parsing sorted dmel-dyak2-dna.gff.gz to gff: stdout filters: skipsubseg=5916, joinoverlap=2240, minsizecut=11 Chr cover gaps n_inverts n_segs n_targets prob 2L 21783058 613383 10 178 41 5.06e-09 2R 20339876 382679 10 215 95 2.09e-09 3L 23501917 228126 7 381 250 2.89e-11 3R 27686077 212610 16 353 159 8.50e-12 4 1239824 33633 6 36 22 2.78e-10 X 21894601 314440 18 254 86 1.57e-06 Total 116445353 1784871 67 1417 653 2.83e-07 =========================================================================== chr x targets over 1% of 116445353 cover, from n= 17 targets dyak_wu051101:chr3R 26006308 22.3% 3R 99.7% dyak_wu051101:chrX 21349236 18.3% X 99.8% dyak_wu051101:chr2L 20923434 18.0% 2L 77.4% 2R 22.2% dyak_wu051101:chr3L 20566292 17.7% 3L 99.9% dyak_wu051101:chr2R 19898201 17.1% 2R 73.0% 2L 26.8% dyak_wu051101:chr3L_random 2200735 1.9% 3L 97.3% 2L 1.2% dyak_wu051101:chr3R_random 1600312 1.4% 3R 100.0% dyak_wu051101:chrU 1560291 1.3% 2R 39.6% 3L 24.2% ---------------------------------------------------------------------------