parsing sorted /bio/archive/eugenes/genomes/dper1/dmel-dper-dna.gff.gz to gff: dmel-dper1-algn.gff filters: skipsubseg=27428, joinoverlap=3811, minsizecut=757 Chr cover gaps n_inverts n_segs n_targets prob 2L 20997853 1382141 61 537 140 7.29e-08 2R 19030590 1710777 41 606 248 3.40e-07 3L 21783429 1932488 27 777 425 9.73e-07 3R 26855995 1038819 73 676 141 1.46e-08 4 1102648 171702 14 42 19 1.00e-12 X 20149260 2061602 60 748 374 5.76e-08 Total 109919775 8297529 276 3386 1347 3.11e-07 =========================================================================== chr x targets over 1% of 109919775 cover, from n=542 targets dper_br051028:scaffold_0 10546038 9.6% 3R 100.0% dper_br051028:scaffold_2 8088520 7.4% 2R 100.0% dper_br051028:scaffold_1 7909431 7.2% 2L 99.5% dper_br051028:scaffold_4 6875218 6.3% 2R 100.0% dper_br051028:scaffold_3 5682112 5.2% 3R 98.1% 3L 1.9% dper_br051028:scaffold_6 5007713 4.6% 3R 100.0% dper_br051028:scaffold_5 4982522 4.5% 2L 100.0% dper_br051028:scaffold_7 3977208 3.6% 3R 99.6% dper_br051028:scaffold_9 3205734 2.9% 3L 100.0% dper_br051028:scaffold_8 3157799 2.9% 2L 100.0% dper_br051028:scaffold_10 2440257 2.2% 2L 99.9% dper_br051028:scaffold_12 2248344 2.0% 3L 76.4% X 23.6% dper_br051028:scaffold_13 1981579 1.8% X 100.0% dper_br051028:scaffold_11 1969019 1.8% X 99.5% dper_br051028:scaffold_15 1941422 1.8% X 100.0% dper_br051028:scaffold_14 1778054 1.6% X 100.0% dper_br051028:scaffold_19 1610086 1.5% 3R 100.0% dper_br051028:scaffold_20 1568239 1.4% 3L 100.0% dper_br051028:scaffold_17 1523148 1.4% X 100.0% dper_br051028:scaffold_18 1501884 1.4% X 100.0% dper_br051028:scaffold_23 1362058 1.2% 3L 100.0% dper_br051028:scaffold_21 1349260 1.2% X 100.0% dper_br051028:scaffold_24 1347883 1.2% 3L 100.0% dper_br051028:scaffold_22 1293524 1.2% X 100.0% dper_br051028:scaffold_16 1226341 1.1% 2L 97.3% 2R 2.7% ---------------------------------------------------------------------------