parsing sorted dmel-dwil1-dna.gff to gff: dmel-dwil1-algn.gff filters: skipsubseg=16702, joinoverlap=2068, minsizecut=1576 Chr cover gaps n_inverts n_segs n_targets prob 2L 19819155 2569227 74 506 256 2.82e-06 2R 17659976 3073115 55 514 305 1.65e-07 3L 21201454 2508231 81 559 270 1.55e-07 3R 25554349 2343817 79 627 269 2.73e-07 4 893566 360462 7 48 22 4.17e-06 X 18366318 3844452 101 717 348 3.47e-07 Total 103494818 14699304 397 2971 1470 7.47e-07 =========================================================================== chr x targets over 1% of 103494818 cover, from n=193 targets dwil_caf060213:scaffold_181130 11901093 11.5% 3R 92.9% 4 6.8% dwil_caf060213:scaffold_181089 10391060 10.0% 3R 99.4% dwil_caf060213:scaffold_180698 8388581 8.1% 3L 100.0% dwil_caf060213:scaffold_181096 7490875 7.2% X 98.4% 3L 1.1% dwil_caf060213:scaffold_180708 7411009 7.2% 2L 98.7% dwil_caf060213:scaffold_180772 5127519 5.0% 2L 100.0% dwil_caf060213:scaffold_180949 4091007 4.0% 3L 99.5% dwil_caf060213:scaffold_180700 4068486 3.9% 2R 99.9% dwil_caf060213:scaffold_181108 4057090 3.9% 3R 100.0% dwil_caf060213:scaffold_180702 3565087 3.4% X 100.0% dwil_caf060213:scaffold_180777 3418524 3.3% X 100.0% dwil_caf060213:scaffold_181150 2656886 2.6% X 99.3% dwil_caf060213:scaffold_180703 2646137 2.6% 2L 99.8% dwil_caf060213:scaffold_180764 2585259 2.5% 2L 100.0% dwil_caf060213:scaffold_180697 2535970 2.5% 2R 100.0% dwil_caf060213:scaffold_181009 2486137 2.4% 2R 76.4% 3L 23.6% dwil_caf060213:scaffold_180701 2389139 2.3% 2R 100.0% dwil_caf060213:scaffold_180955 2171053 2.1% 3L 100.0% dwil_caf060213:scaffold_181141 2093265 2.0% 2R 99.6% dwil_caf060213:scaffold_180727 1871891 1.8% 3L 100.0% dwil_caf060213:scaffold_180699 1794760 1.7% 2R 99.9% dwil_caf060213:scaffold_180916 1686437 1.6% 3L 100.0% dwil_caf060213:scaffold_180745 1503233 1.5% 2R 100.0% ---------------------------------------------------------------------------