small_scaffolds total 166577145 45466405 33068751 33115029 45588390 9338570 6610745 #---------------------------------------------------------------------- #species: dsim facount by main,small scaffolds #nscaf len A C G T N cpg %GC %Ns %total 6 109695738 28863129 21770270 21772834 28877541 8411964 4318888 0.430 0.077 0.770 main_scaffolds 11 32710009 7722107 5264331 5248695 7719628 6755248 1023430 0.405 0.207 0.230 small_scaffolds total 142405747 36585236 27034601 27021529 36597169 15167212 5342318 #---------------------------------------------------------------------- #species: dvir facount by main,small scaffolds #nscaf len A C G T N cpg %GC %Ns %total 14 140240421 40551336 27847198 27833172 40642152 3366563 5417051 0.407 0.024 0.681 main_scaffolds 13516 65786276 16206151 10011376 9961278 16153200 13454271 1741725 0.382 0.205 0.319 small_scaffolds total 206026697 56757487 37858574 37794450 56795352 16820834 7158776 #---------------------------------------------------------------------- #species: dwil facount by main,small scaffolds #nscaf len A C G T N cpg %GC %Ns %total 23 144884685 45724297 26332448 26311247 45724699 791994 3914187 0.365 0.005 0.612 main_scaffolds 14904 91808437 24756733 15478161 15485954 24706409 11381180 2793640 0.385 0.124 0.388 small_scaffolds total 236693122 70481030 41810609 41797201 70431108 12173174 6707827 #---------------------------------------------------------------------- #species: dyak facount by main,small scaffolds #nscaf len A C G T N cpg %GC %Ns %total 11 121801812 34440609 25885001 25903484 34522374 1050344 5060695 0.429 0.009 0.722 main_scaffolds 9 46846046 12423291 8475946 8477746 12453423 5015640 1691965 0.405 0.107 0.278 small_scaffolds total 168647858 46863900 34360947 34381230 46975797 6065984 6752660 #---------------------------------------------------------------------- # Dmel primary gene matches on main, small scaffolds: dana dmelgene: main=12563; altscaf=519 dere dmelgene: main=13222; altscaf=109 dgri dmelgene: main=11667; altscaf=956 dmel dmelgene: main=13401; altscaf=0 dmoj dmelgene: main=12424; altscaf=264 dper dmelgene: main=9955; altscaf=2873 dpse dmelgene: main=12719; altscaf=165 dsec dmelgene: main=11506; altscaf=1859 dsim dmelgene: main=12115; altscaf=1184 dvir dmelgene: main=12109; altscaf=603 dwil dmelgene: main=11939; altscaf=854 dyak dmelgene: main=12985; altscaf=349 # Dmel dna match on main, small scaffolds dana dna-align: main=14627283; altscaf=3244967 dere dna-align: main=45549994; altscaf=3148880 dgri dna-align: main=6410111; altscaf=1169329 dmoj dna-align: main=7441223; altscaf=747199 dper dna-align: main=9771233; altscaf=3955964 dpse dna-align: main=12081282; altscaf=668957 dsec dna-align: main=41082874; altscaf=17781458 dsim dna-align: main=44822830; altscaf=6016134 dvir dna-align: main=7365978; altscaf=1494769 dwil dna-align: main=6979598; altscaf=1758918 dyak dna-align: main=45295152; altscaf=7926656