parsing sorted dmel-dmoj3-dna.gff to gff: dmel-dmoj3-algn.gff filters: skipsubseg=8685, joinoverlap=2060, minsizecut=668 Chr cover gaps n_inverts n_segs n_targets prob 2L 19739773 2636917 128 469 57 1.56e-06 2R 17638326 3016999 132 529 83 2.16e-06 3L 21010445 2727461 113 489 109 4.48e-07 3R 25490923 2407209 195 627 61 9.26e-08 4 811591 455452 12 43 18 2.34e-07 X 18160227 4041336 111 713 322 1.53e-07 Total 102851285 15285374 691 2870 650 7.91e-07 =========================================================================== chr x targets over 1% of 102851285 cover, from n=144 targets dmoj_caf051209:scaffold_6540 25454779 24.7% 3R 99.5% dmoj_caf051209:scaffold_6500 19686161 19.1% 2L 99.4% dmoj_caf051209:scaffold_6680 18939764 18.4% 3L 99.8% dmoj_caf051209:scaffold_6496 17363003 16.9% 2R 99.8% dmoj_caf051209:scaffold_6473 9940368 9.7% X 99.5% dmoj_caf051209:scaffold_6359 2705252 2.6% X 100.0% dmoj_caf051209:scaffold_6328 2628072 2.6% X 100.0% dmoj_caf051209:scaffold_6308 1880141 1.8% X 100.0% dmoj_caf051209:scaffold_6654 1841386 1.8% 3L 99.7% ---------------------------------------------------------------------------