parsing sorted dmel-dpse2-dna.gff to gff: stdout filters: skipsubseg=2641, joinoverlap=2098, minsizecut=123 Chr cover gaps n_inverts n_segs n_targets prob 2L 20891248 1488594 48 385 138 2.79e-08 2R 19142216 1600552 104 384 43 5.31e-10 3L 22230819 1481879 55 403 124 1.89e-09 3R 26811728 1081031 125 500 63 2.01e-08 4 995900 269991 8 31 11 9.69e-14 X 20459871 1745595 78 497 205 1.83e-09 Total 110531782 7667642 418 2200 584 1.03e-08 =========================================================================== chr x targets over 1% of 110531782 cover, from n= 22 targets dpse_r201:2 26440716 23.9% 3R 100.0% dpse_r201:3 18573949 16.8% 2R 100.0% dpse_r201:XR_group6 12023065 10.9% 3L 100.0% dpse_r201:XL_group1e 10360267 9.4% X 100.0% dpse_r201:4_group3 9558119 8.6% 2L 100.0% dpse_r201:XR_group8 8019288 7.3% 3L 100.0% dpse_r201:XL_group1a 6912084 6.3% X 99.9% dpse_r201:4_group4 4875786 4.4% 2L 99.4% dpse_r201:4_group1 3748617 3.4% 2L 98.8% 3L 1.2% dpse_r201:XL_group3a 2163093 2.0% X 99.3% dpse_r201:U 1675439 1.5% X 30.8% 2R 24.8% dpse_r201:4_group5 1647222 1.5% 2L 100.0% dpse_r201:XR_group3a 1232444 1.1% 3L 100.0% ---------------------------------------------------------------------------