parsing sorted dmel-dvir3-dna.gff to gff: dmel-dvir3-algn.gff filters: skipsubseg=8382, joinoverlap=2033, minsizecut=1144 Chr cover gaps n_inverts n_segs n_targets prob 2L 19754335 2609761 87 447 137 4.53e-08 2R 18042526 2694091 97 472 139 7.64e-07 3L 21629425 2134043 119 471 87 1.56e-06 3R 25420575 2477508 94 548 201 2.45e-08 4 777894 487952 8 37 18 3.00e-06 X 18640144 3570847 110 664 270 2.06e-09 Total 104264899 13974202 515 2639 852 4.71e-07 =========================================================================== chr x targets over 1% of 104264899 cover, from n=127 targets dvir_caf051209:scaffold_13049 20157868 19.3% 3L 99.8% dvir_caf051209:scaffold_13047 14825176 14.2% 3R 99.7% dvir_caf051209:scaffold_12875 14675156 14.1% 2R 99.8% dvir_caf051209:scaffold_12963 14106738 13.5% 2L 99.6% dvir_caf051209:scaffold_12970 7568494 7.3% X 99.6% dvir_caf051209:scaffold_12855 7522497 7.2% 3R 100.0% dvir_caf051209:scaffold_12928 4469556 4.3% X 100.0% dvir_caf051209:scaffold_12723 3746568 3.6% 2L 99.7% dvir_caf051209:scaffold_12822 2969697 2.8% 3R 100.0% dvir_caf051209:scaffold_13042 2650730 2.5% X 100.0% dvir_caf051209:scaffold_12726 1964062 1.9% X 98.3% 3L 1.7% dvir_caf051209:scaffold_13246 1714815 1.6% 2L 100.0% dvir_caf051209:scaffold_12823 1699027 1.6% 2R 100.0% dvir_caf051209:scaffold_12932 1273479 1.2% X 100.0% ---------------------------------------------------------------------------