parsing sorted dmel-dsim2-dna.gff to gff: dmel-dsim2-algn.gff filters: skipsubseg=14015, joinoverlap=3966, minsizecut=40 Chr cover gaps n_inverts n_segs n_targets prob 2L 22063272 331277 6 413 103 9.69e-26 2R 20559673 192502 11 487 202 1.23e-09 3L 23452778 301981 11 472 145 3.18e-09 3R 27709669 195552 3 483 95 4.22e-52 4 1237498 41985 2 43 34 6.98e-10 X 21590418 632686 18 698 401 1.46e-10 Total 116613308 1695983 51 2596 980 8.61e-10 =========================================================================== chr x targets over 1% of 116613308 cover, from n= 17 targets dsim_wu050602:chr3R 27222763 23.3% 3R 99.8% dsim_wu050602:chr3L 22212928 19.0% 3L 99.8% dsim_wu050602:chr2L 21338278 18.3% 2L 99.9% dsim_wu050602:chr2R 18694467 16.0% 2R 98.2% 3L 1.8% dsim_wu050602:chrX 17175442 14.7% X 99.5% dsim_wu050602:chrX_random 3885192 3.3% X 99.8% dsim_wu050602:chrU 1618603 1.4% 2R 29.0% X 24.1% dsim_wu050602:chr2R_random 1222969 1.0% 2R 98.7% ---------------------------------------------------------------------------