parsing sorted /bio/archive/eugenes/genomes/dsec1/dmel-dsec-dna.gff.gz to gff: dmel-dsec1-algn.gff filters: skipsubseg=25870, joinoverlap=1977, minsizecut=46 Chr cover gaps n_inverts n_segs n_targets prob 2L 21411657 986873 2 361 182 8.31e-10 2R 19996854 764010 4 398 233 1.11e-11 3L 22896244 870087 5 355 188 5.64e-10 3R 26686482 1218719 8 392 168 2.55e-10 4 1252966 28517 1 83 74 4.82e-08 X 21293671 929186 13 452 260 2.88e-08 Total 113537874 4797392 33 2041 1105 8.63e-09 =========================================================================== chr x targets over 1% of 113537874 cover, from n=704 targets dsec_br0510:scaffold_0 20924877 18.4% 3R 53.0% 3L 47.0% dsec_br0510:scaffold_1 13632915 12.0% 2R 100.0% dsec_br0510:scaffold_2 7365845 6.5% 3L 100.0% dsec_br0510:scaffold_3 7091294 6.2% 2L 100.0% dsec_br0510:scaffold_4 6053796 5.3% X 54.1% 3R 45.8% dsec_br0510:scaffold_5 5387123 4.7% 2L 85.9% 3R 9.5% dsec_br0510:scaffold_6 3967509 3.5% 3R 99.6% dsec_br0510:scaffold_8 3565902 3.1% X 99.0% dsec_br0510:scaffold_7 3507381 3.1% 2L 100.0% dsec_br0510:scaffold_9 3095495 2.7% 2R 99.6% dsec_br0510:scaffold_10 3042853 2.7% X 100.0% dsec_br0510:scaffold_11 2681144 2.4% 3L 99.3% dsec_br0510:scaffold_14 2055043 1.8% 2L 99.7% dsec_br0510:scaffold_12 1963707 1.7% 3R 100.0% dsec_br0510:scaffold_13 1936360 1.7% 3R 100.0% dsec_br0510:scaffold_16 1881261 1.7% 2L 99.2% dsec_br0510:scaffold_15 1876006 1.7% X 100.0% dsec_br0510:scaffold_17 1410172 1.2% X 100.0% dsec_br0510:scaffold_19 1278470 1.1% 3L 100.0% ---------------------------------------------------------------------------