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DrosMel Affy Tilex genes: Other Protein matches

2L	608418	609206	0.67	-	.	ID=DGIL_AUG30_p1.2L.g321.t1; est=AI405247,AW940966; prot=AAL28329/7227/GH25188p [Drosophila melanogaster]
2L	668738	669086	0.1	-	.	ID=DGIL_AUG30_p1.2L.g363.t1; est=AA801623; prot=AAL28387/7227/GM02002p [Drosophila melanogaster]
2L	895143	895857	0.34	+	.	ID=DGIL_AUG30_p1.2L.g505.t1; prot=CAA82675/7227/unknown [Drosophila melanogaster]
2L	933167	933973	0.36	+	.	ID=DGIL_AUG30_p1.2L.g525.t1; prot=AAO39447/7227/RH63623p [Drosophila melanogaster]
2L	11778427	11779405	0.37	-	.	ID=DGIL_AUG30_p2.2L.g37.t1; est=AI531861; prot=AAL90435/7227/SD03144p [Drosophila melanogaster]
2L	12543176	12544068	0.97	+	.	ID=DGIL_AUG30_p2.2L.g395.t1; est=AA696444,AW941293; prot=AAM11106/7227/GM07702p [Drosophila melanogaster]
2L	12608051	12610467	0.09	+	.	ID=DGIL_AUG30_p2.2L.g423.t1; prot=XP_001356559/7237/GA13766-PA [Drosophila pseudoobscura]
2L	13494204	13495768	0.07	+	.	ID=DGIL_AUG30_p2.2L.g845.t1; est=AA567895,AA567887; prot=AAL28552/7227/HL01958p [Drosophila melanogaster]
2L	14138443	14139037	1	+	.	ID=DGIL_AUG30_p3.2L.g268.t1; est=BI582137,BI582486,BI582507,BI609827,BI611080,BI613788,BI616255; prot=AAN71579/7227/RH43029p [Drosophila melanogaster]
2L	14513245	14514113	0.72	+	.	ID=DGIL_AUG30_p3.2L.g439.t1; prot=NP_001104181/7227/CG40955 CG40955-PA [Drosophila melanogaster]
2L	14670845	14671503	0.02	-	.	ID=DGIL_AUG30_p3.2L.g544.t1; prot=XP_001619775/45351/hypothetical protein NEMVEDRAFT_v1g5655 [Nematostella vectensis]
2L	14787442	14788138	0.07	-	.	ID=DGIL_AUG30_p3.2L.g609.t1; prot=XP_001746082/431895/predicted protein [Monosiga brevicollis MX1]
2L	15134606	15135140	0.22	+	.	ID=DGIL_AUG30_p3.2L.g752.t1; prot=NP_650479/7227/CG5302 CG5302-PA [Drosophila melanogaster]
2L	17704657	17706780	0.01	+	.	ID=DGIL_AUG30_p5.2L.g95.t1; est=EL884825,EL884825,EL884825; prot=ABE73222/7227/IP16055p [Drosophila melanogaster]
2L	17786578	17787026	0.2	-	.	ID=DGIL_AUG30_p5.2L.g110.t1; prot=Q9VJB6/7227/Putative neural-cadherin 2 precursor (Cadherin-N2 protein) (DN2-cadherin)
2L	18992505	18993719	0.13	+	.	ID=DGIL_AUG30_p5.2L.g692.t1; prot=NP_609928/7227/CG15169 CG15169-PA [Drosophila melanogaster]
2L	19129551	19129995	0.23	+	.	ID=DGIL_AUG30_p5.2L.g776.t1; prot=NP_001036405/7227/CG41121 CG41121-PA, isoform A [Drosophila melanogaster]
2L	19741137	19741985	0.15	-	.	ID=DGIL_AUG30_p6.2L.g133.t1; prot=NP_609998/7227/CG10631 CG10631-PA [Drosophila melanogaster]
2L	19742037	19742655	0.17	-	.	ID=DGIL_AUG30_p6.2L.g134.t1; prot=XP_001355744/7237/GA10453-PA [Drosophila pseudoobscura]
2L	20195594	20198095	0.02	-	.	ID=DGIL_AUG30_p6.2L.g371.t1; est=BP547747,BP548431,BP553571,BP548770; prot=ABI96221/7220/unknown [Drosophila erecta]
2L	20986167	20986540	0.29	+	.	ID=DGIL_AUG30_p6.2L.g739.t1; prot=ZP_00531443/331678/hypothetical protein Cphamn1DRAFT_2669 [Chlorobium phaeobacteroides BS1]
2L	21399830	21400273	0.56	+	.	ID=DGIL_AUG30_p6.2L.g912.t1; prot=NP_995746/7227/CG33347 CG33347-PA [Drosophila melanogaster]
2L	2779409	2780168	0.26	+	.	ID=DGIL_AUG30_p7.2L.g509.t1; est=EC077679,EC079348,EC203337,EC242244,CO301404,CO308398,CO314627,CO333071; prot=XP_001719783/9606/PREDICTED: similar to KLHL23 protein, partial [Homo sapiens]
2L	3948364	3949677	0.16	+	.	ID=DGIL_AUG30_p7.2L.g1066.t1; prot=XP_001072050/10116/PREDICTED: similar to H3 histone, family 2 isoform 2 [Rattus norvegicus]
2L	21556836	21557285	0.49	+	.	ID=DGIL_AUG30_p8.2L.g23.t1; prot=NP_001104116/7227/CG40624 CG40624-PA [Drosophila melanogaster]
2L	21577167	21577575	0.07	-	.	ID=DGIL_AUG30_p8.2L.g26.t1; prot=ABG02143/7227/IP03331p [Drosophila melanogaster]
2L	21606446	21607650	0.63	+	.	ID=DGIL_AUG30_p8.2L.g34.t1; prot=ZP_00373731/307502/gag protein [Wolbachia endosymbiont of Drosophila ananassae]
2L	21837023	21837421	0.23	-	.	ID=DGIL_AUG30_p8.2L.g100.t1; prot=XP_001361871/7237/GA21045-PA [Drosophila pseudoobscura]
2L	22197010	22197774	0.19	+	.	ID=DGIL_AUG30_p8.2L.g287.t1; prot=NP_611214/7227/CG14478 CG14478-PB, isoform B [Drosophila melanogaster]
2L	22243661	22244909	0.38	-	.	ID=DGIL_AUG30_p8.2L.g310.t1; est=EC223425,EC235234,EC248867,AI292597,CO315252,CO321667; prot=CAA65152/7227/orf [Drosophila melanogaster]
2L	22447561	22451438	0.01	+	.	ID=DGIL_AUG30_p8.2L.g369.t1; prot=AAK77263/7227/GH03753p [Drosophila melanogaster]
2L	22455062	22455810	0.07	-	.	ID=DGIL_AUG30_p8.2L.g370.t1; prot=NP_001015217/7227/CG41057 CG41057-PA [Drosophila melanogaster]
2L	22468393	22470150	0.03	-	.	ID=DGIL_AUG30_p8.2L.g378.t1; prot=NP_001104083/7227/CG41559 CG41559-PA [Drosophila melanogaster]
2L	22497790	22510334	0.03	+	.	ID=DGIL_AUG30_p8.2L.g391.t1; est=EC253969; prot=CAB99191/7227/gag-like protein [Drosophila melanogaster]
2L	22542430	22552373	0.01	+	.	ID=DGIL_AUG30_p8.2L.g402.t1; est=BI605333,BI610340,BI613567,BI626394,AI258388; prot=AAK52055/7227/RNA-directed DNA polymerase [Drosophila melanogaster]
2L	22552900	22555079	0.02	-	.	ID=DGIL_AUG30_p8.2L.g403.t1; prot=AAL49362/7227/RH47344p [Drosophila melanogaster]
2L	22562511	22563759	0.22	-	.	ID=DGIL_AUG30_p8.2L.g406.t1; est=EC068605; prot=CAA47913/7227/ORF [Drosophila melanogaster]
2L	22572540	22577667	0.12	+	.	ID=DGIL_AUG30_p8.2L.g411.t1; est=EL880157,BI610206,BI610339,BI611696,BI620237; prot=AAA28508/7227/reverse transcriptase (put.);  putative
2L	22592560	22599073	0.18	+	.	ID=DGIL_AUG30_p8.2L.g414.t1; prot=CAB39733/7264/protease, reverse transcriptase, ribonuclease H, integrase [Drosophila buzzatii]
2L	22601521	22604729	0.02	-	.	ID=DGIL_AUG30_p8.2L.g416.t1; prot=XP_001599975/7425/PREDICTED: similar to Lian-Aa1 retrotransposon protein [Nasonia vitripennis]
2L	22618850	22619404	0.14	+	.	ID=DGIL_AUG30_p8.2L.g422.t1; prot=XP_001201290/7668/PREDICTED: similar to retrotransposon protein, putative, Ty3-gypsy subclass [Strongylocentrotus purpuratus]
2L	22629724	22631329	0.11	-	.	ID=DGIL_AUG30_p8.2L.g426.t1; prot=XP_001201290/7668/PREDICTED: similar to retrotransposon protein, putative, Ty3-gypsy subclass [Strongylocentrotus purpuratus]
2L	22632440	22636025	0.02	+	.	ID=DGIL_AUG30_p8.2L.g428.t1; est=EL871737; prot=CAJ14165/7165/BEL12_AG transposon polyprotein [Anopheles gambiae]
2L	22642480	22643019	0.13	+	.	ID=DGIL_AUG30_p8.2L.g433.t1; prot=AAK68401/6239/Hypothetical protein W07E6.6 [Caenorhabditis elegans]
2L	22658524	22662046	0.28	+	.	ID=DGIL_AUG30_p8.2L.g442.t1; est=EC081769,EC088995,EC201913,EC214042,EC214617,EC234828,EL882747,EL883033,BI569329,CK135318,AI532946,CO283715,CO283734,CO285143,CO304388; prot=CAD32253/7227/gag-pol polyprotein precursor;  hypothetical protein [Drosophila melanogaster]
2L	22672574	22673275	0.13	+	.	ID=DGIL_AUG30_p8.2L.g443.t1; prot=ZP_00373731/307502/gag protein [Wolbachia endosymbiont of Drosophila ananassae]
2L	22674834	22678910	0.03	+	.	ID=DGIL_AUG30_p8.2L.g444.t1; prot=CAA32198/7227/polyprotein [Drosophila melanogaster]
2L	22679694	22680846	0.02	+	.	ID=DGIL_AUG30_p8.2L.g446.t1; prot=NP_001104113/7227/CG40505 CG40505-PA [Drosophila melanogaster]
2L	22683402	22684783	0.01	-	.	ID=DGIL_AUG30_p8.2L.g448.t1; prot=NP_001036405/7227/CG41121 CG41121-PA, isoform A [Drosophila melanogaster]
2L	22692984	22698138	0.03	+	.	ID=DGIL_AUG30_p8.2L.g451.t1; prot=CAA32198/7227/polyprotein [Drosophila melanogaster]
2L	22698155	22702393	0.04	-	.	ID=DGIL_AUG30_p8.2L.g452.t1; prot=AAK52057/7227/gag protein [Drosophila melanogaster]
2L	22713834	22717418	0.01	+	.	ID=DGIL_AUG30_p8.2L.g458.t1; est=CK604839; prot=BAD01589/7240/hypothetical protein [Drosophila simulans]
2L	22722382	22722993	0.17	-	.	ID=DGIL_AUG30_p8.2L.g461.t1; est=CK135708; prot=P21329/7221/RNA-directed DNA polymerase from mobile element jockey (Reverse transcriptase)
2L	22725495	22733523	0.03	-	.	ID=DGIL_AUG30_p8.2L.g463.t1; prot=AAK77263/7227/GH03753p [Drosophila melanogaster]
2L	22748444	22748958	0.24	+	.	ID=DGIL_AUG30_p8.2L.g466.t1; prot=P21329/7221/RNA-directed DNA polymerase from mobile element jockey (Reverse transcriptase)
2L	22748995	22751743	0.01	-	.	ID=DGIL_AUG30_p8.2L.g467.t1; prot=ZP_00374090/307502/SD27140p [Wolbachia endosymbiont of Drosophila ananassae]
2L	22752725	22753063	0.44	-	.	ID=DGIL_AUG30_p8.2L.g469.t1; prot=XP_001601898/7425/PREDICTED: similar to BEL12_AG transposon polyprotein [Nasonia vitripennis]
2L	22753685	22755473	0.01	-	.	ID=DGIL_AUG30_p8.2L.g470.t1; est=BI612554; prot=AAB66824/7244/Tel1 [Drosophila virilis]
2L	22760714	22761898	0.1	+	.	ID=DGIL_AUG30_p8.2L.g472.t1; prot=BAA57030/7240/unnamed protein product [Drosophila simulans]
2L	22761909	22763413	0.03	-	.	ID=DGIL_AUG30_p8.2L.g473.t1; prot=XP_001843837/7176/conserved hypothetical protein [Culex pipiens quinquefasciatus]
2L	22763584	22764514	0.05	+	.	ID=DGIL_AUG30_p8.2L.g474.t1; prot=BAA19772/7240/unnamed protein product [Drosophila simulans]
2L	22765804	22768103	0.04	-	.	ID=DGIL_AUG30_p8.2L.g475.t1; prot=NP_001036413/7227/CG41484 CG41484-PA [Drosophila melanogaster]
2L	22773914	22774468	0.33	+	.	ID=DGIL_AUG30_p8.2L.g478.t1; prot=P21329/7221/RNA-directed DNA polymerase from mobile element jockey (Reverse transcriptase)
2L	22782714	22786531	0.02	+	.	ID=DGIL_AUG30_p8.2L.g480.t1; est=EC220166,CA803262,CO269686; prot=NP_001104163/7227/CG40856 CG40856-PA [Drosophila melanogaster]
2L	22787234	22790978	0.02	+	.	ID=DGIL_AUG30_p8.2L.g481.t1; est=BI640060; prot=CAD32253/7227/gag-pol polyprotein precursor;  hypothetical protein [Drosophila melanogaster]
2L	22852159	22856087	0.02	-	.	ID=DGIL_AUG30_p8.2L.g494.t1; prot=XP_001599975/7425/PREDICTED: similar to Lian-Aa1 retrotransposon protein [Nasonia vitripennis]
2L	22933293	22937727	0.02	-	.	ID=DGIL_AUG30_p8.2L.g508.t1; prot=AAK77263/7227/GH03753p [Drosophila melanogaster]
2L	22939858	22940952	0.03	+	.	ID=DGIL_AUG30_p8.2L.g509.t1; prot=P04282/7227/Retrovirus-related Gag polyprotein from copia-like transposable element 17.6
2L	22944708	22948662	0.03	+	.	ID=DGIL_AUG30_p8.2L.g512.t1; est=BI626889; prot=AAB66824/7244/Tel1 [Drosophila virilis]
2L	22961958	22962942	0.07	+	.	ID=DGIL_AUG30_p8.2L.g518.t1; est=AI296043; prot=AAM50939/7227/LP09838p [Drosophila melanogaster]
2L	22965848	22966332	0.04	+	.	ID=DGIL_AUG30_p8.2L.g522.t1; prot=AAA28508/7227/reverse transcriptase (put.);  putative
2L	22966388	22967022	0.55	+	.	ID=DGIL_AUG30_p8.2L.g523.t1; prot=ZP_00373429/307502/Pol protein [Wolbachia endosymbiont of Drosophila ananassae]
2L	22978738	22979392	0.82	+	.	ID=DGIL_AUG30_p8.2L.g529.t1; prot=AAN87269/7227/ORF [Drosophila melanogaster]
2L	4000106	4001444	0.04	+	.	ID=DGIL_AUG30_p9.2L.g53.t1; prot=NP_652638/7227/lectin-22C CG15378-PA [Drosophila melanogaster]
2L	4114951	4115814	0.17	-	.	ID=DGIL_AUG30_p9.2L.g125.t1; est=EC056752,EC057475,EC063451,EC065445,EC067357,EC070830,EC071047,EC071117,EC079285,EC081218,EC081625,EC197961,EC200678,EC202664,EC208458,more; prot=XP_001508565/9258/PREDICTED: similar to SJCHGC01974 protein [Ornithorhynchus anatinus]
2L	4411346	4411790	0.45	+	.	ID=DGIL_AUG30_p9.2L.g267.t1; prot=NP_477200/7227/Galactose-specific C-type lectin CG9976-PA [Drosophila melanogaster]
2L	7029027	7030019	0.18	+	.	ID=DGIL_AUG30_p10.2L.g532.t1; prot=XP_001335606/7955/PREDICTED: similar to Gypsy Danio rerio 1 polyprotein
2L	7399377	7400120	0.1	+	.	ID=DGIL_AUG30_p10.2L.g731.t1; prot=NP_609116/7227/CG15818 CG15818-PA [Drosophila melanogaster]
2L	7839790	7840251	0.17	-	.	ID=DGIL_AUG30_p10.2L.g926.t1; prot=ABB77169/29030/R2D2 [Drosophila takahashii]
2L	7934755	7935265	0.33	-	.	ID=DGIL_AUG30_p11.2L.g82.t1; prot=AAL49390/7227/SD06617p [Drosophila melanogaster]
2L	9251137	9251474	0.9	-	.	ID=DGIL_AUG30_p11.2L.g695.t1; prot=NP_609278/7227/australin CG17009-PA [Drosophila melanogaster]
2L	11534298	11534996	0.14	-	.	ID=DGIL_AUG30_p12.2L.g1010.t1; prot=ABN49276/7227/IP17003p [Drosophila melanogaster]
2R	9752	17725	0.01	-	.	ID=DGIL_AUG30_p1.2R.g1.t1; prot=AAK52055/7227/RNA-directed DNA polymerase [Drosophila melanogaster]
2R	27006	29214	0.01	+	.	ID=DGIL_AUG30_p1.2R.g8.t1; prot=NP_001104116/7227/CG40624 CG40624-PA [Drosophila melanogaster]
2R	67257	73345	0.01	-	.	ID=DGIL_AUG30_p1.2R.g18.t1; prot=AAK52055/7227/RNA-directed DNA polymerase [Drosophila melanogaster]
2R	94567	95585	0.08	-	.	ID=DGIL_AUG30_p1.2R.g27.t1; prot=AAC28744/7213/env-like protein [Ceratitis capitata]
2R	97116	100065	0.01	-	.	ID=DGIL_AUG30_p1.2R.g28.t1; prot=AAK01366/7227/pol polyprotein [Drosophila melanogaster]
2R	101828	103075	0.02	-	.	ID=DGIL_AUG30_p1.2R.g29.t1; prot=CAA65152/7227/orf [Drosophila melanogaster]
2R	103206	107049	0.06	+	.	ID=DGIL_AUG30_p1.2R.g30.t1; est=EC249228,AA567776,CO305413; prot=BAD01589/7240/hypothetical protein [Drosophila simulans]
2R	135555	138785	0.14	-	.	ID=DGIL_AUG30_p1.2R.g37.t1; est=BI582912,BI587555,BI589348; prot=AAL49291/7227/RH02410p [Drosophila melanogaster]
2R	165216	166410	0.03	+	.	ID=DGIL_AUG30_p1.2R.g45.t1; prot=NP_001104160/7227/CG40924 CG40924-PA [Drosophila melanogaster]
2R	166846	167220	0.27	+	.	ID=DGIL_AUG30_p1.2R.g46.t1; prot=ABD72267/7264/pol polyprotein [Drosophila buzzatii]
2R	167666	168050	0.41	+	.	ID=DGIL_AUG30_p1.2R.g47.t1; prot=ABD72267/7264/pol polyprotein [Drosophila buzzatii]
2R	175350	175724	0.21	+	.	ID=DGIL_AUG30_p1.2R.g49.t1; prot=XP_001357101/7237/GA16356-PA [Drosophila pseudoobscura]
2R	176600	181583	0.06	+	.	ID=DGIL_AUG30_p1.2R.g51.t1; est=EC224290,EC251792,CO281744,CO283157,CO293648,CO326030,CO340357; prot=AAN34650/7227/gag protein [Drosophila melanogaster]
2R	185601	187449	0.13	-	.	ID=DGIL_AUG30_p1.2R.g56.t1; prot=CAB39733/7264/protease, reverse transcriptase, ribonuclease H, integrase [Drosophila buzzatii]
2R	192730	197274	0.02	+	.	ID=DGIL_AUG30_p1.2R.g57.t1; est=EC238703; prot=AAL29119/7227/SD01935p [Drosophila melanogaster]
2R	197330	198900	0.07	+	.	ID=DGIL_AUG30_p1.2R.g58.t1; prot=AAN34648/7227/truncated pol protein [Drosophila melanogaster]
2R	205919	207489	0.09	-	.	ID=DGIL_AUG30_p1.2R.g60.t1; prot=AAM11673/7227/gag protein [Drosophila melanogaster]
2R	250340	250654	0.44	+	.	ID=DGIL_AUG30_p1.2R.g68.t1; prot=ZP_00374090/307502/SD27140p [Wolbachia endosymbiont of Drosophila ananassae]
2R	254002	259039	0.01	-	.	ID=DGIL_AUG30_p1.2R.g70.t1; prot=CAJ14165/7165/BEL12_AG transposon polyprotein [Anopheles gambiae]
2R	276510	278513	0.12	+	.	ID=DGIL_AUG30_p1.2R.g74.t1; prot=ABI48302/7227/gag protein [Drosophila melanogaster]
2R	301180	312218	0.01	+	.	ID=DGIL_AUG30_p1.2R.g84.t1; prot=AAK52055/7227/RNA-directed DNA polymerase [Drosophila melanogaster]
2R	313527	313889	0.42	-	.	ID=DGIL_AUG30_p1.2R.g86.t1; prot=ABF70031/4641/DNA helicase homolog, putative [Musa acuminata]
2R	337554	338339	0.54	-	.	ID=DGIL_AUG30_p1.2R.g96.t1; prot=AAN87269/7227/ORF [Drosophila melanogaster]
2R	338403	339129	0.11	-	.	ID=DGIL_AUG30_p1.2R.g97.t1; prot=AAN87269/7227/ORF [Drosophila melanogaster]
2R	341771	342199	0.29	-	.	ID=DGIL_AUG30_p1.2R.g101.t1; prot=AAN87269/7227/ORF [Drosophila melanogaster]
2R	342251	342589	0.93	-	.	ID=DGIL_AUG30_p1.2R.g102.t1; prot=AAN87269/7227/ORF [Drosophila melanogaster]
2R	358910	360044	0.11	+	.	ID=DGIL_AUG30_p1.2R.g107.t1; prot=NP_001015274/7227/CG40137 CG40137-PA [Drosophila melanogaster]
2R	360381	364249	0.05	-	.	ID=DGIL_AUG30_p1.2R.g108.t1; prot=AAB50148/7227/reverse transcriptase polyprotein [Drosophila melanogaster]
2R	365471	367159	0.09	-	.	ID=DGIL_AUG30_p1.2R.g109.t1; prot=NP_001015171/7227/CG41066 CG41066-PA [Drosophila melanogaster]
2R	368931	369499	0.06	-	.	ID=DGIL_AUG30_p1.2R.g111.t1; prot=BAA19772/7240/unnamed protein product [Drosophila simulans]
2R	369610	370144	0.18	+	.	ID=DGIL_AUG30_p1.2R.g112.t1; prot=NP_001015274/7227/CG40137 CG40137-PA [Drosophila melanogaster]
2R	378417	378879	0.05	-	.	ID=DGIL_AUG30_p1.2R.g114.t1; prot=BAA19772/7240/unnamed protein product [Drosophila simulans]
2R	379070	379564	0.73	+	.	ID=DGIL_AUG30_p1.2R.g115.t1; prot=NP_001015274/7227/CG40137 CG40137-PA [Drosophila melanogaster]
2R	388991	389959	0.02	-	.	ID=DGIL_AUG30_p1.2R.g120.t1; prot=NP_001015361/7227/CG17429 CG17429-PA [Drosophila melanogaster]
2R	407520	407954	0.1	+	.	ID=DGIL_AUG30_p1.2R.g126.t1; prot=NP_001104415/7227/CG41247 CG41247-PA [Drosophila melanogaster]
2R	463499	464319	0.14	-	.	ID=DGIL_AUG30_p1.2R.g137.t1; prot=AAQ09229/34739/polyprotein [Antheraea mylitta]
2R	464580	465281	0.16	+	.	ID=DGIL_AUG30_p1.2R.g138.t1; prot=NP_001104028/7227/CG41234 CG41234-PA [Drosophila melanogaster]
2R	501294	501898	0.46	+	.	ID=DGIL_AUG30_p1.2R.g147.t1; prot=AAK84933/7227/SD02026p [Drosophila melanogaster]
2R	512085	512523	0.05	-	.	ID=DGIL_AUG30_p1.2R.g152.t1; prot=NP_001104129/7227/CG41586 CG41586-PA [Drosophila melanogaster]
2R	572904	574718	0.13	+	.	ID=DGIL_AUG30_p1.2R.g178.t1; prot=ZP_00373812/307502/putative retrovirus-like env glycoprotein [Wolbachia endosymbiont of Drosophila ananassae]
2R	668798	669632	0.26	+	.	ID=DGIL_AUG30_p1.2R.g198.t1; prot=AAS21248/7165/transposase [Anopheles gambiae]
2R	764918	765709	0.29	+	.	ID=DGIL_AUG30_p1.2R.g234.t1; prot=XP_001600827/7425/PREDICTED: similar to orf [Nasonia vitripennis]
2R	830099	830777	0.44	-	.	ID=DGIL_AUG30_p1.2R.g256.t1; est=BF486901; prot=NP_001036467/7227/CG41447 CG41447-PA [Drosophila melanogaster]
2R	831209	831657	0.25	-	.	ID=DGIL_AUG30_p1.2R.g257.t1; prot=NP_001015090/7227/CG41042 CG41042-PA [Drosophila melanogaster]
2R	835278	836242	0.05	+	.	ID=DGIL_AUG30_p1.2R.g260.t1; prot=NP_001104457/7227/CG41335 CG41335-PA [Drosophila melanogaster]
2R	920010	920428	0.24	-	.	ID=DGIL_AUG30_p1.2R.g288.t1; prot=NP_001015090/7227/CG41042 CG41042-PA [Drosophila melanogaster]
2R	920496	921378	0.03	-	.	ID=DGIL_AUG30_p1.2R.g289.t1; prot=CAA04050/7227/RNase H;  integrase;  protease;  reverse transcriptase [Drosophila melanogaster]
2R	925435	926118	0.24	-	.	ID=DGIL_AUG30_p1.2R.g292.t1; prot=CAA04049/7227/Gag protein [Drosophila melanogaster]
2R	975369	975954	0.08	+	.	ID=DGIL_AUG30_p1.2R.g311.t1; prot=AAM51136/7227/SD26211p [Drosophila melanogaster]
2R	996603	997128	0.07	-	.	ID=DGIL_AUG30_p1.2R.g317.t1; prot=Q8I7Q0/7227/Retrovirus-related Gag polyprotein from transposon opus
2R	998620	999098	0.21	-	.	ID=DGIL_AUG30_p1.2R.g319.t1; prot=NP_001104424/7227/CG41248 CG41248-PA [Drosophila melanogaster]
2R	1252567	1253584	0.16	+	.	ID=DGIL_AUG30_p1.2R.g408.t1; prot=AAR88541/7227/RE44040p [Drosophila melanogaster]
2R	1285987	1286346	0.29	+	.	ID=DGIL_AUG30_p1.2R.g420.t1; prot=ZP_00373812/307502/putative retrovirus-like env glycoprotein [Wolbachia endosymbiont of Drosophila ananassae]
2R	1560413	1561432	0.02	-	.	ID=DGIL_AUG30_p1.2R.g485.t1; prot=AAK61417/56958/transposase [Ceratitis rosa]
2R	1999196	1999623	0.25	-	.	ID=DGIL_AUG30_p1.2R.g694.t1; est=BE976426; prot=NP_788360/7227/CG12970 CG12970-PB, isoform B [Drosophila melanogaster]
2R	13022803	13023626	0.13	+	.	ID=DGIL_AUG30_p2.2R.g681.t1; prot=NP_611193/7227/CG11400 CG11400-PA [Drosophila melanogaster]
2R	13369629	13370323	0.41	-	.	ID=DGIL_AUG30_p2.2R.g918.t1; est=CO191983,CO191983; prot=AAM50319/7227/SD12357p [Drosophila melanogaster]
2R	14329570	14331314	0.42	+	.	ID=DGIL_AUG30_p3.2R.g381.t1; est=EC224362,BF485526,BF487088,BI641329,CO293824; prot=AAL13689/7227/GH26048p [Drosophila melanogaster]
2R	14498310	14498758	0.26	-	.	ID=DGIL_AUG30_p3.2R.g461.t1; prot=AAM29286/7227/AT17896p [Drosophila melanogaster]
2R	15515004	15516152	0.16	-	.	ID=DGIL_AUG30_p3.2R.g997.t1; prot=NP_476731/7227/smooth CG9218-PA, isoform A [Drosophila melanogaster]
2R	16449951	16450424	0.01	-	.	ID=DGIL_AUG30_p4.2R.g505.t1; prot=NP_611438/7227/CG11018 CG11018-PA [Drosophila melanogaster]
2R	16665730	16666998	0.14	-	.	ID=DGIL_AUG30_p4.2R.g599.t1; prot=CAF95397/99883/unnamed protein product [Tetraodon nigroviridis]
2R	16677823	16678608	0.12	-	.	ID=DGIL_AUG30_p4.2R.g603.t1; est=BI574647,BI583312,BI586345,BI589121,BI609020; prot=NP_611515/7227/CG15226 CG15226-PA [Drosophila melanogaster]
2R	17229405	17232235	0.52	+	.	ID=DGIL_AUG30_p4.2R.g881.t1; est=EC234843,EC234843,EC234843,EC259100,EC259100,EW712718,EW712718,EW712718,CO302654,CO302654,CO302654; prot=NP_611580/7227/CG15666 CG15666-PA [Drosophila melanogaster]
2R	17232285	17233609	0.16	+	.	ID=DGIL_AUG30_p4.2R.g882.t1; est=BI626627,BI626627; prot=AAM29623/7227/RH67628p [Drosophila melanogaster]
2R	17655676	17657701	0.77	+	.	ID=DGIL_AUG30_p5.2R.g62.t1; est=EL878179,EL878179,EL878179,EL878179,EL878179,EL878179,EL878179,EL878179; prot=ABN49253/7227/IP08073p [Drosophila melanogaster]
2R	18831178	18831920	0.27	+	.	ID=DGIL_AUG30_p5.2R.g677.t1; prot=AAM50319/7227/SD12357p [Drosophila melanogaster]
2R	18831968	18832710	0.39	+	.	ID=DGIL_AUG30_p5.2R.g678.t1; est=EC065633,EC065633,CO303184,CO303184; prot=AAM50319/7227/SD12357p [Drosophila melanogaster]
2R	18905943	18906315	0.08	+	.	ID=DGIL_AUG30_p5.2R.g723.t1; prot=XP_001892369/6279/hypothetical protein [Brugia malayi]
2R	19164410	19165679	0.23	-	.	ID=DGIL_AUG30_p5.2R.g871.t1; prot=XP_001558262/332648/hypothetical protein BC1G_02926 [Botryotinia fuckeliana B05.10]
2R	2230496	2231314	0.12	+	.	ID=DGIL_AUG30_p7.2R.g116.t1; prot=NP_001104095/7227/CG40958 CG40958-PA [Drosophila melanogaster]
2R	2240506	2243224	0.17	+	.	ID=DGIL_AUG30_p7.2R.g119.t1; prot=NP_001104095/7227/CG40958 CG40958-PA [Drosophila melanogaster]
2R	2308736	2309620	0.02	+	.	ID=DGIL_AUG30_p7.2R.g128.t1; prot=CAA81643/7227/blastopia polyprotein [Drosophila melanogaster]
2R	2324620	2324948	0.21	-	.	ID=DGIL_AUG30_p7.2R.g132.t1; prot=XP_001831945/240176/hypothetical protein CC1G_06996 [Coprinopsis cinerea okayama7#130]
2R	2325000	2325848	0.12	-	.	ID=DGIL_AUG30_p7.2R.g133.t1; prot=ABA94504/39947/transposon protein, putative, unclassified [Oryza sativa (japonica cultivar-group)]
2R	2334730	2335288	0.06	-	.	ID=DGIL_AUG30_p7.2R.g135.t1; prot=AAC64917/3847/gag-pol polyprotein [Glycine max]
2R	2373960	2375478	0.04	-	.	ID=DGIL_AUG30_p7.2R.g148.t1; prot=XP_001028992/312017/hypothetical protein TTHERM_01932220 [Tetrahymena thermophila SB210]
2R	2380069	2380854	0.13	+	.	ID=DGIL_AUG30_p7.2R.g151.t1; prot=XP_001344986/7955/PREDICTED: similar to zinc finger protein [Danio rerio]
2R	2472360	2473058	0.18	-	.	ID=DGIL_AUG30_p7.2R.g221.t1; prot=XP_385818/229533/hypothetical protein FG05642.1 [Gibberella zeae PH-1]
2R	4479404	4480472	0.83	+	.	ID=DGIL_AUG30_p8.2R.g319.t1; est=EY198595,EY198595,EY198595,EY198595,EY198607,EY198607,EY198607,EY198607; prot=ABL75655/7227/IP16980p [Drosophila melanogaster]
2R	7014307	7014825	0.18	-	.	ID=DGIL_AUG30_p9.2R.g663.t1; prot=XP_001362017/7237/GA15876-PA [Drosophila pseudoobscura]
2R	7491968	7492582	0.52	+	.	ID=DGIL_AUG30_p9.2R.g954.t1; prot=XP_001746945/431895/predicted protein [Monosiga brevicollis MX1]
2R	7665923	7666739	0.4	+	.	ID=DGIL_AUG30_p9.2R.g1035.t1; est=EL886503,EL886503,EL886503,EL886558,EL886558,EL886558,EL886721,EL886721,EL886721,EL886776,EL886776,EL886776; prot=ABN49313/7227/IP17789p [Drosophila melanogaster]
2R	7754262	7755085	0.44	+	.	ID=DGIL_AUG30_p9.2R.g1082.t1; prot=NP_523703/7227/Death associated molecule related to Mch2 CG18188-PA [Drosophila melanogaster]
2R	9050632	9051610	0.16	-	.	ID=DGIL_AUG30_p10.2R.g669.t1; est=EL875690,EL875691,EL875839,EV580906; prot=AAY54842/7227/IP05663p [Drosophila melanogaster]
2R	9947960	9948261	0.22	-	.	ID=DGIL_AUG30_p11.2R.g126.t1; est=EV583372,AW941180; prot=AAL48470/7227/GM02923p [Drosophila melanogaster]
2R	10648388	10648656	0.68	-	.	ID=DGIL_AUG30_p11.2R.g482.t1; prot=AAL25261/7227/GH01083p [Drosophila melanogaster]
2R	11262360	11262833	0.05	-	.	ID=DGIL_AUG30_p11.2R.g781.t1; est=CK134716; prot=AAO41436/7227/RE73276p [Drosophila melanogaster]
2R	11500619	11501932	0.09	+	.	ID=DGIL_AUG30_p11.2R.g904.t1; prot=ABL75664/7227/IP17040p [Drosophila melanogaster]
2R	11518079	11537815	0.22	+	.	ID=DGIL_AUG30_p11.2R.g907.t1; est=EL885678,EL885678,EL885678,EL885798,EL885798,EL885798,EL885798,EL885799,EL885799,EL885799,EL885799,AI107980,BG640028,AW940213; prot=ABL75688/7227/IP17140p [Drosophila melanogaster]
2RHet	1195	6145	0.06	-	.	ID=DGIL_AUG30_p1.2RHet.g2.t1; prot=AAA28508/7227/reverse transcriptase (put.);  putative
2RHet	6549	8315	0.01	-	.	ID=DGIL_AUG30_p1.2RHet.g3.t1; prot=NP_001015317/7227/CG40103 CG40103-PA [Drosophila melanogaster]
2RHet	20356	28128	0.02	+	.	ID=DGIL_AUG30_p1.2RHet.g5.t1; prot=AAK52055/7227/RNA-directed DNA polymerase [Drosophila melanogaster]
2RHet	29616	38123	0.01	+	.	ID=DGIL_AUG30_p1.2RHet.g6.t1; prot=AAB50148/7227/reverse transcriptase polyprotein [Drosophila melanogaster]
2RHet	42716	44373	0.08	+	.	ID=DGIL_AUG30_p1.2RHet.g9.t1; prot=CAA73721/7227/indora [Drosophila melanogaster]
2RHet	46386	51223	0.01	+	.	ID=DGIL_AUG30_p1.2RHet.g10.t1; est=EL872018,BG639505,AI530911; prot=ABI48303/7227/pol protein [Drosophila melanogaster]
2RHet	84406	87402	0.1	+	.	ID=DGIL_AUG30_p1.2RHet.g15.t1; prot=CAC79667/7227/gag protein [Drosophila melanogaster]
2RHet	88366	88950	0.25	+	.	ID=DGIL_AUG30_p1.2RHet.g17.t1; prot=AAL29132/7227/SD03311p [Drosophila melanogaster]
2RHet	89026	89690	0.14	+	.	ID=DGIL_AUG30_p1.2RHet.g18.t1; est=EC067094,EC081742,CO298290,CO319938; prot=AAL29119/7227/SD01935p [Drosophila melanogaster]
2RHet	91246	92241	0.14	+	.	ID=DGIL_AUG30_p1.2RHet.g20.t1; prot=CAA04049/7227/Gag protein [Drosophila melanogaster]
2RHet	101806	102944	0.05	+	.	ID=DGIL_AUG30_p1.2RHet.g24.t1; prot=NP_001104163/7227/CG40856 CG40856-PA [Drosophila melanogaster]
2RHet	108447	109075	0.15	-	.	ID=DGIL_AUG30_p1.2RHet.g27.t1; prot=NP_001104338/7227/CG41232 CG41232-PA [Drosophila melanogaster]
2RHet	119146	121254	0.05	+	.	ID=DGIL_AUG30_p1.2RHet.g30.t1; prot=AAX28844/7227/reverse transcriptase [Drosophila melanogaster]
2RHet	136727	148075	0.02	-	.	ID=DGIL_AUG30_p1.2RHet.g34.t1; prot=CAB99191/7227/gag-like protein [Drosophila melanogaster]
2RHet	148127	148475	0.23	-	.	ID=DGIL_AUG30_p1.2RHet.g35.t1; prot=AAN34649/7227/gag protein [Drosophila melanogaster]
2RHet	155356	155930	0.07	+	.	ID=DGIL_AUG30_p1.2RHet.g39.t1; prot=NP_001104351/7227/CG41253 CG41253-PA [Drosophila melanogaster]
2RHet	163590	167774	0.01	+	.	ID=DGIL_AUG30_p1.2RHet.g41.t1; prot=Q8I7P9/7227/Retrovirus-related Pol polyprotein from transposon opus [Includes: Protease ;  Reverse transcriptase ;  Endonuclease]
2RHet	170554	179159	0.18	-	.	ID=DGIL_AUG30_p1.2RHet.g42.t1; prot=XP_001652180/7159/hypothetical protein AaeL_AAEL006751 [Aedes aegypti]
2RHet	180770	183194	0.2	+	.	ID=DGIL_AUG30_p1.2RHet.g44.t1; prot=AAM51136/7227/SD26211p [Drosophila melanogaster]
2RHet	187240	189690	0.07	+	.	ID=DGIL_AUG30_p1.2RHet.g47.t1; prot=AAM51136/7227/SD26211p [Drosophila melanogaster]
2RHet	189780	191297	0.12	+	.	ID=DGIL_AUG30_p1.2RHet.g48.t1; prot=CAA32198/7227/polyprotein [Drosophila melanogaster]
2RHet	194609	196719	0.13	-	.	ID=DGIL_AUG30_p1.2RHet.g50.t1; prot=CAL85569/7227/CG2217 protein [Drosophila melanogaster]
2RHet	219500	220154	0.13	+	.	ID=DGIL_AUG30_p1.2RHet.g54.t1; prot=AAD03082/59916/putative transposase [Bactrocera tryoni]
2RHet	227110	230254	0.21	+	.	ID=DGIL_AUG30_p1.2RHet.g55.t1; prot=AAA28508/7227/reverse transcriptase (put.);  putative
2RHet	232743	237179	0.09	-	.	ID=DGIL_AUG30_p1.2RHet.g57.t1; prot=P04282/7227/Retrovirus-related Gag polyprotein from copia-like transposable element 17.6
2RHet	311540	314315	0.01	+	.	ID=DGIL_AUG30_p1.2RHet.g60.t1; prot=Q95SX7/7227/Probable RNA-directed DNA polymerase from transposon BS (Reverse transcriptase)
2RHet	325389	333293	0.02	+	.	ID=DGIL_AUG30_p1.2RHet.g62.t1; prot=AAV88076/4120/putative retrotransposon polyprotein [Ipomoea batatas]
2RHet	333989	334923	0.07	+	.	ID=DGIL_AUG30_p1.2RHet.g63.t1; est=EC054523,EC256305,CO322908,CO322908,CO344460; prot=XP_510921/9598/PREDICTED: mitogen-activated protein kinase 3 [Pan troglodytes]
2RHet	342719	346638	0.01	+	.	ID=DGIL_AUG30_p1.2RHet.g65.t1; prot=CAA09069/7227/polyprotein [Drosophila melanogaster]
2RHet	358859	359333	0.28	+	.	ID=DGIL_AUG30_p1.2RHet.g69.t1; prot=CAB99192/7227/endonuclease/reverse transcriptase [Drosophila melanogaster]
2RHet	359720	368148	0.02	-	.	ID=DGIL_AUG30_p1.2RHet.g70.t1; prot=AAN87266/7227/ORF1 [Drosophila melanogaster]
2RHet	370149	372093	0.18	+	.	ID=DGIL_AUG30_p1.2RHet.g71.t1; prot=ABI48302/7227/gag protein [Drosophila melanogaster]
2RHet	379678	380958	0.03	-	.	ID=DGIL_AUG30_p1.2RHet.g73.t1; prot=AAC28744/7213/env-like protein [Ceratitis capitata]
2RHet	381239	386843	0.05	+	.	ID=DGIL_AUG30_p1.2RHet.g74.t1; prot=AAA28508/7227/reverse transcriptase (put.);  putative
2RHet	398199	400660	0.01	+	.	ID=DGIL_AUG30_p1.2RHet.g78.t1; est=EC062920,EC078602,CO302953,CO320086; prot=CAA51084/7241/unnamed protein product [Drosophila subobscura]
2RHet	400929	404161	0.02	+	.	ID=DGIL_AUG30_p1.2RHet.g79.t1; prot=ABI48304/7227/env protein [Drosophila melanogaster]
2RHet	404692	407898	0.03	-	.	ID=DGIL_AUG30_p1.2RHet.g80.t1; prot=CAB99192/7227/endonuclease/reverse transcriptase [Drosophila melanogaster]
2RHet	409199	409783	0.21	+	.	ID=DGIL_AUG30_p1.2RHet.g83.t1; prot=Q9NBX5/7227/Nucleic-acid-binding protein from transposon X-element
2RHet	409839	411017	0.23	+	.	ID=DGIL_AUG30_p1.2RHet.g84.t1; prot=AAA28508/7227/reverse transcriptase (put.);  putative
2RHet	453769	454088	0.19	+	.	ID=DGIL_AUG30_p1.2RHet.g98.t1; prot=NP_001036467/7227/CG41447 CG41447-PA [Drosophila melanogaster]
2RHet	465240	465618	0.31	-	.	ID=DGIL_AUG30_p1.2RHet.g103.t1; prot=CAA65152/7227/orf [Drosophila melanogaster]
2RHet	465729	466548	0.19	+	.	ID=DGIL_AUG30_p1.2RHet.g104.t1; prot=AAA51465/7227/ORF1
2RHet	466554	467068	0.19	-	.	ID=DGIL_AUG30_p1.2RHet.g105.t1; prot=NP_001104046/7227/CG40313 CG40313-PB, isoform B [Drosophila melanogaster]
2RHet	470857	471348	0.1	-	.	ID=DGIL_AUG30_p1.2RHet.g107.t1; est=EC073741,EC078596,EC078596,EC086980,EC208207,EC208207,EC208208,EC208208,EC211696,EC242936,EC242936,EC255577,BI239984,EV585048,CA807030,more; prot=AAL90361/7227/RE36623p [Drosophila melanogaster]
2RHet	473019	473668	0.13	-	.	ID=DGIL_AUG30_p1.2RHet.g110.t1; prot=AAK61417/56958/transposase [Ceratitis rosa]
2RHet	506098	520246	0.01	+	.	ID=DGIL_AUG30_p1.2RHet.g120.t1; prot=AAK52055/7227/RNA-directed DNA polymerase [Drosophila melanogaster]
2RHet	521899	530307	0.02	-	.	ID=DGIL_AUG30_p1.2RHet.g122.t1; prot=XP_001602788/7425/PREDICTED: similar to Lian-Aa1 retrotransposon protein [Nasonia vitripennis]
2RHet	538658	539682	0.12	+	.	ID=DGIL_AUG30_p1.2RHet.g124.t1; prot=AAT47767/7227/RE14563p [Drosophila melanogaster]
2RHet	539989	540657	0.29	-	.	ID=DGIL_AUG30_p1.2RHet.g125.t1; prot=ABV82402/7227/RH22643p [Drosophila melanogaster]
2RHet	540709	544077	0.06	-	.	ID=DGIL_AUG30_p1.2RHet.g126.t1; est=CK135336; prot=AAS13459/7240/putative reverse transcriptase [Drosophila simulans]
2RHet	557018	559177	0.02	+	.	ID=DGIL_AUG30_p1.2RHet.g133.t1; prot=P16425/7227/Putative 115 kDa protein in type-1 retrotransposable element R1DM (Putative 115 kDa protein in type I retrotransposable element R1DM) (ORF 2)
2RHet	559198	561757	0.02	-	.	ID=DGIL_AUG30_p1.2RHet.g134.t1; prot=NP_001104063/7227/CG40758 CG40758-PA [Drosophila melanogaster]
2RHet	573499	574327	0.19	-	.	ID=DGIL_AUG30_p1.2RHet.g142.t1; prot=CAA04048/7227/Envelope protein [Drosophila melanogaster]
2RHet	574773	575357	0.06	-	.	ID=DGIL_AUG30_p1.2RHet.g143.t1; prot=CAA04050/7227/RNase H;  integrase;  protease;  reverse transcriptase [Drosophila melanogaster]
2RHet	577249	578177	0.4	-	.	ID=DGIL_AUG30_p1.2RHet.g144.t1; prot=NP_001015138/7227/CG40212 CG40212-PA [Drosophila melanogaster]
2RHet	588969	589877	0.04	-	.	ID=DGIL_AUG30_p1.2RHet.g148.t1; prot=BAC57910/7165/reverse transcriptase [Anopheles gambiae]
2RHet	593168	603770	0.01	+	.	ID=DGIL_AUG30_p1.2RHet.g149.t1; prot=AAK52056/7227/envelope protein [Drosophila melanogaster]
2RHet	610138	611157	0.12	-	.	ID=DGIL_AUG30_p1.2RHet.g154.t1; prot=AAC33320/7244/epigene product [Drosophila virilis]
2RHet	626080	627067	0.07	-	.	ID=DGIL_AUG30_p1.2RHet.g157.t1; prot=AAN34653/7227/unknown [Drosophila melanogaster]
2RHet	636217	636983	0.21	+	.	ID=DGIL_AUG30_p1.2RHet.g158.t1; prot=NP_001104089/7227/CG41573 CG41573-PA [Drosophila melanogaster]
2RHet	638697	639035	0.2	+	.	ID=DGIL_AUG30_p1.2RHet.g160.t1; prot=ZP_00373813/307502/reverse transcriptase polyprotein [Wolbachia endosymbiont of Drosophila ananassae]
2RHet	639197	644751	0.16	+	.	ID=DGIL_AUG30_p1.2RHet.g161.t1; prot=ZP_00373813/307502/reverse transcriptase polyprotein [Wolbachia endosymbiont of Drosophila ananassae]
2RHet	648393	652266	0.01	-	.	ID=DGIL_AUG30_p1.2RHet.g165.t1; prot=ZP_00373813/307502/reverse transcriptase polyprotein [Wolbachia endosymbiont of Drosophila ananassae]
2RHet	652967	659947	0.01	+	.	ID=DGIL_AUG30_p1.2RHet.g166.t1; prot=AAA28508/7227/reverse transcriptase (put.);  putative
2RHet	659994	661426	0.07	-	.	ID=DGIL_AUG30_p1.2RHet.g167.t1; prot=NP_001104130/7227/CG41587 CG41587-PA [Drosophila melanogaster]
2RHet	674807	677736	0.02	-	.	ID=DGIL_AUG30_p1.2RHet.g172.t1; est=EC211293,CO300916,CO326539; prot=NP_001104163/7227/CG40856 CG40856-PA [Drosophila melanogaster]
2RHet	680527	690453	0.01	+	.	ID=DGIL_AUG30_p1.2RHet.g173.t1; est=EC076562,EC088020,BP559254,BI635689,AI532900,AI533084,AI533520,AI542738,AI543471,CO304279; prot=T13250/7227/hypothetical protein - fruit fly (Drosophila melanogaster) transposon BEL
2RHet	690516	701136	0.01	-	.	ID=DGIL_AUG30_p1.2RHet.g174.t1; est=BG639610,BG639644,CK136108,CK604695,CK604743,CO194950; prot=AAK77263/7227/GH03753p [Drosophila melanogaster]
2RHet	710824	720356	0.01	-	.	ID=DGIL_AUG30_p1.2RHet.g175.t1; est=EC062861,EC062880,EC070385,EC073702,EC074250,EC086290,BE976996,EC201232,EC216391,EC222595,EC241032,EC245560,EC264779,EC267267,BP560038,more; prot=AAL25501/7227/SD04061p [Drosophila melanogaster]
2RHet	740107	740756	0.16	-	.	ID=DGIL_AUG30_p1.2RHet.g179.t1; prot=AAC72919/13123/reverse transcriptase [Lymantria dispar]
2RHet	742747	752369	0.06	+	.	ID=DGIL_AUG30_p1.2RHet.g182.t1; prot=CAA65152/7227/orf [Drosophila melanogaster]
2RHet	752395	757406	0.04	-	.	ID=DGIL_AUG30_p1.2RHet.g183.t1; prot=NP_001015171/7227/CG41066 CG41066-PA [Drosophila melanogaster]
2RHet	759108	760076	0.16	-	.	ID=DGIL_AUG30_p1.2RHet.g185.t1; prot=NP_001036646/7227/CG41458 CG41458-PA [Drosophila melanogaster]
2RHet	761107	761641	0.14	+	.	ID=DGIL_AUG30_p1.2RHet.g186.t1; prot=ZP_00373731/307502/gag protein [Wolbachia endosymbiont of Drosophila ananassae]
2RHet	761747	765312	0.04	+	.	ID=DGIL_AUG30_p1.2RHet.g187.t1; prot=NP_001015297/7227/CG40124 CG40124-PA [Drosophila melanogaster]
2RHet	771631	774956	0.01	-	.	ID=DGIL_AUG30_p1.2RHet.g188.t1; est=EC061873,CO280324; prot=AAM11672/7227/polyprotein [Drosophila melanogaster]
2RHet	776047	784841	0.05	+	.	ID=DGIL_AUG30_p1.2RHet.g189.t1; prot=ZP_00373813/307502/reverse transcriptase polyprotein [Wolbachia endosymbiont of Drosophila ananassae]
2RHet	787417	789262	0.12	+	.	ID=DGIL_AUG30_p1.2RHet.g192.t1; prot=NP_001015138/7227/CG40212 CG40212-PA [Drosophila melanogaster]
2RHet	790587	791431	0.08	+	.	ID=DGIL_AUG30_p1.2RHet.g193.t1; prot=CAA04048/7227/Envelope protein [Drosophila melanogaster]
2RHet	801757	803037	0.08	+	.	ID=DGIL_AUG30_p1.2RHet.g199.t1; prot=ABI96220/7220/unknown [Drosophila erecta]
2RHet	808541	815564	0.01	-	.	ID=DGIL_AUG30_p1.2RHet.g200.t1; est=AI404911; prot=CAA65152/7227/orf [Drosophila melanogaster]
2RHet	816205	817591	0.1	+	.	ID=DGIL_AUG30_p1.2RHet.g201.t1; prot=CAO99233/30013/envelope protein [Drosophila madeirensis]
2RHet	817666	820374	0.04	-	.	ID=DGIL_AUG30_p1.2RHet.g202.t1; prot=Q9NBX4/7227/Probable RNA-directed DNA polymerase from transposon X-element (Reverse transcriptase)
2RHet	879245	886301	0.04	+	.	ID=DGIL_AUG30_p1.2RHet.g211.t1; prot=AAA28508/7227/reverse transcriptase (put.);  putative
2RHet	891245	900814	0.01	+	.	ID=DGIL_AUG30_p1.2RHet.g214.t1; est=BI584448,BI621580; prot=CAB99192/7227/endonuclease/reverse transcriptase [Drosophila melanogaster]
2RHet	932066	932714	0.28	-	.	ID=DGIL_AUG30_p1.2RHet.g218.t1; prot=AAK52057/7227/gag protein [Drosophila melanogaster]
2RHet	939006	944424	0.01	-	.	ID=DGIL_AUG30_p1.2RHet.g221.t1; prot=AAK52055/7227/RNA-directed DNA polymerase [Drosophila melanogaster]
2RHet	948125	950170	0.08	+	.	ID=DGIL_AUG30_p1.2RHet.g223.t1; prot=AAN34649/7227/gag protein [Drosophila melanogaster]
2RHet	955395	955869	0.1	+	.	ID=DGIL_AUG30_p1.2RHet.g225.t1; prot=CAD32253/7227/gag-pol polyprotein precursor;  hypothetical protein [Drosophila melanogaster]
2RHet	963552	964944	0.17	-	.	ID=DGIL_AUG30_p1.2RHet.g227.t1; est=AI389591,AI389602; prot=AAT47767/7227/RE14563p [Drosophila melanogaster]
2RHet	979277	982425	0.1	-	.	ID=DGIL_AUG30_p1.2RHet.g228.t1; prot=CAA35586/7227/ORF1 for putative RNA binding protein [Drosophila melanogaster]
2RHet	982716	983490	0.09	+	.	ID=DGIL_AUG30_p1.2RHet.g229.t1; prot=AAK52055/7227/RNA-directed DNA polymerase [Drosophila melanogaster]
2RHet	984086	984666	0.25	+	.	ID=DGIL_AUG30_p1.2RHet.g230.t1; prot=XP_001865366/7176/zinc knuckle domain protein [Culex pipiens quinquefasciatus]
2RHet	994396	997468	0.27	+	.	ID=DGIL_AUG30_p1.2RHet.g235.t1; est=EC057987,EC236473,CO190237,CO309801,DN153861; prot=ZP_00373813/307502/reverse transcriptase polyprotein [Wolbachia endosymbiont of Drosophila ananassae]
2RHet	992026	998839	0.11	+	.	ID=DGIL_AUG30_p1.2RHet.g236.t1; est=EC057987,EC086442,EC232644,EC236473,EC248786,EC248786,EC248786,EC260640,CO190237,CO299137,CO309801,CO325719,CO343711,DN153861; prot=ZP_00373812/307502/putative retrovirus-like env glycoprotein [Wolbachia endosymbiont of Drosophila ananassae]
2RHet	1009086	1013574	0.04	+	.	ID=DGIL_AUG30_p1.2RHet.g241.t1; est=EC076689,EC225791,CO313835; prot=CAA65152/7227/orf [Drosophila melanogaster]
2RHet	1071666	1072922	0.08	+	.	ID=DGIL_AUG30_p1.2RHet.g244.t1; prot=ZP_00373813/307502/reverse transcriptase polyprotein [Wolbachia endosymbiont of Drosophila ananassae]
2RHet	1073106	1074923	0.12	+	.	ID=DGIL_AUG30_p1.2RHet.g245.t1; est=EC073476,EC090613,EC198792,EC204284,CO190703,CO283265,CO318207,CO332192; prot=AAY54894/7227/IP06032p [Drosophila melanogaster]
2RHet	1075736	1077759	0.04	+	.	ID=DGIL_AUG30_p1.2RHet.g246.t1; prot=NP_001104028/7227/CG41234 CG41234-PA [Drosophila melanogaster]
2RHet	1078775	1079255	0.49	-	.	ID=DGIL_AUG30_p1.2RHet.g248.t1; prot=P21328/7227/RNA-directed DNA polymerase from mobile element jockey (Reverse transcriptase)
2RHet	1084725	1085885	0.08	-	.	ID=DGIL_AUG30_p1.2RHet.g252.t1; prot=CAA32198/7227/polyprotein [Drosophila melanogaster]
2RHet	1092546	1095559	0.1	+	.	ID=DGIL_AUG30_p1.2RHet.g260.t1; est=EL883032,BI581370,BI586368,BI611941,AI260906; prot=AAL49291/7227/RH02410p [Drosophila melanogaster]
2RHet	1112536	1124034	0.02	+	.	ID=DGIL_AUG30_p1.2RHet.g262.t1; est=CK604272; prot=T13250/7227/hypothetical protein - fruit fly (Drosophila melanogaster) transposon BEL
2RHet	1125996	1130540	0.13	+	.	ID=DGIL_AUG30_p1.2RHet.g263.t1; prot=T13250/7227/hypothetical protein - fruit fly (Drosophila melanogaster) transposon BEL
2RHet	1131726	1132828	0.07	+	.	ID=DGIL_AUG30_p1.2RHet.g264.t1; prot=CAA08806/7227/Gag protein [Drosophila melanogaster]
2RHet	1134266	1140291	0.02	+	.	ID=DGIL_AUG30_p1.2RHet.g266.t1; prot=P10403/7227/Retrovirus-related Env polyprotein from transposon gypsy
2RHet	1282071	1286425	0.01	+	.	ID=DGIL_AUG30_p1.2RHet.g278.t1; prot=AAK77263/7227/GH03753p [Drosophila melanogaster]
2RHet	1316680	1317324	0.26	+	.	ID=DGIL_AUG30_p1.2RHet.g288.t1; prot=BAA57030/7240/unnamed protein product [Drosophila simulans]
2RHet	1317930	1319314	0.09	+	.	ID=DGIL_AUG30_p1.2RHet.g289.t1; prot=BAD01589/7240/hypothetical protein [Drosophila simulans]
2RHet	1321280	1322289	0.22	+	.	ID=DGIL_AUG30_p1.2RHet.g291.t1; prot=BAD01589/7240/hypothetical protein [Drosophila simulans]
2RHet	1337191	1353719	0.02	-	.	ID=DGIL_AUG30_p1.2RHet.g294.t1; prot=AAK52055/7227/RNA-directed DNA polymerase [Drosophila melanogaster]
2RHet	1381631	1382049	0.6	-	.	ID=DGIL_AUG30_p1.2RHet.g302.t1; prot=ZP_00373653/307502/indora [Wolbachia endosymbiont of Drosophila ananassae]
2RHet	1382681	1383429	0.05	-	.	ID=DGIL_AUG30_p1.2RHet.g304.t1; prot=S18211/7244/hypothetical protein 2 - fruit fly (Drosophila virilis) retrotransposon Ulysses
2RHet	1384431	1384979	0.14	-	.	ID=DGIL_AUG30_p1.2RHet.g306.t1; prot=CAD32253/7227/gag-pol polyprotein precursor;  hypothetical protein [Drosophila melanogaster]
2RHet	1385280	1386546	0.06	+	.	ID=DGIL_AUG30_p1.2RHet.g307.t1; est=EL878789; prot=AAL49291/7227/RH02410p [Drosophila melanogaster]
2RHet	1388741	1389169	0.08	-	.	ID=DGIL_AUG30_p1.2RHet.g309.t1; prot=ABD72267/7264/pol polyprotein [Drosophila buzzatii]
2RHet	1389459	1390129	0.07	-	.	ID=DGIL_AUG30_p1.2RHet.g310.t1; prot=NP_001104160/7227/CG40924 CG40924-PA [Drosophila melanogaster]
2RHet	1394601	1395029	0.27	-	.	ID=DGIL_AUG30_p1.2RHet.g312.t1; prot=ZP_00373653/307502/indora [Wolbachia endosymbiont of Drosophila ananassae]
2RHet	1397171	1397779	0.41	-	.	ID=DGIL_AUG30_p1.2RHet.g317.t1; prot=ABD72267/7264/pol polyprotein [Drosophila buzzatii]
2RHet	1398015	1398669	0.05	-	.	ID=DGIL_AUG30_p1.2RHet.g318.t1; prot=NP_001104160/7227/CG40924 CG40924-PA [Drosophila melanogaster]
2RHet	1403161	1403579	0.79	-	.	ID=DGIL_AUG30_p1.2RHet.g320.t1; prot=ZP_00373653/307502/indora [Wolbachia endosymbiont of Drosophila ananassae]
2RHet	1405831	1406289	0.18	-	.	ID=DGIL_AUG30_p1.2RHet.g325.t1; prot=ABD72267/7264/pol polyprotein [Drosophila buzzatii]
2RHet	1406571	1407239	0.26	-	.	ID=DGIL_AUG30_p1.2RHet.g326.t1; prot=NP_001104160/7227/CG40924 CG40924-PA [Drosophila melanogaster]
2RHet	1416700	1420356	0.05	+	.	ID=DGIL_AUG30_p1.2RHet.g330.t1; prot=Q9NBX4/7227/Probable RNA-directed DNA polymerase from transposon X-element (Reverse transcriptase)
2RHet	1443590	1444932	0.01	+	.	ID=DGIL_AUG30_p1.2RHet.g336.t1; prot=CAB99192/7227/endonuclease/reverse transcriptase [Drosophila melanogaster]
2RHet	1449940	1451419	0.06	-	.	ID=DGIL_AUG30_p1.2RHet.g339.t1; prot=NP_001036405/7227/CG41121 CG41121-PA, isoform A [Drosophila melanogaster]
2RHet	1462960	1465777	0.04	+	.	ID=DGIL_AUG30_p1.2RHet.g342.t1; est=EC070160,EC256412,CO288499,CO345160; prot=AAN87269/7227/ORF [Drosophila melanogaster]
2RHet	1470203	1471109	0.01	-	.	ID=DGIL_AUG30_p1.2RHet.g343.t1; est=EC263380; prot=P04282/7227/Retrovirus-related Gag polyprotein from copia-like transposable element 17.6
2RHet	1481717	1484098	0.02	-	.	ID=DGIL_AUG30_p1.2RHet.g345.t1; prot=NP_001104409/7227/CG42228 CG42228-PA [Drosophila melanogaster]
2RHet	1494949	1497338	0.02	-	.	ID=DGIL_AUG30_p1.2RHet.g346.t1; prot=NP_001104409/7227/CG42228 CG42228-PA [Drosophila melanogaster]
2RHet	1545405	1547018	0.05	-	.	ID=DGIL_AUG30_p1.2RHet.g347.t1; est=EV585825; prot=XP_001654451/7159/hypothetical protein AaeL_AAEL010345 [Aedes aegypti]
2RHet	1553239	1555243	0.15	+	.	ID=DGIL_AUG30_p1.2RHet.g350.t1; prot=AAM29225/7227/AT08427p [Drosophila melanogaster]
2RHet	1582199	1590663	0.3	+	.	ID=DGIL_AUG30_p1.2RHet.g356.t1; prot=ZP_00373907/307502/envelope protein [Wolbachia endosymbiont of Drosophila ananassae]
2RHet	1590729	1591083	0.23	+	.	ID=DGIL_AUG30_p1.2RHet.g357.t1; prot=AAK84933/7227/SD02026p [Drosophila melanogaster]
2RHet	1608680	1611728	0.01	-	.	ID=DGIL_AUG30_p1.2RHet.g362.t1; prot=AAB50148/7227/reverse transcriptase polyprotein [Drosophila melanogaster]
2RHet	1615943	1616268	0.61	-	.	ID=DGIL_AUG30_p1.2RHet.g364.t1; prot=NP_001015391/7227/CG41126 CG41126-PA [Drosophila melanogaster]
2RHet	1618569	1619834	0.06	+	.	ID=DGIL_AUG30_p1.2RHet.g366.t1; prot=XP_001654451/7159/hypothetical protein AaeL_AAEL010345 [Aedes aegypti]
2RHet	1633629	1637749	0.04	+	.	ID=DGIL_AUG30_p1.2RHet.g372.t1; est=BI568174,BI614447,BI619821,CO309271; prot=CAD32253/7227/gag-pol polyprotein precursor;  hypothetical protein [Drosophila melanogaster]
2RHet	1652801	1653978	0.23	-	.	ID=DGIL_AUG30_p1.2RHet.g378.t1; prot=AAC28743/7213/pol-like protein [Ceratitis capitata]
2RHet	1655029	1655731	0.09	+	.	ID=DGIL_AUG30_p1.2RHet.g380.t1; prot=ZP_00373813/307502/reverse transcriptase polyprotein [Wolbachia endosymbiont of Drosophila ananassae]
2RHet	1656269	1656994	0.05	+	.	ID=DGIL_AUG30_p1.2RHet.g381.t1; prot=ZP_00373731/307502/gag protein [Wolbachia endosymbiont of Drosophila ananassae]
2RHet	1667696	1670648	0.19	-	.	ID=DGIL_AUG30_p1.2RHet.g385.t1; prot=ZP_00373813/307502/reverse transcriptase polyprotein [Wolbachia endosymbiont of Drosophila ananassae]
2RHet	1670792	1673578	0.03	-	.	ID=DGIL_AUG30_p1.2RHet.g386.t1; prot=NP_001015297/7227/CG40124 CG40124-PA [Drosophila melanogaster]
2RHet	1681830	1689048	0.02	-	.	ID=DGIL_AUG30_p1.2RHet.g390.t1; prot=CAB99192/7227/endonuclease/reverse transcriptase [Drosophila melanogaster]
2RHet	1701039	1702162	0.1	+	.	ID=DGIL_AUG30_p1.2RHet.g396.t1; prot=AAK52055/7227/RNA-directed DNA polymerase [Drosophila melanogaster]
2RHet	1731079	1732848	0.11	+	.	ID=DGIL_AUG30_p1.2RHet.g400.t1; est=EC207137,EC251192,EC257516,CO177220,CO332801,CO344882; prot=S00954/7227/pol polyprotein - fruit fly (Drosophila melanogaster) transposon 1731
2RHet	1745970	1747278	0.01	-	.	ID=DGIL_AUG30_p1.2RHet.g404.t1; prot=NP_001104445/7227/CG41286 CG41286-PA [Drosophila melanogaster]
2RHet	1792929	1793415	0.2	+	.	ID=DGIL_AUG30_p1.2RHet.g411.t1; prot=CAA04050/7227/RNase H;  integrase;  protease;  reverse transcriptase [Drosophila melanogaster]
2RHet	1793430	1794568	0.07	-	.	ID=DGIL_AUG30_p1.2RHet.g412.t1; prot=NP_001104370/7227/CG41138 CG41138-PB, isoform B [Drosophila melanogaster]
2RHet	1813999	1814338	0.26	+	.	ID=DGIL_AUG30_p1.2RHet.g418.t1; prot=AAB34004/30724/pol gene product {Gypsy/Ty3-class retrotransposon Cpr1} [Clupea pallasi=herring, testis, sperm, Peptide Transposon, 175 aa]
2RHet	1814979	1815277	0.23	+	.	ID=DGIL_AUG30_p1.2RHet.g419.t1; prot=NP_001104445/7227/CG41286 CG41286-PA [Drosophila melanogaster]
2RHet	1820350	1830508	0.06	-	.	ID=DGIL_AUG30_p1.2RHet.g421.t1; prot=AAK52060/7227/gag protein [Drosophila melanogaster]
2RHet	1834900	1835498	0.53	-	.	ID=DGIL_AUG30_p1.2RHet.g422.t1; prot=NP_001104063/7227/CG40758 CG40758-PA [Drosophila melanogaster]
2RHet	1835550	1837548	0.07	-	.	ID=DGIL_AUG30_p1.2RHet.g423.t1; prot=ZP_00373907/307502/envelope protein [Wolbachia endosymbiont of Drosophila ananassae]
2RHet	1844896	1847592	0.06	-	.	ID=DGIL_AUG30_p1.2RHet.g425.t1; prot=AAK52060/7227/gag protein [Drosophila melanogaster]
2RHet	1849573	1862724	0.32	+	.	ID=DGIL_AUG30_p1.2RHet.g426.t1; est=EC072538,EC239157,EC239157,EC239157,BI238376,BI238376,BI238376,BI238376,BI580508,BI580508,BI580508,BI580508,CO328706; prot=XP_001651224/7159/defective proboscis extension response, putative [Aedes aegypti]
2RHet	1871693	1873345	0.08	+	.	ID=DGIL_AUG30_p1.2RHet.g428.t1; prot=NP_001104345/7227/CG41254 CG41254-PA [Drosophila melanogaster]
2RHet	1874823	1877077	0.03	+	.	ID=DGIL_AUG30_p1.2RHet.g430.t1; prot=AAS13459/7240/putative reverse transcriptase [Drosophila simulans]
2RHet	1877813	1882977	0.06	+	.	ID=DGIL_AUG30_p1.2RHet.g431.t1; est=EC060874,EC215827,CO264184,CO319097,CO329031; prot=Q95SX7/7227/Probable RNA-directed DNA polymerase from transposon BS (Reverse transcriptase)
2RHet	1890504	1894132	0.01	-	.	ID=DGIL_AUG30_p1.2RHet.g433.t1; prot=BAA57030/7240/unnamed protein product [Drosophila simulans]
2RHet	1909350	1914272	0.01	-	.	ID=DGIL_AUG30_p1.2RHet.g436.t1; prot=AAB92393/7241/reverse transcriptase [Drosophila subobscura]
2RHet	1914993	1916128	0.01	+	.	ID=DGIL_AUG30_p1.2RHet.g437.t1; prot=P10403/7227/Retrovirus-related Env polyprotein from transposon gypsy
2RHet	1916303	1917687	0.12	+	.	ID=DGIL_AUG30_p1.2RHet.g438.t1; prot=AAN87269/7227/ORF [Drosophila melanogaster]
2RHet	1917743	1917987	0.48	+	.	ID=DGIL_AUG30_p1.2RHet.g439.t1; prot=AAN87269/7227/ORF [Drosophila melanogaster]
2RHet	1918043	1922021	0.04	+	.	ID=DGIL_AUG30_p1.2RHet.g440.t1; prot=P16425/7227/Putative 115 kDa protein in type-1 retrotransposable element R1DM (Putative 115 kDa protein in type I retrotransposable element R1DM) (ORF 2)
2RHet	1924053	1925537	0.07	+	.	ID=DGIL_AUG30_p1.2RHet.g442.t1; prot=S70430/7227/hypothetical protein 4 - fruit fly (Drosophila melanogaster) retrotransposon mgd1
2RHet	1930273	1935192	0.02	+	.	ID=DGIL_AUG30_p1.2RHet.g445.t1; prot=AAB50148/7227/reverse transcriptase polyprotein [Drosophila melanogaster]
2RHet	1935393	1935807	0.43	+	.	ID=DGIL_AUG30_p1.2RHet.g446.t1; prot=S00953/7227/gag protein - fruit fly (Drosophila melanogaster) transposon 1731
2RHet	1954067	1955342	0.46	-	.	ID=DGIL_AUG30_p1.2RHet.g451.t1; prot=AAX33364/7227/RH66770p [Drosophila melanogaster]
2RHet	1964353	1965937	0.16	+	.	ID=DGIL_AUG30_p1.2RHet.g453.t1; prot=XP_001661115/7159/hypothetical protein AaeL_AAEL010865 [Aedes aegypti]
2RHet	1973463	1976791	0.03	+	.	ID=DGIL_AUG30_p1.2RHet.g456.t1; prot=XP_001122068/7460/PREDICTED: similar to dpr9 CG33485-PA, partial [Apis mellifera]
2RHet	1981610	1985262	0.06	-	.	ID=DGIL_AUG30_p1.2RHet.g457.t1; est=EC245294,CO281393; prot=AAM11672/7227/polyprotein [Drosophila melanogaster]
2RHet	1988083	1989630	0.07	+	.	ID=DGIL_AUG30_p1.2RHet.g458.t1; prot=ZP_00373731/307502/gag protein [Wolbachia endosymbiont of Drosophila ananassae]
2RHet	2057056	2057832	0.29	+	.	ID=DGIL_AUG30_p2.2RHet.g16.t1; prot=NP_001015149/7227/CG41059 CG41059-PA [Drosophila melanogaster]
2RHet	2067626	2072043	0.05	+	.	ID=DGIL_AUG30_p2.2RHet.g18.t1; prot=AAK84933/7227/SD02026p [Drosophila melanogaster]
2RHet	2072856	2073160	0.75	+	.	ID=DGIL_AUG30_p2.2RHet.g20.t1; prot=XP_001188191/7668/PREDICTED: similar to fizzy-related protein [Strongylocentrotus purpuratus]
2RHet	2073216	2073630	0.15	+	.	ID=DGIL_AUG30_p2.2RHet.g21.t1; prot=XP_001197400/7668/PREDICTED: similar to transposase, partial [Strongylocentrotus purpuratus]
2RHet	2087187	2089425	0.07	-	.	ID=DGIL_AUG30_p2.2RHet.g24.t1; est=AI530893,AI546515; prot=AAM51136/7227/SD26211p [Drosophila melanogaster]
2RHet	2090728	2093775	0.05	-	.	ID=DGIL_AUG30_p2.2RHet.g25.t1; est=BG637143,BG640608,BI583249,BI588976,BI606015,BI618116,BI625205,BI632405,BI635025,BI635573,BI635725,AA141135,AI135089,AI403245,AI530807,more; prot=S00954/7227/pol polyprotein - fruit fly (Drosophila melanogaster) transposon 1731
2RHet	2134786	2139786	0.09	+	.	ID=DGIL_AUG30_p2.2RHet.g30.t1; prot=AAB65093/7159/Lian-Aa1 retrotransposon protein [Aedes aegypti]
2RHet	2144713	2151755	0.05	-	.	ID=DGIL_AUG30_p2.2RHet.g31.t1; est=EC217279,CO185438; prot=AAK77263/7227/GH03753p [Drosophila melanogaster]
2RHet	2206036	2214270	0.01	+	.	ID=DGIL_AUG30_p2.2RHet.g43.t1; prot=Q8I7P9/7227/Retrovirus-related Pol polyprotein from transposon opus [Includes: Protease ;  Reverse transcriptase ;  Endonuclease]
2RHet	2236613	2237665	0.03	-	.	ID=DGIL_AUG30_p2.2RHet.g49.t1; prot=Q9NBX4/7227/Probable RNA-directed DNA polymerase from transposon X-element (Reverse transcriptase)
2RHet	2240262	2243765	0.03	-	.	ID=DGIL_AUG30_p2.2RHet.g51.t1; prot=CAA41925/7229/unnamed protein product [Drosophila miranda]
2RHet	2264416	2265060	0.15	+	.	ID=DGIL_AUG30_p2.2RHet.g58.t1; prot=CAJ14165/7165/BEL12_AG transposon polyprotein [Anopheles gambiae]
2RHet	2266182	2267265	0.25	-	.	ID=DGIL_AUG30_p2.2RHet.g59.t1; est=EL877297,EL877297,EL877298,EL877298,EL877470,EL877470,EL877471,EL877471,EL877551,EL877551,AA141534,AA141534; prot=AAY55125/7227/IP07237p [Drosophila melanogaster]
2RHet	2268176	2268830	0.35	+	.	ID=DGIL_AUG30_p2.2RHet.g60.t1; prot=NP_001104102/7227/CG40600 CG40600-PA, isoform A [Drosophila melanogaster]
2RHet	2276071	2284165	0.01	-	.	ID=DGIL_AUG30_p2.2RHet.g62.t1; prot=CAD32253/7227/gag-pol polyprotein precursor;  hypothetical protein [Drosophila melanogaster]
2RHet	2309098	2314136	0.2	-	.	ID=DGIL_AUG30_p2.2RHet.g69.t1; prot=Q9NBX4/7227/Probable RNA-directed DNA polymerase from transposon X-element (Reverse transcriptase)
2RHet	2314237	2314542	0.21	+	.	ID=DGIL_AUG30_p2.2RHet.g70.t1; prot=NP_001104163/7227/CG40856 CG40856-PA [Drosophila melanogaster]
2RHet	2323137	2323676	0.05	-	.	ID=DGIL_AUG30_p2.2RHet.g76.t1; prot=AAL48441/7227/AT25392p [Drosophila melanogaster]
2RHet	2325308	2340616	0.02	-	.	ID=DGIL_AUG30_p2.2RHet.g79.t1; prot=AAA28508/7227/reverse transcriptase (put.);  putative
2RHet	2347797	2348301	0.36	+	.	ID=DGIL_AUG30_p2.2RHet.g81.t1; prot=NP_001104163/7227/CG40856 CG40856-PA [Drosophila melanogaster]
2RHet	2362507	2370469	0.03	+	.	ID=DGIL_AUG30_p2.2RHet.g90.t1; prot=AAK52055/7227/RNA-directed DNA polymerase [Drosophila melanogaster]
2RHet	2371297	2372436	0.04	+	.	ID=DGIL_AUG30_p2.2RHet.g91.t1; prot=BAA57030/7240/unnamed protein product [Drosophila simulans]
2RHet	2374207	2375643	0.06	+	.	ID=DGIL_AUG30_p2.2RHet.g93.t1; prot=BAD01589/7240/hypothetical protein [Drosophila simulans]
2RHet	2394627	2395523	0.3	+	.	ID=DGIL_AUG30_p2.2RHet.g105.t1; prot=CAA65152/7227/orf [Drosophila melanogaster]
2RHet	2396977	2397714	0.03	+	.	ID=DGIL_AUG30_p2.2RHet.g106.t1; prot=NP_001104063/7227/CG40758 CG40758-PA [Drosophila melanogaster]
2RHet	2401207	2402107	0.33	+	.	ID=DGIL_AUG30_p2.2RHet.g108.t1; prot=CAA65152/7227/orf [Drosophila melanogaster]
2RHet	2403547	2404259	0.03	+	.	ID=DGIL_AUG30_p2.2RHet.g109.t1; prot=NP_001104063/7227/CG40758 CG40758-PA [Drosophila melanogaster]
2RHet	2413834	2414216	0.12	-	.	ID=DGIL_AUG30_p2.2RHet.g111.t1; prot=AAN34649/7227/gag protein [Drosophila melanogaster]
2RHet	2414317	2417217	0.06	+	.	ID=DGIL_AUG30_p2.2RHet.g112.t1; prot=AAA28508/7227/reverse transcriptase (put.);  putative
2RHet	2419707	2435273	0.03	+	.	ID=DGIL_AUG30_p2.2RHet.g114.t1; est=BI636020; prot=AAK77263/7227/GH03753p [Drosophila melanogaster]
2RHet	2435277	2440906	0.44	-	.	ID=DGIL_AUG30_p2.2RHet.g115.t1; prot=BAD01589/7240/hypothetical protein [Drosophila simulans]
2RHet	2456259	2458236	0.06	-	.	ID=DGIL_AUG30_p2.2RHet.g120.t1; prot=XP_001343884/7955/PREDICTED: similar to novel transposon [Danio rerio]
2RHet	2583698	2585106	0.14	-	.	ID=DGIL_AUG30_p2.2RHet.g125.t1; prot=XP_793701/7668/PREDICTED: similar to transposase [Strongylocentrotus purpuratus]
2RHet	2589543	2593836	0.05	-	.	ID=DGIL_AUG30_p2.2RHet.g131.t1; prot=ZP_00373907/307502/envelope protein [Wolbachia endosymbiont of Drosophila ananassae]
2RHet	2619788	2626236	0.13	-	.	ID=DGIL_AUG30_p2.2RHet.g132.t1; prot=AAN34653/7227/unknown [Drosophila melanogaster]
2RHet	2783543	2793991	0.03	-	.	ID=DGIL_AUG30_p2.2RHet.g139.t1; prot=AAK77263/7227/GH03753p [Drosophila melanogaster]
2RHet	2831903	2838923	0.01	-	.	ID=DGIL_AUG30_p2.2RHet.g142.t1; est=BI607473; prot=AAK52055/7227/RNA-directed DNA polymerase [Drosophila melanogaster]
2RHet	2860483	2861123	0.06	-	.	ID=DGIL_AUG30_p2.2RHet.g146.t1; prot=NP_001015297/7227/CG40124 CG40124-PA [Drosophila melanogaster]
2RHet	2865175	2865683	0.87	-	.	ID=DGIL_AUG30_p2.2RHet.g149.t1; prot=NP_001015297/7227/CG40124 CG40124-PA [Drosophila melanogaster]
2RHet	2866585	2867093	0.22	-	.	ID=DGIL_AUG30_p2.2RHet.g151.t1; prot=NP_001104130/7227/CG41587 CG41587-PA [Drosophila melanogaster]
2RHet	2867216	2868983	0.12	-	.	ID=DGIL_AUG30_p2.2RHet.g152.t1; prot=AAY54894/7227/IP06032p [Drosophila melanogaster]
2RHet	2872124	2872628	0.96	+	.	ID=DGIL_AUG30_p2.2RHet.g155.t1; prot=NP_001015297/7227/CG40124 CG40124-PA [Drosophila melanogaster]
2RHet	2879134	2879748	0.63	+	.	ID=DGIL_AUG30_p2.2RHet.g158.t1; prot=ZP_00373812/307502/putative retrovirus-like env glycoprotein [Wolbachia endosymbiont of Drosophila ananassae]
2RHet	2893300	2894503	0.02	-	.	ID=DGIL_AUG30_p2.2RHet.g159.t1; prot=ZP_00373812/307502/putative retrovirus-like env glycoprotein [Wolbachia endosymbiont of Drosophila ananassae]
2RHet	2896504	2897378	0.04	+	.	ID=DGIL_AUG30_p2.2RHet.g161.t1; prot=XP_001602661/7425/PREDICTED: similar to protease, reverse transcriptase, ribonuclease H, integrase [Nasonia vitripennis]
2RHet	2922014	2935978	0.01	+	.	ID=DGIL_AUG30_p2.2RHet.g165.t1; est=BI584777,BI585107,BI586285,BI606742,BI609836,BI611563,BI612148,BI613933,BI616428,BI620262,BI622436,BI627745; prot=AAK52055/7227/RNA-directed DNA polymerase [Drosophila melanogaster]
2RHet	2982434	2984510	0.05	+	.	ID=DGIL_AUG30_p2.2RHet.g166.t1; prot=CAB99192/7227/endonuclease/reverse transcriptase [Drosophila melanogaster]
2RHet	2994128	2995034	0.3	+	.	ID=DGIL_AUG30_p2.2RHet.g168.t1; prot=AAM11673/7227/gag protein [Drosophila melanogaster]
2RHet	2996338	3001506	0.01	+	.	ID=DGIL_AUG30_p2.2RHet.g169.t1; est=CO294829,CO340714; prot=AAM11674/7227/pol protein [Drosophila melanogaster]
2RHet	3002987	3009847	0.01	-	.	ID=DGIL_AUG30_p2.2RHet.g170.t1; prot=AAM51140/7227/SD27140p [Drosophila melanogaster]
2RHet	3046288	3048060	0.02	+	.	ID=DGIL_AUG30_p2.2RHet.g176.t1; prot=P21329/7221/RNA-directed DNA polymerase from mobile element jockey (Reverse transcriptase)
2RHet	3081388	3084639	0.04	+	.	ID=DGIL_AUG30_p2.2RHet.g183.t1; prot=AAK77263/7227/GH03753p [Drosophila melanogaster]
2RHet	3086118	3089197	0.07	-	.	ID=DGIL_AUG30_p2.2RHet.g184.t1; prot=AAA28508/7227/reverse transcriptase (put.);  putative
2RHet	3096559	3105747	0.1	-	.	ID=DGIL_AUG30_p2.2RHet.g187.t1; prot=NP_001104063/7227/CG40758 CG40758-PA [Drosophila melanogaster]
2RHet	3108091	3108637	0.05	-	.	ID=DGIL_AUG30_p2.2RHet.g189.t1; prot=AAL49291/7227/RH02410p [Drosophila melanogaster]
2RHet	3111498	3112195	0.22	+	.	ID=DGIL_AUG30_p2.2RHet.g190.t1; prot=AAN34648/7227/truncated pol protein [Drosophila melanogaster]
2RHet	3124348	3134612	0.02	+	.	ID=DGIL_AUG30_p2.2RHet.g191.t1; est=BP560052,BP560053; prot=P10394/7227/Retrovirus-related Pol polyprotein from transposon 412 [Includes: Protease ;  Reverse transcriptase ;  Endonuclease]
2RHet	3182096	3182787	0.12	-	.	ID=DGIL_AUG30_p2.2RHet.g197.t1; est=EC059946,EC060041,EC197570,EC246639,EC260241,AI257701,CO189636,CO276475,CO276476,CO287263,CO306887; prot=ABI48304/7227/env protein [Drosophila melanogaster]
2RHet	3184608	3185416	0.01	+	.	ID=DGIL_AUG30_p2.2RHet.g199.t1; prot=Q9NBX4/7227/Probable RNA-directed DNA polymerase from transposon X-element (Reverse transcriptase)
2RHet	3216286	3217801	0.14	-	.	ID=DGIL_AUG30_p2.2RHet.g205.t1; est=EC244581; prot=AAN87269/7227/ORF [Drosophila melanogaster]
2RHet	3219824	3224541	0.01	-	.	ID=DGIL_AUG30_p2.2RHet.g206.t1; est=EC210235,BI609954; prot=CAA35586/7227/ORF1 for putative RNA binding protein [Drosophila melanogaster]
2RHet	3234752	3236681	0.22	+	.	ID=DGIL_AUG30_p2.2RHet.g208.t1; est=EC266319; prot=P21328/7227/RNA-directed DNA polymerase from mobile element jockey (Reverse transcriptase)
2RHet	3238382	3239380	0.09	+	.	ID=DGIL_AUG30_p2.2RHet.g209.t1; est=EC209354; prot=P21328/7227/RNA-directed DNA polymerase from mobile element jockey (Reverse transcriptase)
2RHet	3245253	3245991	0.6	-	.	ID=DGIL_AUG30_p2.2RHet.g214.t1; prot=AAN87269/7227/ORF [Drosophila melanogaster]
2RHet	3246040	3246671	0.34	-	.	ID=DGIL_AUG30_p2.2RHet.g215.t1; prot=AAN87269/7227/ORF [Drosophila melanogaster]
2RHet	3252993	3253771	0.14	-	.	ID=DGIL_AUG30_p2.2RHet.g221.t1; prot=AAN87269/7227/ORF [Drosophila melanogaster]
2RHet	3253829	3254671	0.55	-	.	ID=DGIL_AUG30_p2.2RHet.g222.t1; prot=AAN87269/7227/ORF [Drosophila melanogaster]
2RHet	3254719	3255351	0.32	-	.	ID=DGIL_AUG30_p2.2RHet.g223.t1; prot=AAN87269/7227/ORF [Drosophila melanogaster]
2RHet	3257563	3258571	0.12	-	.	ID=DGIL_AUG30_p2.2RHet.g226.t1; prot=AAN87269/7227/ORF [Drosophila melanogaster]
2RHet	3261293	3262011	0.17	-	.	ID=DGIL_AUG30_p2.2RHet.g229.t1; prot=ZP_00373877/307502/Zinc knuckle domain protein [Wolbachia endosymbiont of Drosophila ananassae]
2RHet	3274152	3277666	0.17	+	.	ID=DGIL_AUG30_p2.2RHet.g232.t1; prot=NP_001015146/7227/CG40207 CG40207-PA [Drosophila melanogaster]
3L	612130	612774	0.81	-	.	ID=DGIL_AUG30_p1.3L.g362.t1; est=BF491935; prot=AAM29328/7227/AT28783p [Drosophila melanogaster]
3L	797319	797898	0.76	+	.	ID=DGIL_AUG30_p1.3L.g518.t1; prot=AAL29117/7227/SD01284p [Drosophila melanogaster]
3L	1137078	1137618	0.38	-	.	ID=DGIL_AUG30_p1.3L.g725.t1; prot=XP_001559828/332648/predicted protein [Botryotinia fuckeliana B05.10]
3L	1195380	1196128	0.43	-	.	ID=DGIL_AUG30_p1.3L.g770.t1; prot=CAL85496/7240/LysX [Drosophila simulans]
3L	1257145	1258139	0.98	+	.	ID=DGIL_AUG30_p1.3L.g805.t1; prot=NP_612091/7227/CG9134 CG9134-PB, isoform B [Drosophila melanogaster]
3L	1479345	1480066	0.58	+	.	ID=DGIL_AUG30_p1.3L.g922.t1; est=AI514369,AI512439; prot=AAL25466/7227/LD40851p [Drosophila melanogaster]
3L	1996044	1998302	0.1	-	.	ID=DGIL_AUG30_p1.3L.g1160.t1; prot=NP_001097588/7227/CG6024 CG6024-PD, isoform D [Drosophila melanogaster]
3L	12891880	12892358	0.1	-	.	ID=DGIL_AUG30_p2.3L.g561.t1; prot=XP_001353494/7237/GA16692-PA [Drosophila pseudoobscura]
3L	13657252	13657632	0.18	-	.	ID=DGIL_AUG30_p2.3L.g986.t1; prot=NP_729923/7227/bruno-3 CG12478-PA, isoform A [Drosophila melanogaster]
3L	14375002	14376093	0.13	+	.	ID=DGIL_AUG30_p3.3L.g353.t1; est=CO192176,CO192176,CO297565,CO297565; prot=NP_001027123/7227/CG11714 CG11714-PA [Drosophila melanogaster]
3L	14489622	14491176	0.23	+	.	ID=DGIL_AUG30_p3.3L.g405.t1; est=BI564249,BI575912,BI584000,BI604621,BI605077,BI627802,BI628665,BI631511; prot=NP_001015120/7227/CG40239 CG40239-PA [Drosophila melanogaster]
3L	15888936	15889619	0.36	+	.	ID=DGIL_AUG30_p4.3L.g132.t1; est=BI616870; prot=AAV36845/7227/RH46982p [Drosophila melanogaster]
3L	16098859	16099973	0.12	+	.	ID=DGIL_AUG30_p4.3L.g222.t1; est=EC217793; prot=NP_001032483/7955/hypothetical protein LOC641417 [Danio rerio]
3L	16574710	16575134	0.3	+	.	ID=DGIL_AUG30_p4.3L.g477.t1; est=EC069024; prot=NP_608755/7227/CG34406 CG34406-PA [Drosophila melanogaster]
3L	16575200	16576234	0.4	+	.	ID=DGIL_AUG30_p4.3L.g478.t1; est=EC082404,EC254005,CO289529,CO345256; prot=XP_001115464/9544/PREDICTED: similar to zinc finger protein 83 (HPF1) [Macaca mulatta]
3L	17103449	17104513	0.23	+	.	ID=DGIL_AUG30_p4.3L.g705.t1; prot=XP_001717879/9606/PREDICTED: hypothetical protein [Homo sapiens]
3L	18036012	18036685	0.19	+	.	ID=DGIL_AUG30_p5.3L.g270.t1; est=EC088033,BE977515,BE977515,BE977515,EC246380,EC246886,EC255092,EC255092,EC256912,EC256912,EC256912,CO195480,CO195480,CO286624,CO302766,more; prot=NP_730325/7227/CG32192 CG32192-PB, isoform B [Drosophila melanogaster]
3L	18114045	18115121	0.58	-	.	ID=DGIL_AUG30_p5.3L.g300.t1; est=BE978060,CO181782,CO277473,AI944708,AI944708; prot=XP_001359776/7237/GA11813-PA [Drosophila pseudoobscura]
3L	18660465	18661129	0.26	+	.	ID=DGIL_AUG30_p5.3L.g565.t1; est=EL886815,EL886815,EL886876,EL886876,EL886945,EL887008,EL887067,EL887067,EL887129,EL887129,EL887190,EL887190,EL887247,EL887247; prot=ABN49370/7227/IP18228p [Drosophila melanogaster]
3L	19719526	19719984	0.08	-	.	ID=DGIL_AUG30_p6.3L.g101.t1; est=EY198845; prot=NP_524165/7227/Guanylyl cyclase at 76C CG8742-PA, isoform A [Drosophila melanogaster]
3L	19722795	19723929	0.05	+	.	ID=DGIL_AUG30_p6.3L.g103.t1; est=CO195272; prot=NP_649146/7227/CG14101 CG14101-PA [Drosophila melanogaster]
3L	19741590	19742684	0.18	-	.	ID=DGIL_AUG30_p6.3L.g113.t1; est=BI169173,BI171368,BI172947,BI235163,BI374204,BI375632,BI579707,CK131809; prot=NP_649145/7227/CG8743 CG8743-PA [Drosophila melanogaster]
3L	19744896	19747234	0.1	-	.	ID=DGIL_AUG30_p6.3L.g116.t1; est=EC051988,EC052007,EC056314,BI632814,AI533591; prot=NP_524165/7227/Guanylyl cyclase at 76C CG8742-PA, isoform A [Drosophila melanogaster]
3L	19747286	19747574	0.5	-	.	ID=DGIL_AUG30_p6.3L.g117.t1; prot=NP_524165/7227/Guanylyl cyclase at 76C CG8742-PA, isoform A [Drosophila melanogaster]
3L	19747636	19747894	0.51	-	.	ID=DGIL_AUG30_p6.3L.g118.t1; prot=NP_524165/7227/Guanylyl cyclase at 76C CG8742-PA, isoform A [Drosophila melanogaster]
3L	19747947	19748234	0.17	-	.	ID=DGIL_AUG30_p6.3L.g119.t1; prot=NP_524165/7227/Guanylyl cyclase at 76C CG8742-PA, isoform A [Drosophila melanogaster]
3L	19748336	19748854	0.39	-	.	ID=DGIL_AUG30_p6.3L.g120.t1; prot=NP_524165/7227/Guanylyl cyclase at 76C CG8742-PA, isoform A [Drosophila melanogaster]
3L	19748906	19749584	1	-	.	ID=DGIL_AUG30_p6.3L.g121.t1; est=AA952218,AA952218; prot=NP_524165/7227/Guanylyl cyclase at 76C CG8742-PA, isoform A [Drosophila melanogaster]
3L	21016987	21018175	0.04	-	.	ID=DGIL_AUG30_p6.3L.g724.t1; prot=XP_001353214/7237/GA22138-PA [Drosophila pseudoobscura]
3L	21036726	21037156	0.17	+	.	ID=DGIL_AUG30_p6.3L.g744.t1; prot=AAO39603/7227/GM06994p [Drosophila melanogaster]
3L	3185355	3186542	0.33	+	.	ID=DGIL_AUG30_p7.3L.g590.t1; est=EL886786,EL886786,EL886786,EL886786,EL886786,EL886852,EL886852,EL886852,EL886982,EL886982,EL887039,EL887039,EL887039,EL887104,EL887104,more; prot=ABN49343/7227/IP18038p [Drosophila melanogaster]
3L	3714054	3714845	0.1	+	.	ID=DGIL_AUG30_p7.3L.g891.t1; est=EC089790,CO289546,CO319291,CO333706; prot=XP_517933/9598/PREDICTED: similar to OCP-II protein isoform 11 [Pan troglodytes]
3L	21821819	21822693	0.07	+	.	ID=DGIL_AUG30_p8.3L.g189.t1; prot=NP_001089350/8355/hypothetical protein LOC734400 [Xenopus laevis]
3L	21887579	21888044	0.24	+	.	ID=DGIL_AUG30_p8.3L.g236.t1; prot=BAC86958/9606/unnamed protein product [Homo sapiens]
3L	21924399	21924777	0.29	+	.	ID=DGIL_AUG30_p8.3L.g260.t1; prot=AAO74699/7227/HL01663p [Drosophila melanogaster]
3L	22128145	22128856	0.01	-	.	ID=DGIL_AUG30_p8.3L.g371.t1; prot=AAF68026/7227/unknown [Drosophila melanogaster]
3L	22795385	22796563	0.13	-	.	ID=DGIL_AUG30_p8.3L.g874.t1; prot=F87991/6239/protein Y6B3B.8 [imported] - Caenorhabditis elegans
3L	23053883	23055002	0.13	-	.	ID=DGIL_AUG30_p8.3L.g980.t1; prot=NP_001036413/7227/CG41484 CG41484-PA [Drosophila melanogaster]
3L	23438913	23439338	0.07	+	.	ID=DGIL_AUG30_p8.3L.g1075.t1; prot=S20478/7227/hypothetical protein - fruit fly (Drosophila melanogaster) transposon pogoR11
3L	23444143	23444687	0.14	+	.	ID=DGIL_AUG30_p8.3L.g1080.t1; prot=AAB04627/7153/reverse transcriptase [Chironomus tentans]
3L	23447313	23448855	0.04	+	.	ID=DGIL_AUG30_p8.3L.g1082.t1; prot=CAB39733/7264/protease, reverse transcriptase, ribonuclease H, integrase [Drosophila buzzatii]
3L	23619547	23620342	0.1	-	.	ID=DGIL_AUG30_p9.3L.g72.t1; prot=NP_001036627/7227/CG40300 CG40300-PC, isoform C [Drosophila melanogaster]
3L	23743089	23744122	0.02	-	.	ID=DGIL_AUG30_p9.3L.g123.t1; prot=S18211/7244/hypothetical protein 2 - fruit fly (Drosophila virilis) retrotransposon Ulysses
3L	23769732	23770071	0.25	+	.	ID=DGIL_AUG30_p9.3L.g131.t1; prot=NP_001104143/7227/CG40798 CG40798-PA [Drosophila melanogaster]
3L	23770362	23771099	0.17	+	.	ID=DGIL_AUG30_p9.3L.g132.t1; prot=NP_001104089/7227/CG41573 CG41573-PA [Drosophila melanogaster]
3L	23777592	23780550	0.73	+	.	ID=DGIL_AUG30_p9.3L.g135.t1; est=EC207840,EC252725,CO290524,CO345505; prot=XP_001357574/7237/GA10913-PA [Drosophila pseudoobscura]
3L	23849348	23850451	0.03	-	.	ID=DGIL_AUG30_p9.3L.g162.t1; prot=CAA81643/7227/blastopia polyprotein [Drosophila melanogaster]
3L	23858953	23859241	0.02	-	.	ID=DGIL_AUG30_p9.3L.g166.t1; prot=AAK84933/7227/SD02026p [Drosophila melanogaster]
3L	23859304	23861041	0.01	-	.	ID=DGIL_AUG30_p9.3L.g167.t1; prot=CAA65152/7227/orf [Drosophila melanogaster]
3L	23862723	23863361	0.15	-	.	ID=DGIL_AUG30_p9.3L.g169.t1; prot=NP_001104403/7227/CG40001 CG40001-PB, isoform B [Drosophila melanogaster]
3L	23867952	23868394	0.05	+	.	ID=DGIL_AUG30_p9.3L.g172.t1; prot=P10403/7227/Retrovirus-related Env polyprotein from transposon gypsy
3L	23868978	23869431	0.19	-	.	ID=DGIL_AUG30_p9.3L.g173.t1; prot=P21328/7227/RNA-directed DNA polymerase from mobile element jockey (Reverse transcriptase)
3L	23888043	23888411	0.13	-	.	ID=DGIL_AUG30_p9.3L.g180.t1; prot=NP_001104351/7227/CG41253 CG41253-PA [Drosophila melanogaster]
3L	23890983	23892731	0.09	-	.	ID=DGIL_AUG30_p9.3L.g181.t1; est=BG639934; prot=Q9NBX4/7227/Probable RNA-directed DNA polymerase from transposon X-element (Reverse transcriptase)
3L	23894683	23895701	0.07	-	.	ID=DGIL_AUG30_p9.3L.g183.t1; prot=Q9NBX4/7227/Probable RNA-directed DNA polymerase from transposon X-element (Reverse transcriptase)
3L	23900632	23901163	0.13	+	.	ID=DGIL_AUG30_p9.3L.g187.t1; prot=NP_001015204/7227/CG41075 CG41075-PA [Drosophila melanogaster]
3L	23902743	23904671	0.04	-	.	ID=DGIL_AUG30_p9.3L.g189.t1; prot=AAB66824/7244/Tel1 [Drosophila virilis]
3L	23906933	23914981	0.01	-	.	ID=DGIL_AUG30_p9.3L.g191.t1; est=EL880200,EL880201,EL880289,EL880290,EL880388,EL880389,EL880479; prot=AAY84918/7227/IP10023p [Drosophila melanogaster]
3L	23915082	23918840	0.05	+	.	ID=DGIL_AUG30_p9.3L.g192.t1; est=EC201049,EC255411,CO328282; prot=Q9NBX4/7227/Probable RNA-directed DNA polymerase from transposon X-element (Reverse transcriptase)
3L	23947476	23951991	0.01	+	.	ID=DGIL_AUG30_p9.3L.g199.t1; prot=Q9NBX4/7227/Probable RNA-directed DNA polymerase from transposon X-element (Reverse transcriptase)
3L	23953906	23955784	0.11	+	.	ID=DGIL_AUG30_p9.3L.g200.t1; prot=Q9NBX5/7227/Nucleic-acid-binding protein from transposon X-element
3L	23963575	23965815	0.03	-	.	ID=DGIL_AUG30_p9.3L.g204.t1; prot=CAB99192/7227/endonuclease/reverse transcriptase [Drosophila melanogaster]
3L	23966796	23967343	0.06	+	.	ID=DGIL_AUG30_p9.3L.g205.t1; prot=AAM51136/7227/SD26211p [Drosophila melanogaster]
3L	23987356	23989222	0.08	+	.	ID=DGIL_AUG30_p9.3L.g207.t1; prot=AAA28508/7227/reverse transcriptase (put.);  putative
3L	23989230	23992375	0.02	-	.	ID=DGIL_AUG30_p9.3L.g208.t1; prot=CAB99192/7227/endonuclease/reverse transcriptase [Drosophila melanogaster]
3L	24030646	24031476	0.04	+	.	ID=DGIL_AUG30_p9.3L.g214.t1; prot=AAB66824/7244/Tel1 [Drosophila virilis]
3L	24031557	24033145	0.03	-	.	ID=DGIL_AUG30_p9.3L.g215.t1; prot=XP_001599032/7425/PREDICTED: similar to BEL12_AG transposon polyprotein [Nasonia vitripennis]
3L	24039306	24043791	0.07	+	.	ID=DGIL_AUG30_p9.3L.g217.t1; prot=XP_001344104/7955/PREDICTED: similar to pol polyprotein [Danio rerio]
3L	24048853	24053165	0.01	-	.	ID=DGIL_AUG30_p9.3L.g220.t1; est=BG632856; prot=BAA57030/7240/unnamed protein product [Drosophila simulans]
3L	24079497	24080445	0.04	-	.	ID=DGIL_AUG30_p9.3L.g224.t1; prot=ZP_00373813/307502/reverse transcriptase polyprotein [Wolbachia endosymbiont of Drosophila ananassae]
3L	24081486	24081843	0.5	+	.	ID=DGIL_AUG30_p9.3L.g226.t1; prot=AAK68401/6239/Hypothetical protein W07E6.6 [Caenorhabditis elegans]
3L	24081867	24088125	0.04	-	.	ID=DGIL_AUG30_p9.3L.g227.t1; prot=ZP_00373907/307502/envelope protein [Wolbachia endosymbiont of Drosophila ananassae]
3L	24097483	24099815	0.02	-	.	ID=DGIL_AUG30_p9.3L.g228.t1; prot=XP_001604276/7425/PREDICTED: similar to pol polyprotein [Nasonia vitripennis]
3L	24109151	24113519	0.06	-	.	ID=DGIL_AUG30_p9.3L.g229.t1; prot=CAJ14165/7165/BEL12_AG transposon polyprotein [Anopheles gambiae]
3L	24117910	24120868	0.06	+	.	ID=DGIL_AUG30_p9.3L.g231.t1; prot=Q9NBX4/7227/Probable RNA-directed DNA polymerase from transposon X-element (Reverse transcriptase)
3L	24124583	24131269	0.03	-	.	ID=DGIL_AUG30_p9.3L.g232.t1; prot=CAB99192/7227/endonuclease/reverse transcriptase [Drosophila melanogaster]
3L	24143070	24146276	0.07	+	.	ID=DGIL_AUG30_p9.3L.g234.t1; prot=XP_001599032/7425/PREDICTED: similar to BEL12_AG transposon polyprotein [Nasonia vitripennis]
3L	24156341	24157619	0.09	-	.	ID=DGIL_AUG30_p9.3L.g237.t1; prot=P16425/7227/Putative 115 kDa protein in type-1 retrotransposable element R1DM (Putative 115 kDa protein in type I retrotransposable element R1DM) (ORF 2)
3L	24204940	24205433	0.1	+	.	ID=DGIL_AUG30_p9.3L.g244.t1; prot=AAB66824/7244/Tel1 [Drosophila virilis]
3L	24221840	24222643	0.07	+	.	ID=DGIL_AUG30_p9.3L.g247.t1; prot=AAC28743/7213/pol-like protein [Ceratitis capitata]
3L	24223760	24224187	0.43	+	.	ID=DGIL_AUG30_p9.3L.g248.t1; prot=ZP_00373812/307502/putative retrovirus-like env glycoprotein [Wolbachia endosymbiont of Drosophila ananassae]
3L	24225430	24225794	0.31	+	.	ID=DGIL_AUG30_p9.3L.g250.t1; prot=P21328/7227/RNA-directed DNA polymerase from mobile element jockey (Reverse transcriptase)
3L	24239705	24241179	0.04	-	.	ID=DGIL_AUG30_p9.3L.g254.t1; est=AI257730; prot=NP_001015219/7227/CG40346 CG40346-PA [Drosophila melanogaster]
3L	24297077	24303227	0.01	-	.	ID=DGIL_AUG30_p9.3L.g269.t1; prot=P04146/7227/Copia protein (Gag-int-pol protein) [Contains: Copia VLP protein;  Copia protease ]
3L	24322518	24322936	0.11	+	.	ID=DGIL_AUG30_p9.3L.g273.t1; prot=NP_995746/7227/CG33347 CG33347-PA [Drosophila melanogaster]
3L	24334323	24340307	0.03	-	.	ID=DGIL_AUG30_p9.3L.g275.t1; prot=AAL57609/7227/reverse transcriptase [Drosophila melanogaster]
3L	24346749	24349217	0.06	-	.	ID=DGIL_AUG30_p9.3L.g279.t1; est=EC248980,AA264125,AA264125,CO299282,CO303379; prot=ZP_00373812/307502/putative retrovirus-like env glycoprotein [Wolbachia endosymbiont of Drosophila ananassae]
3L	24349548	24351027	0.16	-	.	ID=DGIL_AUG30_p9.3L.g280.t1; prot=NP_001015297/7227/CG40124 CG40124-PA [Drosophila melanogaster]
3L	24361196	24368227	0.02	-	.	ID=DGIL_AUG30_p9.3L.g285.t1; prot=CAA35586/7227/ORF1 for putative RNA binding protein [Drosophila melanogaster]
3L	24373529	24385907	0.05	-	.	ID=DGIL_AUG30_p9.3L.g286.t1; est=BI615819,BI622326; prot=CAA65152/7227/orf [Drosophila melanogaster]
3L	24389968	24391297	0.1	-	.	ID=DGIL_AUG30_p9.3L.g288.t1; est=BI567218,BI567830,BI576406,BI583391,BI587826,BI589166,BI593468,BI614019,BI614593,BI615689,BI616777,BI617744,BI630551; prot=AAK77263/7227/GH03753p [Drosophila melanogaster]
3L	24391432	24391917	0.08	-	.	ID=DGIL_AUG30_p9.3L.g289.t1; prot=Q95SX7/7227/Probable RNA-directed DNA polymerase from transposon BS (Reverse transcriptase)
3L	24397808	24399135	0.09	+	.	ID=DGIL_AUG30_p9.3L.g293.t1; est=BI587967; prot=AAK77263/7227/GH03753p [Drosophila melanogaster]
3L	24415138	24418454	0.03	+	.	ID=DGIL_AUG30_p9.3L.g297.t1; prot=CAB99191/7227/gag-like protein [Drosophila melanogaster]
3L	24418459	24427837	0.02	-	.	ID=DGIL_AUG30_p9.3L.g298.t1; prot=AAK52055/7227/RNA-directed DNA polymerase [Drosophila melanogaster]
3L	24430037	24431647	0.01	-	.	ID=DGIL_AUG30_p9.3L.g300.t1; prot=AAL49362/7227/RH47344p [Drosophila melanogaster]
3L	24433562	24436361	0.18	+	.	ID=DGIL_AUG30_p9.3L.g301.t1; est=EC203379,BI636193; prot=AAM51136/7227/SD26211p [Drosophila melanogaster]
3L	24436715	24438191	0.05	-	.	ID=DGIL_AUG30_p9.3L.g302.t1; prot=NP_995746/7227/CG33347 CG33347-PA [Drosophila melanogaster]
3L	24441572	24445266	0.24	+	.	ID=DGIL_AUG30_p9.3L.g303.t1; est=AA141019; prot=S00954/7227/pol polyprotein - fruit fly (Drosophila melanogaster) transposon 1731
3L	24454873	24456201	0.08	-	.	ID=DGIL_AUG30_p9.3L.g305.t1; prot=ABV82402/7227/RH22643p [Drosophila melanogaster]
3L	24458282	24462396	0.09	+	.	ID=DGIL_AUG30_p9.3L.g306.t1; est=EC249222; prot=AAC82604/7227/Prgag-pol [Drosophila melanogaster]
3L	24462672	24465735	0.32	+	.	ID=DGIL_AUG30_p9.3L.g307.t1; prot=ABI48304/7227/env protein [Drosophila melanogaster]
3L	24467262	24475746	0.01	+	.	ID=DGIL_AUG30_p9.3L.g308.t1; prot=AAK52055/7227/RNA-directed DNA polymerase [Drosophila melanogaster]
3L	24475752	24479081	0.01	-	.	ID=DGIL_AUG30_p9.3L.g309.t1; prot=CAB99191/7227/gag-like protein [Drosophila melanogaster]
3L	24495843	24496441	0.05	-	.	ID=DGIL_AUG30_p9.3L.g315.t1; prot=AAM50748/7227/HL08112p [Drosophila melanogaster]
3L	24507208	24508101	0.06	-	.	ID=DGIL_AUG30_p9.3L.g317.t1; prot=P04146/7227/Copia protein (Gag-int-pol protein) [Contains: Copia VLP protein;  Copia protease ]
3L	24510642	24511807	0.08	+	.	ID=DGIL_AUG30_p9.3L.g319.t1; prot=AAK77263/7227/GH03753p [Drosophila melanogaster]
3L	4449737	4451662	0.02	+	.	ID=DGIL_AUG30_p10.3L.g245.t1; prot=Q9NBX5/7227/Nucleic-acid-binding protein from transposon X-element
3L	4634880	4635548	0.14	-	.	ID=DGIL_AUG30_p10.3L.g305.t1; prot=AAT94414/7227/RH69543p [Drosophila melanogaster]
3L	6121796	6122414	0.15	-	.	ID=DGIL_AUG30_p11.3L.g168.t1; est=EC059306,EC196466,CO185608,CO261882; prot=CAA87654/7227/MBN [Drosophila melanogaster]
3L	6337513	6338317	0.06	-	.	ID=DGIL_AUG30_p11.3L.g289.t1; est=BI563371,BI566000,BI575042; prot=AAN71565/7227/RH33996p [Drosophila melanogaster]
3L	8581999	8582448	0.31	+	.	ID=DGIL_AUG30_p12.3L.g356.t1; prot=AAX33584/7227/GH14495p [Drosophila melanogaster]
3L	8821318	8822548	0.42	+	.	ID=DGIL_AUG30_p12.3L.g492.t1; prot=BAB60703/7227/Dally [Drosophila melanogaster]
3L	8934821	8935167	0.27	-	.	ID=DGIL_AUG30_p12.3L.g572.t1; est=EC260392,ES689339,CK131826,CO328446,CO341106,AW941086,AI946174; prot=AAL25391/7227/GH28038p [Drosophila melanogaster]
3L	9427618	9428536	0.75	-	.	ID=DGIL_AUG30_p12.3L.g822.t1; est=BI632250,BI632250,BI632250; prot=AAM52044/7227/SD25955p [Drosophila melanogaster]
3L	9799875	9799948	0.45	-	.	ID=DGIL_AUG30_p12.3L.g986.t1; prot=NP_729555/7227/CG32052 CG32052-PA [Drosophila melanogaster]
3L	10622447	10623843	0.17	-	.	ID=DGIL_AUG30_p13.3L.g494.t1; est=CO183787,CO183787,CO183787,CO183787,CO193430,CO193430,CO193430,CO193430,CO193904,CO193904,CO193904,CO193904; prot=XP_001353778/7237/GA12790-PA [Drosophila pseudoobscura]
3L	10853678	10854065	0.25	+	.	ID=DGIL_AUG30_p13.3L.g627.t1; prot=AAL28584/7227/HL07357p [Drosophila melanogaster]
3L	11127913	11128571	0.7	+	.	ID=DGIL_AUG30_p13.3L.g772.t1; prot=NP_729676/7227/CG32074 CG32074-PA [Drosophila melanogaster]
3L	11483918	11484346	0.24	-	.	ID=DGIL_AUG30_p13.3L.g963.t1; prot=XP_678650/5823/hypothetical protein PB107159.00.0 [Plasmodium berghei strain ANKA]
3L	11644617	11646001	0.05	+	.	ID=DGIL_AUG30_p13.3L.g1029.t1; prot=AAM50319/7227/SD12357p [Drosophila melanogaster]
3LHet	14087	14425	0.27	-	.	ID=DGIL_AUG30_p1.3LHet.g4.t1; prot=NP_001036405/7227/CG41121 CG41121-PA, isoform A [Drosophila melanogaster]
3LHet	23396	34030	0.01	+	.	ID=DGIL_AUG30_p1.3LHet.g6.t1; prot=CAA09069/7227/polyprotein [Drosophila melanogaster]
3LHet	39267	40855	0.25	-	.	ID=DGIL_AUG30_p1.3LHet.g9.t1; prot=ZP_00373813/307502/reverse transcriptase polyprotein [Wolbachia endosymbiont of Drosophila ananassae]
3LHet	44319	53245	0.02	-	.	ID=DGIL_AUG30_p1.3LHet.g10.t1; prot=ZP_00374090/307502/SD27140p [Wolbachia endosymbiont of Drosophila ananassae]
3LHet	67645	73685	0.02	-	.	ID=DGIL_AUG30_p1.3LHet.g11.t1; est=AI531702; prot=AAN87266/7227/ORF1 [Drosophila melanogaster]
3LHet	89426	100272	0.06	+	.	ID=DGIL_AUG30_p1.3LHet.g12.t1; prot=CAA08806/7227/Gag protein [Drosophila melanogaster]
3LHet	110096	110510	0.35	+	.	ID=DGIL_AUG30_p1.3LHet.g14.t1; prot=NP_001104128/7227/CG41584 CG41584-PA [Drosophila melanogaster]
3LHet	110586	111378	0.09	+	.	ID=DGIL_AUG30_p1.3LHet.g15.t1; prot=AAM90230/11723/gag protein [Simian immunodeficiency virus]
3LHet	113107	126015	0.01	-	.	ID=DGIL_AUG30_p1.3LHet.g16.t1; prot=CAB99192/7227/endonuclease/reverse transcriptase [Drosophila melanogaster]
3LHet	149484	154815	0.01	-	.	ID=DGIL_AUG30_p1.3LHet.g18.t1; prot=ABY50130/7240/Gag-like protein [Drosophila simulans]
3LHet	185105	189331	0.06	+	.	ID=DGIL_AUG30_p1.3LHet.g20.t1; prot=AAC28742/7213/gag-like protein [Ceratitis capitata]
3LHet	189475	189889	0.18	+	.	ID=DGIL_AUG30_p1.3LHet.g21.t1; prot=AAC28744/7213/env-like protein [Ceratitis capitata]
3LHet	189945	190277	0.77	+	.	ID=DGIL_AUG30_p1.3LHet.g22.t1; prot=AAC28744/7213/env-like protein [Ceratitis capitata]
3LHet	265145	265559	0.11	+	.	ID=DGIL_AUG30_p1.3LHet.g32.t1; prot=AAL49291/7227/RH02410p [Drosophila melanogaster]
3LHet	265564	268884	0.21	-	.	ID=DGIL_AUG30_p1.3LHet.g33.t1; prot=CAA51084/7241/unnamed protein product [Drosophila subobscura]
3LHet	268946	269764	0.12	-	.	ID=DGIL_AUG30_p1.3LHet.g34.t1; prot=AAK52057/7227/gag protein [Drosophila melanogaster]
3LHet	291388	292164	0.17	-	.	ID=DGIL_AUG30_p1.3LHet.g36.t1; prot=NP_001104034/7227/CG41245 CG41245-PA [Drosophila melanogaster]
3LHet	336690	342110	0.04	-	.	ID=DGIL_AUG30_p1.3LHet.g50.t1; prot=AAN34650/7227/gag protein [Drosophila melanogaster]
3LHet	361271	361987	0.25	+	.	ID=DGIL_AUG30_p1.3LHet.g55.t1; prot=AAK77263/7227/GH03753p [Drosophila melanogaster]
3LHet	362131	362825	0.19	+	.	ID=DGIL_AUG30_p1.3LHet.g56.t1; prot=AAA28508/7227/reverse transcriptase (put.);  putative
3LHet	372402	373400	0.03	-	.	ID=DGIL_AUG30_p1.3LHet.g58.t1; prot=AAB66824/7244/Tel1 [Drosophila virilis]
3LHet	374151	375725	0.28	+	.	ID=DGIL_AUG30_p1.3LHet.g59.t1; prot=XP_001865366/7176/zinc knuckle domain protein [Culex pipiens quinquefasciatus]
3LHet	376911	378525	0.28	+	.	ID=DGIL_AUG30_p1.3LHet.g61.t1; prot=AAB66825/7244/Tel1 [Drosophila virilis]
3LHet	385311	387510	0.08	-	.	ID=DGIL_AUG30_p1.3LHet.g63.t1; prot=AAN34649/7227/gag protein [Drosophila melanogaster]
3LHet	391323	392290	0.62	-	.	ID=DGIL_AUG30_p1.3LHet.g64.t1; prot=AAN34649/7227/gag protein [Drosophila melanogaster]
3LHet	395062	396870	0.26	-	.	ID=DGIL_AUG30_p1.3LHet.g67.t1; prot=AAA28508/7227/reverse transcriptase (put.);  putative
3LHet	397932	401760	0.04	-	.	ID=DGIL_AUG30_p1.3LHet.g68.t1; prot=CAB99192/7227/endonuclease/reverse transcriptase [Drosophila melanogaster]
3LHet	402364	403330	0.38	-	.	ID=DGIL_AUG30_p1.3LHet.g69.t1; prot=AAN34649/7227/gag protein [Drosophila melanogaster]
3LHet	421704	422700	0.07	-	.	ID=DGIL_AUG30_p1.3LHet.g75.t1; prot=S18211/7244/hypothetical protein 2 - fruit fly (Drosophila virilis) retrotransposon Ulysses
3LHet	426971	427626	0.21	+	.	ID=DGIL_AUG30_p1.3LHet.g77.t1; prot=AAT47767/7227/RE14563p [Drosophila melanogaster]
3LHet	427711	428466	0.37	+	.	ID=DGIL_AUG30_p1.3LHet.g78.t1; prot=AAS13459/7240/putative reverse transcriptase [Drosophila simulans]
3LHet	432582	434810	0.02	-	.	ID=DGIL_AUG30_p1.3LHet.g81.t1; prot=AAB66824/7244/Tel1 [Drosophila virilis]
3LHet	456341	457190	0.03	-	.	ID=DGIL_AUG30_p1.3LHet.g82.t1; est=EC068014,EC251329,CO333765; prot=P21329/7221/RNA-directed DNA polymerase from mobile element jockey (Reverse transcriptase)
3LHet	462214	464620	0.02	-	.	ID=DGIL_AUG30_p1.3LHet.g84.t1; prot=AAL29119/7227/SD01935p [Drosophila melanogaster]
3LHet	471991	472275	0.34	+	.	ID=DGIL_AUG30_p1.3LHet.g86.t1; prot=AAL90081/7227/AT16518p [Drosophila melanogaster]
3LHet	472331	472665	0.33	+	.	ID=DGIL_AUG30_p1.3LHet.g87.t1; prot=ZP_00373430/307502/Pol protein [Wolbachia endosymbiont of Drosophila ananassae]
3LHet	482477	486510	0.09	-	.	ID=DGIL_AUG30_p1.3LHet.g89.t1; prot=AAF75698/38838/reverse transcriptase [Drosophila testacea]
3LHet	487532	488130	0.13	-	.	ID=DGIL_AUG30_p1.3LHet.g90.t1; prot=P16425/7227/Putative 115 kDa protein in type-1 retrotransposable element R1DM (Putative 115 kDa protein in type I retrotransposable element R1DM) (ORF 2)
3LHet	509095	515199	0.16	+	.	ID=DGIL_AUG30_p1.3LHet.g95.t1; prot=AAL25501/7227/SD04061p [Drosophila melanogaster]
3LHet	538256	541844	0.03	-	.	ID=DGIL_AUG30_p1.3LHet.g97.t1; est=BI568901; prot=CAD32253/7227/gag-pol polyprotein precursor;  hypothetical protein [Drosophila melanogaster]
3LHet	552795	553614	0.05	+	.	ID=DGIL_AUG30_p1.3LHet.g99.t1; prot=ZP_00373907/307502/envelope protein [Wolbachia endosymbiont of Drosophila ananassae]
3LHet	553616	559114	0.02	-	.	ID=DGIL_AUG30_p1.3LHet.g100.t1; prot=BAD01590/7240/hypothetical protein [Drosophila simulans]
3LHet	569751	572304	0.06	-	.	ID=DGIL_AUG30_p1.3LHet.g105.t1; est=EC265400,BI633722,AA141928; prot=CAA65152/7227/orf [Drosophila melanogaster]
3LHet	614869	620224	0.01	-	.	ID=DGIL_AUG30_p1.3LHet.g111.t1; est=EC079223,BI569186,BI570441,BI581776,BI589982,BI590254,BI590628,AA140910,AI260144,AI388311,CO332040; prot=P16425/7227/Putative 115 kDa protein in type-1 retrotransposable element R1DM (Putative 115 kDa protein in type I retrotransposable element R1DM) (ORF 2)
3LHet	621675	628839	0.04	+	.	ID=DGIL_AUG30_p1.3LHet.g112.t1; prot=AAL25501/7227/SD04061p [Drosophila melanogaster]
3LHet	635636	636844	0.19	-	.	ID=DGIL_AUG30_p1.3LHet.g117.t1; prot=ABD72267/7264/pol polyprotein [Drosophila buzzatii]
3LHet	649865	654044	0.03	+	.	ID=DGIL_AUG30_p1.3LHet.g120.t1; prot=NP_001104129/7227/CG41586 CG41586-PA [Drosophila melanogaster]
3LHet	678110	685534	0.01	-	.	ID=DGIL_AUG30_p1.3LHet.g124.t1; prot=CAD32253/7227/gag-pol polyprotein precursor;  hypothetical protein [Drosophila melanogaster]
3LHet	692865	693626	0.23	+	.	ID=DGIL_AUG30_p1.3LHet.g130.t1; prot=CAA27371/7227/unnamed protein product [Drosophila melanogaster]
3LHet	696195	698619	0.15	+	.	ID=DGIL_AUG30_p1.3LHet.g132.t1; est=BI621908; prot=XP_001188792/7668/PREDICTED: similar to transposase [Strongylocentrotus purpuratus]
3LHet	698675	699159	0.51	+	.	ID=DGIL_AUG30_p1.3LHet.g133.t1; prot=XP_001201290/7668/PREDICTED: similar to retrotransposon protein, putative, Ty3-gypsy subclass [Strongylocentrotus purpuratus]
3LHet	699225	699760	0.6	+	.	ID=DGIL_AUG30_p1.3LHet.g134.t1; prot=NP_001104385/7227/CG41278 CG41278-PA [Drosophila melanogaster]
3LHet	699815	700314	0.17	+	.	ID=DGIL_AUG30_p1.3LHet.g135.t1; prot=ZP_00373813/307502/reverse transcriptase polyprotein [Wolbachia endosymbiont of Drosophila ananassae]
3LHet	702086	704904	0.15	-	.	ID=DGIL_AUG30_p1.3LHet.g138.t1; prot=AAM29329/7227/AT28829p [Drosophila melanogaster]
3LHet	705635	706821	0.17	+	.	ID=DGIL_AUG30_p1.3LHet.g140.t1; prot=XP_001201290/7668/PREDICTED: similar to retrotransposon protein, putative, Ty3-gypsy subclass [Strongylocentrotus purpuratus]
3LHet	706875	707375	0.12	+	.	ID=DGIL_AUG30_p1.3LHet.g141.t1; prot=ZP_00373813/307502/reverse transcriptase polyprotein [Wolbachia endosymbiont of Drosophila ananassae]
3LHet	710793	715804	0.01	-	.	ID=DGIL_AUG30_p1.3LHet.g144.t1; prot=NP_001104032/7227/CG41251 CG41251-PA [Drosophila melanogaster]
3LHet	715965	716440	0.12	+	.	ID=DGIL_AUG30_p1.3LHet.g145.t1; prot=ZP_00373812/307502/putative retrovirus-like env glycoprotein [Wolbachia endosymbiont of Drosophila ananassae]
3LHet	719225	719749	0.12	+	.	ID=DGIL_AUG30_p1.3LHet.g147.t1; prot=AAL90009/7227/AT07338p [Drosophila melanogaster]
3LHet	719885	720979	0.14	+	.	ID=DGIL_AUG30_p1.3LHet.g148.t1; prot=NP_001104160/7227/CG40924 CG40924-PA [Drosophila melanogaster]
3LHet	721035	721729	0.32	+	.	ID=DGIL_AUG30_p1.3LHet.g149.t1; prot=ABD72267/7264/pol polyprotein [Drosophila buzzatii]
3LHet	721785	722169	0.15	+	.	ID=DGIL_AUG30_p1.3LHet.g150.t1; prot=CAA73721/7227/indora [Drosophila melanogaster]
3LHet	730258	738024	0.01	-	.	ID=DGIL_AUG30_p1.3LHet.g154.t1; prot=CAD32253/7227/gag-pol polyprotein precursor;  hypothetical protein [Drosophila melanogaster]
3LHet	753175	756238	0.07	+	.	ID=DGIL_AUG30_p1.3LHet.g156.t1; prot=AAK52057/7227/gag protein [Drosophila melanogaster]
3LHet	762516	763464	0.05	-	.	ID=DGIL_AUG30_p1.3LHet.g158.t1; prot=AAL90081/7227/AT16518p [Drosophila melanogaster]
3LHet	764622	771284	0.18	-	.	ID=DGIL_AUG30_p1.3LHet.g159.t1; prot=Q9NBX4/7227/Probable RNA-directed DNA polymerase from transposon X-element (Reverse transcriptase)
3LHet	772517	777134	0.08	-	.	ID=DGIL_AUG30_p1.3LHet.g161.t1; est=BI357218; prot=Q95SX7/7227/Probable RNA-directed DNA polymerase from transposon BS (Reverse transcriptase)
3LHet	777225	777914	0.05	-	.	ID=DGIL_AUG30_p1.3LHet.g162.t1; prot=AAC28744/7213/env-like protein [Ceratitis capitata]
3LHet	808559	817384	0.04	-	.	ID=DGIL_AUG30_p1.3LHet.g165.t1; prot=CAN79779/29760/hypothetical protein [Vitis vinifera]
3LHet	848884	852228	0.01	+	.	ID=DGIL_AUG30_p1.3LHet.g171.t1; prot=CAA09069/7227/polyprotein [Drosophila melanogaster]
3LHet	854524	864234	0.01	+	.	ID=DGIL_AUG30_p1.3LHet.g172.t1; est=BG639930,BI632579,AI534029; prot=S00954/7227/pol polyprotein - fruit fly (Drosophila melanogaster) transposon 1731
3LHet	870324	871378	0.08	+	.	ID=DGIL_AUG30_p1.3LHet.g174.t1; prot=CAJ14165/7165/BEL12_AG transposon polyprotein [Anopheles gambiae]
3LHet	871385	872093	0.14	-	.	ID=DGIL_AUG30_p1.3LHet.g175.t1; prot=NP_001015306/7227/CG40116 CG40116-PA [Drosophila melanogaster]
3LHet	872754	873238	0.09	+	.	ID=DGIL_AUG30_p1.3LHet.g176.t1; prot=XP_966845/7070/PREDICTED: similar to Y48G1BM.4 [Tribolium castaneum]
3LHet	891370	893113	0.04	-	.	ID=DGIL_AUG30_p1.3LHet.g182.t1; est=BG639955; prot=AAK52057/7227/gag protein [Drosophila melanogaster]
3LHet	896664	899067	0.13	+	.	ID=DGIL_AUG30_p1.3LHet.g185.t1; prot=NP_001104146/7227/CG40950 CG40950-PA [Drosophila melanogaster]
3LHet	899564	900728	0.45	+	.	ID=DGIL_AUG30_p1.3LHet.g186.t1; prot=ZP_00373731/307502/gag protein [Wolbachia endosymbiont of Drosophila ananassae]
3LHet	901264	903096	0.17	+	.	ID=DGIL_AUG30_p1.3LHet.g187.t1; prot=ZP_00373813/307502/reverse transcriptase polyprotein [Wolbachia endosymbiont of Drosophila ananassae]
3LHet	903144	904325	0.35	+	.	ID=DGIL_AUG30_p1.3LHet.g188.t1; prot=ZP_00373813/307502/reverse transcriptase polyprotein [Wolbachia endosymbiont of Drosophila ananassae]
3LHet	904984	906598	0.14	+	.	ID=DGIL_AUG30_p1.3LHet.g189.t1; prot=XP_001339559/7955/PREDICTED: similar to protease, reverse transcriptase, ribonuclease H, integrase [Danio rerio]
3LHet	906654	907528	0.18	+	.	ID=DGIL_AUG30_p1.3LHet.g190.t1; prot=AAK84933/7227/SD02026p [Drosophila melanogaster]
3LHet	915274	915713	0.05	-	.	ID=DGIL_AUG30_p1.3LHet.g194.t1; est=EL873337; prot=NP_651929/7227/CG11260 CG11260-PA [Drosophila melanogaster]
3LHet	915886	917143	0.07	-	.	ID=DGIL_AUG30_p1.3LHet.g195.t1; prot=XP_001601069/7425/PREDICTED: similar to blastopia polyprotein [Nasonia vitripennis]
3LHet	920135	920693	0.36	-	.	ID=DGIL_AUG30_p1.3LHet.g198.t1; prot=AAA28508/7227/reverse transcriptase (put.);  putative
3LHet	932305	933663	0.13	-	.	ID=DGIL_AUG30_p1.3LHet.g206.t1; prot=AAC28744/7213/env-like protein [Ceratitis capitata]
3LHet	946160	947903	0.35	-	.	ID=DGIL_AUG30_p1.3LHet.g213.t1; prot=CAA32198/7227/polyprotein [Drosophila melanogaster]
3LHet	955964	969459	0.01	+	.	ID=DGIL_AUG30_p1.3LHet.g216.t1; est=BI566563,BI567349,BI567797,BI570028,BI574613,BI583388,BI585786,BI587281; prot=NP_001104441/7227/CG41392 CG41392-PA [Drosophila melanogaster]
3LHet	969855	974433	0.24	-	.	ID=DGIL_AUG30_p1.3LHet.g217.t1; prot=ABQ84943/7227/pol protein [Drosophila melanogaster]
3LHet	974534	975848	0.58	+	.	ID=DGIL_AUG30_p1.3LHet.g218.t1; prot=NP_001104441/7227/CG41392 CG41392-PA [Drosophila melanogaster]
3LHet	975892	977143	0.19	-	.	ID=DGIL_AUG30_p1.3LHet.g219.t1; est=EC252378,CO343120; prot=ZP_00373813/307502/reverse transcriptase polyprotein [Wolbachia endosymbiont of Drosophila ananassae]
3LHet	977191	978063	0.37	-	.	ID=DGIL_AUG30_p1.3LHet.g220.t1; est=EC194765; prot=ZP_00373813/307502/reverse transcriptase polyprotein [Wolbachia endosymbiont of Drosophila ananassae]
3LHet	978113	979153	0.52	-	.	ID=DGIL_AUG30_p1.3LHet.g221.t1; prot=AAK01366/7227/pol polyprotein [Drosophila melanogaster]
3LHet	979578	980693	0.23	-	.	ID=DGIL_AUG30_p1.3LHet.g222.t1; prot=NP_001015297/7227/CG40124 CG40124-PA [Drosophila melanogaster]
3LHet	982771	984283	0.04	-	.	ID=DGIL_AUG30_p1.3LHet.g223.t1; prot=AAL16060/7227/RNA-directed DNA polymerase [Drosophila melanogaster]
3LHet	994055	994823	0.29	-	.	ID=DGIL_AUG30_p1.3LHet.g224.t1; prot=XP_969432/7070/PREDICTED: similar to Copia protein (Gag-int-pol protein) [Tribolium castaneum]
3LHet	994885	995263	0.48	-	.	ID=DGIL_AUG30_p1.3LHet.g225.t1; prot=ABF96216/39947/retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa (japonica cultivar-group)]
3LHet	995641	996643	0.36	-	.	ID=DGIL_AUG30_p1.3LHet.g226.t1; prot=S00954/7227/pol polyprotein - fruit fly (Drosophila melanogaster) transposon 1731
3LHet	996695	997163	0.66	-	.	ID=DGIL_AUG30_p1.3LHet.g227.t1; prot=XP_969432/7070/PREDICTED: similar to Copia protein (Gag-int-pol protein) [Tribolium castaneum]
3LHet	997215	997933	0.71	-	.	ID=DGIL_AUG30_p1.3LHet.g228.t1; prot=XP_969432/7070/PREDICTED: similar to Copia protein (Gag-int-pol protein) [Tribolium castaneum]
3LHet	1010734	1015958	0.01	+	.	ID=DGIL_AUG30_p1.3LHet.g234.t1; prot=CAA35586/7227/ORF1 for putative RNA binding protein [Drosophila melanogaster]
3LHet	1030596	1033466	0.01	-	.	ID=DGIL_AUG30_p1.3LHet.g236.t1; prot=AAK52056/7227/envelope protein [Drosophila melanogaster]
3LHet	1033745	1034466	0.06	-	.	ID=DGIL_AUG30_p1.3LHet.g237.t1; prot=AAO67558/7244/Gag protein [Drosophila virilis]
3LHet	1035337	1035701	0.26	+	.	ID=DGIL_AUG30_p1.3LHet.g238.t1; prot=CAA32198/7227/polyprotein [Drosophila melanogaster]
3LHet	1037798	1042586	0.1	-	.	ID=DGIL_AUG30_p1.3LHet.g241.t1; prot=CAB99192/7227/endonuclease/reverse transcriptase [Drosophila melanogaster]
3LHet	1042688	1052336	0.01	-	.	ID=DGIL_AUG30_p1.3LHet.g242.t1; prot=CAB99192/7227/endonuclease/reverse transcriptase [Drosophila melanogaster]
3LHet	1106017	1107045	0.26	+	.	ID=DGIL_AUG30_p1.3LHet.g249.t1; prot=ZP_00373731/307502/gag protein [Wolbachia endosymbiont of Drosophila ananassae]
3LHet	1107467	1107907	0.25	+	.	ID=DGIL_AUG30_p1.3LHet.g251.t1; prot=CAA27371/7227/unnamed protein product [Drosophila melanogaster]
3LHet	1107918	1108486	0.32	-	.	ID=DGIL_AUG30_p1.3LHet.g252.t1; prot=NP_001104024/7227/CG41316 CG41316-PA [Drosophila melanogaster]
3LHet	1108559	1109156	0.53	-	.	ID=DGIL_AUG30_p1.3LHet.g253.t1; prot=XP_001201290/7668/PREDICTED: similar to retrotransposon protein, putative, Ty3-gypsy subclass [Strongylocentrotus purpuratus]
3LHet	1113443	1114136	0.61	-	.	ID=DGIL_AUG30_p1.3LHet.g257.t1; prot=XP_001868753/7176/malate dehydrogenase [Culex pipiens quinquefasciatus]
3LHet	1116655	1116956	0.47	-	.	ID=DGIL_AUG30_p1.3LHet.g259.t1; prot=NP_001104024/7227/CG41316 CG41316-PA [Drosophila melanogaster]
3LHet	1121340	1121706	0.21	-	.	ID=DGIL_AUG30_p1.3LHet.g261.t1; prot=NP_001104024/7227/CG41316 CG41316-PA [Drosophila melanogaster]
3LHet	1121847	1128382	0.1	+	.	ID=DGIL_AUG30_p1.3LHet.g262.t1; est=BP546447,BP540314; prot=P04282/7227/Retrovirus-related Gag polyprotein from copia-like transposable element 17.6
3LHet	1129177	1130081	0.11	+	.	ID=DGIL_AUG30_p1.3LHet.g263.t1; prot=ZP_00373813/307502/reverse transcriptase polyprotein [Wolbachia endosymbiont of Drosophila ananassae]
3LHet	1145658	1147156	0.03	-	.	ID=DGIL_AUG30_p1.3LHet.g267.t1; prot=XP_001599285/7425/PREDICTED: similar to BEL12_AG transposon polyprotein [Nasonia vitripennis]
3LHet	1151147	1155991	0.01	+	.	ID=DGIL_AUG30_p1.3LHet.g268.t1; prot=ABI48303/7227/pol protein [Drosophila melanogaster]
3LHet	1156047	1156978	0.06	+	.	ID=DGIL_AUG30_p1.3LHet.g269.t1; prot=ZP_00373813/307502/reverse transcriptase polyprotein [Wolbachia endosymbiont of Drosophila ananassae]
3LHet	1157027	1157722	0.1	+	.	ID=DGIL_AUG30_p1.3LHet.g270.t1; prot=ZP_00373813/307502/reverse transcriptase polyprotein [Wolbachia endosymbiont of Drosophila ananassae]
3LHet	1160785	1167066	0.01	-	.	ID=DGIL_AUG30_p1.3LHet.g271.t1; est=BI605028; prot=AAK52057/7227/gag protein [Drosophila melanogaster]
3LHet	1167587	1175286	0.01	-	.	ID=DGIL_AUG30_p1.3LHet.g272.t1; prot=AAA28508/7227/reverse transcriptase (put.);  putative
3LHet	1179048	1179996	0.15	-	.	ID=DGIL_AUG30_p1.3LHet.g274.t1; prot=NP_001015295/7227/CG40122 CG40122-PA [Drosophila melanogaster]
3LHet	1183507	1184531	0.27	+	.	ID=DGIL_AUG30_p1.3LHet.g277.t1; prot=ZP_00373731/307502/gag protein [Wolbachia endosymbiont of Drosophila ananassae]
3LHet	1184597	1185675	0.1	+	.	ID=DGIL_AUG30_p1.3LHet.g278.t1; prot=CAB39733/7264/protease, reverse transcriptase, ribonuclease H, integrase [Drosophila buzzatii]
3LHet	1191318	1193586	0.11	-	.	ID=DGIL_AUG30_p1.3LHet.g282.t1; prot=AAK52056/7227/envelope protein [Drosophila melanogaster]
3LHet	1193866	1201716	0.01	-	.	ID=DGIL_AUG30_p1.3LHet.g283.t1; est=EC215111,CO308906; prot=AAK52055/7227/RNA-directed DNA polymerase [Drosophila melanogaster]
3LHet	1208528	1208956	0.06	-	.	ID=DGIL_AUG30_p1.3LHet.g285.t1; prot=ZP_00373812/307502/putative retrovirus-like env glycoprotein [Wolbachia endosymbiont of Drosophila ananassae]
3LHet	1209527	1210132	0.13	+	.	ID=DGIL_AUG30_p1.3LHet.g286.t1; prot=XP_001606639/7425/PREDICTED: similar to lachesin, putative [Nasonia vitripennis]
3LHet	1210138	1210636	0.53	-	.	ID=DGIL_AUG30_p1.3LHet.g287.t1; prot=ZP_00373813/307502/reverse transcriptase polyprotein [Wolbachia endosymbiont of Drosophila ananassae]
3LHet	1234398	1234855	0.37	+	.	ID=DGIL_AUG30_p1.3LHet.g296.t1; prot=Q967S7/7227/Retrovirus-related Gag polyprotein from transposon HMS-Beagle
3LHet	1240958	1245197	0.03	+	.	ID=DGIL_AUG30_p1.3LHet.g297.t1; prot=AAM11674/7227/pol protein [Drosophila melanogaster]
3LHet	1273268	1278902	0.02	+	.	ID=DGIL_AUG30_p1.3LHet.g305.t1; prot=NP_001104441/7227/CG41392 CG41392-PA [Drosophila melanogaster]
3LHet	1286578	1289092	0.03	+	.	ID=DGIL_AUG30_p1.3LHet.g306.t1; est=EL873462,EL875407,BI627957; prot=AAM51136/7227/SD26211p [Drosophila melanogaster]
3LHet	1293098	1293988	0.11	+	.	ID=DGIL_AUG30_p1.3LHet.g307.t1; prot=XP_001493536/9796/PREDICTED: similar to cerebral protein-4 [Equus caballus]
3LHet	1316317	1317157	0.06	-	.	ID=DGIL_AUG30_p1.3LHet.g311.t1; prot=XP_001601007/7425/PREDICTED: similar to BEL12_AG transposon polyprotein, partial [Nasonia vitripennis]
3LHet	1317259	1318397	0.2	-	.	ID=DGIL_AUG30_p1.3LHet.g312.t1; prot=XP_001599032/7425/PREDICTED: similar to BEL12_AG transposon polyprotein [Nasonia vitripennis]
3LHet	1323309	1324457	0.23	-	.	ID=DGIL_AUG30_p1.3LHet.g314.t1; prot=XP_001599032/7425/PREDICTED: similar to BEL12_AG transposon polyprotein [Nasonia vitripennis]
3LHet	1333815	1335077	0.13	-	.	ID=DGIL_AUG30_p1.3LHet.g316.t1; prot=NP_001104443/7227/CG41280 CG41280-PA [Drosophila melanogaster]
3LHet	1335140	1336317	0.21	-	.	ID=DGIL_AUG30_p1.3LHet.g317.t1; prot=CAA33738/7227/unnamed protein product [Drosophila melanogaster]
3LHet	1336704	1343857	0.05	-	.	ID=DGIL_AUG30_p1.3LHet.g318.t1; prot=AAK52055/7227/RNA-directed DNA polymerase [Drosophila melanogaster]
3LHet	1369779	1370947	0.09	-	.	ID=DGIL_AUG30_p1.3LHet.g322.t1; prot=XP_001865366/7176/zinc knuckle domain protein [Culex pipiens quinquefasciatus]
3LHet	1379268	1380787	0.01	-	.	ID=DGIL_AUG30_p1.3LHet.g326.t1; prot=NP_001015339/7227/CG40385 CG40385-PA [Drosophila melanogaster]
3LHet	1389268	1390136	0.13	+	.	ID=DGIL_AUG30_p1.3LHet.g329.t1; prot=AAC24972/7245/reverse transcriptase [Drosophila yakuba]
3LHet	1404697	1405961	0.38	+	.	ID=DGIL_AUG30_p1.3LHet.g332.t1; prot=XP_001865366/7176/zinc knuckle domain protein [Culex pipiens quinquefasciatus]
3LHet	1406037	1406921	0.2	+	.	ID=DGIL_AUG30_p1.3LHet.g333.t1; prot=NP_001015295/7227/CG40122 CG40122-PA [Drosophila melanogaster]
3LHet	1406938	1408316	0.08	-	.	ID=DGIL_AUG30_p1.3LHet.g334.t1; prot=CAB39733/7264/protease, reverse transcriptase, ribonuclease H, integrase [Drosophila buzzatii]
3LHet	1412652	1413246	0.07	-	.	ID=DGIL_AUG30_p1.3LHet.g337.t1; prot=NP_001015091/7227/CG40269 CG40269-PA [Drosophila melanogaster]
3LHet	1414447	1418871	0.01	+	.	ID=DGIL_AUG30_p1.3LHet.g339.t1; est=BI564859,BI568597,BI581440,BI583647,BI587883,BI591415,BI593366,BI604926,BI607893,BI611834,BI611969,BI612826,BI621163,BI622596,BI627041,more; prot=CAB99192/7227/endonuclease/reverse transcriptase [Drosophila melanogaster]
3LHet	1419927	1423451	0.01	+	.	ID=DGIL_AUG30_p1.3LHet.g341.t1; prot=CAB99192/7227/endonuclease/reverse transcriptase [Drosophila melanogaster]
3LHet	1428547	1429701	0.08	+	.	ID=DGIL_AUG30_p1.3LHet.g344.t1; prot=XP_001599032/7425/PREDICTED: similar to BEL12_AG transposon polyprotein [Nasonia vitripennis]
3LHet	1433790	1436036	0.05	-	.	ID=DGIL_AUG30_p1.3LHet.g346.t1; prot=AAC47095/7227/transposase [Drosophila melanogaster]
3LHet	1440698	1456146	0.01	-	.	ID=DGIL_AUG30_p1.3LHet.g348.t1; prot=CAB99192/7227/endonuclease/reverse transcriptase [Drosophila melanogaster]
3LHet	1495658	1497476	0.01	-	.	ID=DGIL_AUG30_p1.3LHet.g350.t1; prot=ZP_00373430/307502/Pol protein [Wolbachia endosymbiont of Drosophila ananassae]
3LHet	1502787	1522126	0.01	+	.	ID=DGIL_AUG30_p1.3LHet.g353.t1; est=BI372766; prot=AAC82604/7227/Prgag-pol [Drosophila melanogaster]
3LHet	1538137	1544742	0.09	+	.	ID=DGIL_AUG30_p1.3LHet.g359.t1; prot=AAL25501/7227/SD04061p [Drosophila melanogaster]
3LHet	1552017	1553641	0.38	+	.	ID=DGIL_AUG30_p1.3LHet.g361.t1; prot=ZP_00373907/307502/envelope protein [Wolbachia endosymbiont of Drosophila ananassae]
3LHet	1557586	1559606	0.14	-	.	ID=DGIL_AUG30_p1.3LHet.g363.t1; prot=NP_001104129/7227/CG41586 CG41586-PA [Drosophila melanogaster]
3LHet	1578680	1591306	0.03	-	.	ID=DGIL_AUG30_p1.3LHet.g368.t1; prot=ABD72267/7264/pol polyprotein [Drosophila buzzatii]
3LHet	1591881	1598569	0.01	+	.	ID=DGIL_AUG30_p1.3LHet.g369.t1; prot=Q9NBX4/7227/Probable RNA-directed DNA polymerase from transposon X-element (Reverse transcriptase)
3LHet	1598596	1605510	0.01	-	.	ID=DGIL_AUG30_p1.3LHet.g370.t1; prot=Q9NBX4/7227/Probable RNA-directed DNA polymerase from transposon X-element (Reverse transcriptase)
3LHet	1611002	1611780	0.15	-	.	ID=DGIL_AUG30_p1.3LHet.g375.t1; prot=ABD72267/7264/pol polyprotein [Drosophila buzzatii]
3LHet	1613102	1615210	0.27	-	.	ID=DGIL_AUG30_p1.3LHet.g377.t1; prot=ABD72267/7264/pol polyprotein [Drosophila buzzatii]
3LHet	1615262	1616340	0.13	-	.	ID=DGIL_AUG30_p1.3LHet.g378.t1; prot=NP_001104160/7227/CG40924 CG40924-PA [Drosophila melanogaster]
3LHet	1616493	1623990	0.01	-	.	ID=DGIL_AUG30_p1.3LHet.g379.t1; prot=Q9NBX4/7227/Probable RNA-directed DNA polymerase from transposon X-element (Reverse transcriptase)
3LHet	1626361	1627725	0.1	+	.	ID=DGIL_AUG30_p1.3LHet.g382.t1; prot=ABD72267/7264/pol polyprotein [Drosophila buzzatii]
3LHet	1633251	1633765	0.63	+	.	ID=DGIL_AUG30_p1.3LHet.g387.t1; prot=ABD72267/7264/pol polyprotein [Drosophila buzzatii]
3LHet	1645694	1646550	0.04	-	.	ID=DGIL_AUG30_p1.3LHet.g394.t1; prot=XP_001602609/7425/PREDICTED: similar to conserved hypothetical protein [Nasonia vitripennis]
3LHet	1662671	1664200	0.07	-	.	ID=DGIL_AUG30_p1.3LHet.g399.t1; prot=CAA08806/7227/Gag protein [Drosophila melanogaster]
3LHet	1664301	1670911	0.01	+	.	ID=DGIL_AUG30_p1.3LHet.g400.t1; est=EC218623,CO178590; prot=P21328/7227/RNA-directed DNA polymerase from mobile element jockey (Reverse transcriptase)
3LHet	1676139	1678510	0.12	-	.	ID=DGIL_AUG30_p1.3LHet.g402.t1; prot=B38418/7221/jockey protein 1 - fruit fly (Drosophila funebris)
3LHet	1701384	1703680	0.08	-	.	ID=DGIL_AUG30_p1.3LHet.g409.t1; prot=NP_001104417/7227/CG41284 CG41284-PA [Drosophila melanogaster]
3LHet	1725101	1725720	0.38	+	.	ID=DGIL_AUG30_p1.3LHet.g415.t1; prot=AAC28744/7213/env-like protein [Ceratitis capitata]
3LHet	1732971	1733931	0.06	+	.	ID=DGIL_AUG30_p1.3LHet.g417.t1; prot=AAK53386/7227/reverse transcriptase-like polymerase [Drosophila melanogaster]
3LHet	1738322	1740560	0.03	-	.	ID=DGIL_AUG30_p1.3LHet.g418.t1; prot=AAK52056/7227/envelope protein [Drosophila melanogaster]
3LHet	1740821	1741560	0.03	-	.	ID=DGIL_AUG30_p1.3LHet.g419.t1; prot=AAO67558/7244/Gag protein [Drosophila virilis]
3LHet	1760082	1769010	0.03	-	.	ID=DGIL_AUG30_p1.3LHet.g424.t1; prot=AAA28508/7227/reverse transcriptase (put.);  putative
3LHet	1780770	1781532	0.35	+	.	ID=DGIL_AUG30_p1.3LHet.g425.t1; prot=P10403/7227/Retrovirus-related Env polyprotein from transposon gypsy
3LHet	1786051	1787549	0.11	-	.	ID=DGIL_AUG30_p1.3LHet.g426.t1; prot=NP_001015297/7227/CG40124 CG40124-PA [Drosophila melanogaster]
3LHet	1794080	1795536	0.16	+	.	ID=DGIL_AUG30_p1.3LHet.g430.t1; prot=P10403/7227/Retrovirus-related Env polyprotein from transposon gypsy
3LHet	1835110	1839434	0.04	+	.	ID=DGIL_AUG30_p1.3LHet.g434.t1; est=EC264556; prot=P04146/7227/Copia protein (Gag-int-pol protein) [Contains: Copia VLP protein;  Copia protease ]
3LHet	1849941	1854359	0.13	-	.	ID=DGIL_AUG30_p1.3LHet.g439.t1; prot=CAA32198/7227/polyprotein [Drosophila melanogaster]
3LHet	1854821	1859239	0.08	-	.	ID=DGIL_AUG30_p1.3LHet.g440.t1; prot=CAA32198/7227/polyprotein [Drosophila melanogaster]
3LHet	1859701	1863059	0.07	-	.	ID=DGIL_AUG30_p1.3LHet.g441.t1; prot=CAA32198/7227/polyprotein [Drosophila melanogaster]
3LHet	1865351	1866519	0.12	-	.	ID=DGIL_AUG30_p1.3LHet.g442.t1; prot=AAL29119/7227/SD01935p [Drosophila melanogaster]
3LHet	1891581	1892809	0.14	-	.	ID=DGIL_AUG30_p1.3LHet.g446.t1; prot=ABM90392/202578/polyprotein [Chlamys farreri]
3LHet	1908331	1926669	0.02	-	.	ID=DGIL_AUG30_p1.3LHet.g449.t1; prot=P21328/7227/RNA-directed DNA polymerase from mobile element jockey (Reverse transcriptase)
3LHet	1927061	1930079	0.01	-	.	ID=DGIL_AUG30_p1.3LHet.g450.t1; prot=P21328/7227/RNA-directed DNA polymerase from mobile element jockey (Reverse transcriptase)
3LHet	1931081	1932069	0.06	-	.	ID=DGIL_AUG30_p1.3LHet.g451.t1; prot=XP_001657038/7159/out at first protein [Aedes aegypti]
3LHet	1934390	1935379	0.24	-	.	ID=DGIL_AUG30_p1.3LHet.g453.t1; prot=XP_001657038/7159/out at first protein [Aedes aegypti]
3LHet	1956890	1957679	0.01	-	.	ID=DGIL_AUG30_p1.3LHet.g457.t1; prot=AAB50147/7227/gag protein [Drosophila melanogaster]
3LHet	1965766	1966611	0.05	-	.	ID=DGIL_AUG30_p1.3LHet.g458.t1; prot=AAB50147/7227/gag protein [Drosophila melanogaster]
3LHet	1967206	1971121	0.12	-	.	ID=DGIL_AUG30_p1.3LHet.g459.t1; prot=AAB50147/7227/gag protein [Drosophila melanogaster]
3LHet	1975279	1976391	0.05	-	.	ID=DGIL_AUG30_p1.3LHet.g460.t1; prot=AAB50147/7227/gag protein [Drosophila melanogaster]
3LHet	1976902	1979906	0.29	+	.	ID=DGIL_AUG30_p1.3LHet.g461.t1; prot=XP_001201259/7668/PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
3LHet	1994262	1994740	0.22	+	.	ID=DGIL_AUG30_p1.3LHet.g465.t1; prot=CAA47913/7227/ORF [Drosophila melanogaster]
3LHet	2002116	2002820	0.99	+	.	ID=DGIL_AUG30_p2.3LHet.g12.t1; prot=CAA47913/7227/ORF [Drosophila melanogaster]
3LHet	2007036	2011182	0.01	+	.	ID=DGIL_AUG30_p2.3LHet.g14.t1; prot=BAD01589/7240/hypothetical protein [Drosophila simulans]
3LHet	2016976	2018680	0.35	+	.	ID=DGIL_AUG30_p2.3LHet.g16.t1; prot=ZP_00373907/307502/envelope protein [Wolbachia endosymbiont of Drosophila ananassae]
3LHet	2021713	2022095	0.25	-	.	ID=DGIL_AUG30_p2.3LHet.g18.t1; prot=AAY54894/7227/IP06032p [Drosophila melanogaster]
3LHet	2026801	2034295	0.07	-	.	ID=DGIL_AUG30_p2.3LHet.g20.t1; prot=NP_608731/7227/CG9641 CG9641-PA, isoform A [Drosophila melanogaster]
3LHet	2040936	2045202	0.06	+	.	ID=DGIL_AUG30_p2.3LHet.g21.t1; prot=AAK77263/7227/GH03753p [Drosophila melanogaster]
3LHet	2046746	2048320	0.04	+	.	ID=DGIL_AUG30_p2.3LHet.g22.t1; prot=CAA32198/7227/polyprotein [Drosophila melanogaster]
3LHet	2078394	2080845	0.05	-	.	ID=DGIL_AUG30_p2.3LHet.g27.t1; est=BG639757; prot=BAD01589/7240/hypothetical protein [Drosophila simulans]
3LHet	2087961	2099215	0.01	-	.	ID=DGIL_AUG30_p2.3LHet.g29.t1; prot=CAB99192/7227/endonuclease/reverse transcriptase [Drosophila melanogaster]
3LHet	2102906	2104331	0.08	+	.	ID=DGIL_AUG30_p2.3LHet.g30.t1; prot=AAY84918/7227/IP10023p [Drosophila melanogaster]
3LHet	2150335	2150953	0.1	-	.	ID=DGIL_AUG30_p2.3LHet.g35.t1; prot=AAN87269/7227/ORF [Drosophila melanogaster]
3LHet	2151713	2153113	0.3	-	.	ID=DGIL_AUG30_p2.3LHet.g37.t1; prot=ABH09250/7113/putative DNA-mediated transposase [Helicoverpa zea]
3LHet	2158964	2159498	0.1	+	.	ID=DGIL_AUG30_p2.3LHet.g41.t1; prot=AAM51136/7227/SD26211p [Drosophila melanogaster]
3LHet	2211194	2211893	0.46	-	.	ID=DGIL_AUG30_p2.3LHet.g49.t1; prot=S00953/7227/gag protein - fruit fly (Drosophila melanogaster) transposon 1731
3LHet	2213077	2219953	0.15	-	.	ID=DGIL_AUG30_p2.3LHet.g51.t1; prot=XP_001599568/7425/PREDICTED: similar to ENSANGP00000012343 [Nasonia vitripennis]
3LHet	2223464	2224975	0.05	+	.	ID=DGIL_AUG30_p2.3LHet.g54.t1; prot=NP_001104151/7227/CG41538 CG41538-PA [Drosophila melanogaster]
3LHet	2237634	2238271	0.14	+	.	ID=DGIL_AUG30_p2.3LHet.g58.t1; prot=NP_001036405/7227/CG41121 CG41121-PA, isoform A [Drosophila melanogaster]
3LHet	2239624	2241636	0.1	+	.	ID=DGIL_AUG30_p2.3LHet.g59.t1; prot=ABI96219/7220/unknown [Drosophila erecta]
3LHet	2272054	2272700	0.12	+	.	ID=DGIL_AUG30_p2.3LHet.g72.t1; prot=AAN73844/13686/reverse transcriptase/RNaseH [Solenopsis invicta]
3LHet	2283615	2284673	0.14	-	.	ID=DGIL_AUG30_p2.3LHet.g78.t1; prot=ABI48303/7227/pol protein [Drosophila melanogaster]
3LHet	2284829	2286313	0.02	-	.	ID=DGIL_AUG30_p2.3LHet.g79.t1; prot=ZP_00373731/307502/gag protein [Wolbachia endosymbiont of Drosophila ananassae]
3LHet	2294144	2295162	0.07	+	.	ID=DGIL_AUG30_p2.3LHet.g81.t1; prot=NP_001104412/7227/CG41430 CG41430-PA [Drosophila melanogaster]
3LHet	2303438	2304462	0.07	+	.	ID=DGIL_AUG30_p2.3LHet.g84.t1; prot=NP_001104412/7227/CG41430 CG41430-PA [Drosophila melanogaster]
3LHet	2313228	2314353	0.06	+	.	ID=DGIL_AUG30_p2.3LHet.g88.t1; prot=NP_001104412/7227/CG41430 CG41430-PA [Drosophila melanogaster]
3LHet	2323228	2324274	0.18	+	.	ID=DGIL_AUG30_p2.3LHet.g93.t1; prot=NP_001104412/7227/CG41430 CG41430-PA [Drosophila melanogaster]
3LHet	2373618	2377882	0.26	+	.	ID=DGIL_AUG30_p2.3LHet.g95.t1; prot=AAK77263/7227/GH03753p [Drosophila melanogaster]
3LHet	2400324	2406997	0.01	-	.	ID=DGIL_AUG30_p2.3LHet.g102.t1; prot=AAK52055/7227/RNA-directed DNA polymerase [Drosophila melanogaster]
3LHet	2427498	2429118	0.03	+	.	ID=DGIL_AUG30_p2.3LHet.g104.t1; prot=CAA65152/7227/orf [Drosophila melanogaster]
3LHet	2430338	2433272	0.07	+	.	ID=DGIL_AUG30_p2.3LHet.g105.t1; prot=CAA32198/7227/polyprotein [Drosophila melanogaster]
3LHet	2434118	2437042	0.14	+	.	ID=DGIL_AUG30_p2.3LHet.g106.t1; prot=CAA32198/7227/polyprotein [Drosophila melanogaster]
3LHet	2437888	2440822	0.27	+	.	ID=DGIL_AUG30_p2.3LHet.g107.t1; prot=CAA32198/7227/polyprotein [Drosophila melanogaster]
3LHet	2441668	2445421	0.01	+	.	ID=DGIL_AUG30_p2.3LHet.g108.t1; prot=CAA32198/7227/polyprotein [Drosophila melanogaster]
3LHet	2445688	2446982	0.1	+	.	ID=DGIL_AUG30_p2.3LHet.g109.t1; prot=AAC24969/7240/reverse transcriptase [Drosophila simulans]
3LHet	2459639	2462127	0.09	-	.	ID=DGIL_AUG30_p2.3LHet.g114.t1; est=EC196521,EC254755,CO341580; prot=ABI48303/7227/pol protein [Drosophila melanogaster]
3LHet	2463611	2464247	0.05	-	.	ID=DGIL_AUG30_p2.3LHet.g115.t1; prot=AAC28744/7213/env-like protein [Ceratitis capitata]
3LHet	2470587	2471031	0.32	+	.	ID=DGIL_AUG30_p2.3LHet.g116.t1; prot=XP_001360569/7237/GA13013-PA [Drosophila pseudoobscura]
3LHet	2501528	2501896	0.17	-	.	ID=DGIL_AUG30_p2.3LHet.g131.t1; prot=CAA04050/7227/RNase H;  integrase;  protease;  reverse transcriptase [Drosophila melanogaster]
3LHet	2509868	2511306	0.07	-	.	ID=DGIL_AUG30_p2.3LHet.g136.t1; prot=CAA04049/7227/Gag protein [Drosophila melanogaster]
3LHet	2515288	2517996	0.02	-	.	ID=DGIL_AUG30_p2.3LHet.g140.t1; prot=CAA32198/7227/polyprotein [Drosophila melanogaster]
3LHet	2518893	2519826	0.03	-	.	ID=DGIL_AUG30_p2.3LHet.g141.t1; prot=AAL29119/7227/SD01935p [Drosophila melanogaster]
3LHet	2534748	2535476	0.25	-	.	ID=DGIL_AUG30_p2.3LHet.g143.t1; prot=NP_001104023/7227/CG41318 CG41318-PA [Drosophila melanogaster]
3R	387118	387779	0.07	+	.	ID=DGIL_AUG30_p1.3R.g142.t1; prot=NP_001104162/7227/CG41549 CG41549-PA [Drosophila melanogaster]
3R	393240	395937	0.14	-	.	ID=DGIL_AUG30_p1.3R.g145.t1; prot=NP_001104461/7227/CG41389 CG41389-PA [Drosophila melanogaster]
3R	398158	399512	0.15	+	.	ID=DGIL_AUG30_p1.3R.g146.t1; prot=NP_001015177/7227/CG40189 CG40189-PA [Drosophila melanogaster]
3R	851535	852884	0.03	+	.	ID=DGIL_AUG30_p1.3R.g328.t1; prot=NP_001104028/7227/CG41234 CG41234-PA [Drosophila melanogaster]
3R	12465016	12465490	0.9	+	.	ID=DGIL_AUG30_p2.3R.g363.t1; est=EC061466,EC072132,EC083365,EC083409,EC083565,EC196088,EC201854,EC205411,EC205746,EC206656,EC210145,EC214215,EC216390,EC220713,EC225834,more; prot=AAV36841/7227/RH66459p [Drosophila melanogaster]
3R	12790219	12790660	0.32	-	.	ID=DGIL_AUG30_p2.3R.g563.t1; prot=S16497/7227/hypothetical protein - fruit fly (Drosophila melanogaster)
3R	13244052	13245018	0.22	+	.	ID=DGIL_AUG30_p2.3R.g767.t1; est=CO184931; prot=NP_650625/7227/CG14332 CG14332-PA [Drosophila melanogaster]
3R	14019501	14019904	0.29	-	.	ID=DGIL_AUG30_p3.3R.g219.t1; est=EC218884,EC247963,AA440334,CO287065,CO310373; prot=AAL28377/7227/GM01352p [Drosophila melanogaster]
3R	14754610	14756977	0.42	+	.	ID=DGIL_AUG30_p3.3R.g620.t1; est=BI612955,BI615448,BI622830,BI627327,BI636161; prot=AAM51091/7227/SD17750p [Drosophila melanogaster]
3R	15756048	15756835	0.16	-	.	ID=DGIL_AUG30_p4.3R.g88.t1; prot=BAB55594/7227/heparan sulfate 6-O-sulfotransferase [Drosophila melanogaster]
3R	16560403	16561076	0.07	+	.	ID=DGIL_AUG30_p4.3R.g542.t1; prot=XP_001358088/7237/GA16087-PA [Drosophila pseudoobscura]
3R	17154217	17154755	0.29	-	.	ID=DGIL_AUG30_p4.3R.g771.t1; prot=AAL25285/7227/GH06646p [Drosophila melanogaster]
3R	17192446	17193110	0.36	+	.	ID=DGIL_AUG30_p4.3R.g792.t1; est=BG636961,BI638307; prot=AAM50612/7227/GH07769p [Drosophila melanogaster]
3R	17193166	17193710	0.15	+	.	ID=DGIL_AUG30_p4.3R.g793.t1; est=EC205399,EC227195,EC250138,EC250139,CK131156,CO333616; prot=CAE52504/7227/Mod(mdg4)-55.8 [Drosophila melanogaster]
3R	17756195	17757502	0.27	-	.	ID=DGIL_AUG30_p5.3R.g115.t1; prot=AAY55145/7227/RH39037p [Drosophila melanogaster]
3R	18604945	18605517	0.43	-	.	ID=DGIL_AUG30_p5.3R.g566.t1; prot=AAN71462/7227/RE66017p [Drosophila melanogaster]
3R	18822180	18823163	0.16	+	.	ID=DGIL_AUG30_p5.3R.g699.t1; est=EL886798,EL886928,EL887054; prot=ABN49381/7227/IP18280p [Drosophila melanogaster]
3R	19457291	19458309	0.1	-	.	ID=DGIL_AUG30_p5.3R.g1077.t1; est=EL887056; prot=ABP87895/7227/IP18281p [Drosophila melanogaster]
3R	19703840	19704617	0.17	+	.	ID=DGIL_AUG30_p6.3R.g116.t1; est=AI531441; prot=AAL89939/7227/SD02481p [Drosophila melanogaster]
3R	19719380	19719804	0.2	+	.	ID=DGIL_AUG30_p6.3R.g126.t1; prot=NP_651662/7227/CG11842 CG11842-PA [Drosophila melanogaster]
3R	2096095	2097775	0.13	-	.	ID=DGIL_AUG30_p7.3R.g68.t1; prot=XP_001862628/7176/leucine-rich repeat serine/threonine-protein kinase 1 [Culex pipiens quinquefasciatus]
3R	2203507	2203935	0.09	+	.	ID=DGIL_AUG30_p7.3R.g120.t1; est=CA803374,CA803374,CA803614,CA803614,CA805539,CA805539,CA805779,CA805779,CA805801,CA805801,CA805961,CA805961,CO284803; prot=AAP12717/40366/Kunitz inhibitor-like protein 1 [Drosophila americana]
3R	2651081	2652249	0.35	-	.	ID=DGIL_AUG30_p7.3R.g391.t1; prot=XP_001359213/7237/GA10228-PA [Drosophila pseudoobscura]
3R	3674626	3675282	0.46	+	.	ID=DGIL_AUG30_p7.3R.g908.t1; prot=XP_001359794/7237/GA16074-PA [Drosophila pseudoobscura]
3R	22061520	22077604	0.55	+	.	ID=DGIL_AUG30_p8.3R.g284.t1; est=BF497643; prot=AAM12265/7227/AT11857p [Drosophila melanogaster]
3R	23302551	23304254	0.2	-	.	ID=DGIL_AUG30_p8.3R.g944.t1; est=BI574051,BI574606,BI576397,BI582746,BI588336,BI588391,BI621278,BI623657; prot=AAO74688/7227/RH09463p [Drosophila melanogaster]
3R	24811267	24812328	0.17	-	.	ID=DGIL_AUG30_p9.3R.g836.t1; est=BI564812,BI581236,BI581328,BI581345,BI581685,BI581782,BI581955,BI611777,BI615914; prot=AAR99093/7227/RH18724p [Drosophila melanogaster]
3R	24919419	24920063	0.16	+	.	ID=DGIL_AUG30_p9.3R.g914.t1; prot=AAZ86792/7227/GM04590p [Drosophila melanogaster]
3R	25210438	25210926	0.14	-	.	ID=DGIL_AUG30_p9.3R.g1107.t1; prot=XP_001744686/431895/predicted protein [Monosiga brevicollis MX1]
3R	25211057	25212241	0.39	+	.	ID=DGIL_AUG30_p9.3R.g1108.t1; prot=AAL25384/7227/GH25761p [Drosophila melanogaster]
3R	25267431	25268246	0.07	-	.	ID=DGIL_AUG30_p9.3R.g1145.t1; est=BI576640,BI592088,BI611485; prot=AAN71536/7227/RH17774p [Drosophila melanogaster]
3R	4313318	4314422	0.08	+	.	ID=DGIL_AUG30_p12.3R.g227.t1; prot=XP_001714369/9606/PREDICTED: hypothetical protein [Homo sapiens]
3R	4893840	4894281	0.42	-	.	ID=DGIL_AUG30_p12.3R.g510.t1; est=EC208811,EC235357,EV577684,CO325115; prot=AAL28476/7227/GM06790p [Drosophila melanogaster]
3R	5654418	5655166	0.24	-	.	ID=DGIL_AUG30_p12.3R.g916.t1; prot=XP_001358570/7237/GA11821-PA [Drosophila pseudoobscura]
3R	5818748	5819312	0.13	+	.	ID=DGIL_AUG30_p12.3R.g1062.t1; est=EC258527,CO344327; prot=AAL25383/7227/GH25505p [Drosophila melanogaster]
3R	7219399	7220253	0.73	+	.	ID=DGIL_AUG30_p13.3R.g746.t1; prot=AAM50747/7227/HL08040p [Drosophila melanogaster]
3R	7592628	7593052	0.2	-	.	ID=DGIL_AUG30_p13.3R.g955.t1; est=EC254434,BP556546,CO326780; prot=AAO74701/7227/GM07658p [Drosophila melanogaster]
3R	8098845	8099519	0.3	+	.	ID=DGIL_AUG30_p14.3R.g142.t1; est=BG632753,AI402399; prot=ABI34149/7227/GH21617p [Drosophila melanogaster]
3R	9129163	9129590	0.39	+	.	ID=DGIL_AUG30_p14.3R.g678.t1; est=EL887418,EL887418,EL887453,EL887453,EL887481,EL887481,EL887519,EL887519; prot=ABN49430/7227/IP18626p [Drosophila melanogaster]
3R	9138609	9138912	0.49	-	.	ID=DGIL_AUG30_p14.3R.g679.t1; est=EV589731; prot=AAY98011/35570/putative 7.4 kDa secreted salivary gland protein [Stomoxys calcitrans]
3R	9356757	9357631	0.1	-	.	ID=DGIL_AUG30_p14.3R.g799.t1; prot=YP_321943/240292/UvrD/REP helicase [Anabaena variabilis ATCC 29413]
3R	10508570	10508986	0.26	-	.	ID=DGIL_AUG30_p15.3R.g434.t1; prot=AAN71559/7227/RH30043p [Drosophila melanogaster]
3R	10697569	10698535	0.01	-	.	ID=DGIL_AUG30_p15.3R.g564.t1; prot=AAO39619/7227/GH12056p [Drosophila melanogaster]
3RHet	3587	5125	0.17	-	.	ID=DGIL_AUG30_p1.3RHet.g3.t1; prot=NP_001104434/7227/CG41287 CG41287-PA [Drosophila melanogaster]
3RHet	6428	7975	0.09	-	.	ID=DGIL_AUG30_p1.3RHet.g6.t1; prot=AAY84918/7227/IP10023p [Drosophila melanogaster]
3RHet	10126	11374	0.04	+	.	ID=DGIL_AUG30_p1.3RHet.g9.t1; prot=CAA81643/7227/blastopia polyprotein [Drosophila melanogaster]
3RHet	11966	14475	0.3	-	.	ID=DGIL_AUG30_p1.3RHet.g10.t1; prot=P20828/7227/Retrovirus-related Gag polyprotein from transposon 297
3RHet	25576	26760	0.13	+	.	ID=DGIL_AUG30_p1.3RHet.g15.t1; prot=AAL90081/7227/AT16518p [Drosophila melanogaster]
3RHet	45896	51500	0.12	+	.	ID=DGIL_AUG30_p1.3RHet.g19.t1; prot=AAA28508/7227/reverse transcriptase (put.);  putative
3RHet	66886	71180	0.01	+	.	ID=DGIL_AUG30_p1.3RHet.g21.t1; prot=AAM51136/7227/SD26211p [Drosophila melanogaster]
3RHet	71656	72180	0.1	+	.	ID=DGIL_AUG30_p1.3RHet.g23.t1; prot=NP_001104170/7227/CG40506 CG40506-PA [Drosophila melanogaster]
3RHet	77187	81935	0.05	-	.	ID=DGIL_AUG30_p1.3RHet.g24.t1; prot=AAM11672/7227/polyprotein [Drosophila melanogaster]
3RHet	82036	84230	0.06	+	.	ID=DGIL_AUG30_p1.3RHet.g25.t1; est=BG633369; prot=AAK52057/7227/gag protein [Drosophila melanogaster]
3RHet	87729	88565	0.19	-	.	ID=DGIL_AUG30_p1.3RHet.g26.t1; prot=NP_001104441/7227/CG41392 CG41392-PA [Drosophila melanogaster]
3RHet	104490	107945	0.11	-	.	ID=DGIL_AUG30_p1.3RHet.g27.t1; prot=CAA81643/7227/blastopia polyprotein [Drosophila melanogaster]
3RHet	108447	111415	0.01	-	.	ID=DGIL_AUG30_p1.3RHet.g28.t1; prot=CAB99191/7227/gag-like protein [Drosophila melanogaster]
3RHet	114026	114342	0.23	+	.	ID=DGIL_AUG30_p1.3RHet.g29.t1; prot=ZP_00373813/307502/reverse transcriptase polyprotein [Wolbachia endosymbiont of Drosophila ananassae]
3RHet	114396	115640	0.12	+	.	ID=DGIL_AUG30_p1.3RHet.g30.t1; prot=NP_001015332/7227/CG40096 CG40096-PA [Drosophila melanogaster]
3RHet	115696	120580	0.39	+	.	ID=DGIL_AUG30_p1.3RHet.g31.t1; prot=BAD01589/7240/hypothetical protein [Drosophila simulans]
3RHet	123746	134981	0.01	+	.	ID=DGIL_AUG30_p1.3RHet.g34.t1; prot=AAB66824/7244/Tel1 [Drosophila virilis]
3RHet	140804	150425	0.01	-	.	ID=DGIL_AUG30_p1.3RHet.g35.t1; est=AI534342; prot=AAB66824/7244/Tel1 [Drosophila virilis]
3RHet	153330	162045	0.08	-	.	ID=DGIL_AUG30_p1.3RHet.g37.t1; prot=P04282/7227/Retrovirus-related Gag polyprotein from copia-like transposable element 17.6
3RHet	162134	163735	0.01	-	.	ID=DGIL_AUG30_p1.3RHet.g38.t1; prot=ABI48304/7227/env protein [Drosophila melanogaster]
3RHet	180875	190816	0.01	+	.	ID=DGIL_AUG30_p1.3RHet.g41.t1; est=AI532142; prot=NP_608731/7227/CG9641 CG9641-PA, isoform A [Drosophila melanogaster]
3RHet	192856	195234	0.03	-	.	ID=DGIL_AUG30_p1.3RHet.g42.t1; est=BG639620; prot=CAJ00232/6183/TPA: gag-pol polyprotein [Schistosoma mansoni]
3RHet	195555	197594	0.01	-	.	ID=DGIL_AUG30_p1.3RHet.g43.t1; prot=XP_782581/7668/PREDICTED: similar to transposase [Strongylocentrotus purpuratus]
3RHet	211175	211637	0.14	+	.	ID=DGIL_AUG30_p1.3RHet.g46.t1; prot=CAD32253/7227/gag-pol polyprotein precursor;  hypothetical protein [Drosophila melanogaster]
3RHet	215505	226319	0.03	+	.	ID=DGIL_AUG30_p1.3RHet.g50.t1; est=AI114082; prot=NP_001104163/7227/CG40856 CG40856-PA [Drosophila melanogaster]
3RHet	229515	231459	0.04	+	.	ID=DGIL_AUG30_p1.3RHet.g52.t1; prot=CAD32253/7227/gag-pol polyprotein precursor;  hypothetical protein [Drosophila melanogaster]
3RHet	232575	240845	0.01	+	.	ID=DGIL_AUG30_p1.3RHet.g53.t1; prot=CAB99192/7227/endonuclease/reverse transcriptase [Drosophila melanogaster]
3RHet	265675	267029	0.3	+	.	ID=DGIL_AUG30_p1.3RHet.g57.t1; prot=AAL90081/7227/AT16518p [Drosophila melanogaster]
3RHet	267085	269035	0.04	+	.	ID=DGIL_AUG30_p1.3RHet.g58.t1; prot=P21328/7227/RNA-directed DNA polymerase from mobile element jockey (Reverse transcriptase)
3RHet	272945	274327	0.05	+	.	ID=DGIL_AUG30_p1.3RHet.g62.t1; prot=AAK77263/7227/GH03753p [Drosophila melanogaster]
3RHet	306655	309377	0.01	+	.	ID=DGIL_AUG30_p1.3RHet.g73.t1; prot=ZP_00373813/307502/reverse transcriptase polyprotein [Wolbachia endosymbiont of Drosophila ananassae]
3RHet	313173	315484	0.02	-	.	ID=DGIL_AUG30_p1.3RHet.g74.t1; prot=NP_001104130/7227/CG41587 CG41587-PA [Drosophila melanogaster]
3RHet	381898	382927	0.04	-	.	ID=DGIL_AUG30_p1.3RHet.g78.t1; prot=NP_001104106/7227/CG41569 CG41569-PA [Drosophila melanogaster]
3RHet	394438	397863	0.09	+	.	ID=DGIL_AUG30_p1.3RHet.g79.t1; prot=AAL25501/7227/SD04061p [Drosophila melanogaster]
3RHet	414028	414442	0.15	+	.	ID=DGIL_AUG30_p1.3RHet.g82.t1; prot=CAA35586/7227/ORF1 for putative RNA binding protein [Drosophila melanogaster]
3RHet	417568	417952	0.19	+	.	ID=DGIL_AUG30_p1.3RHet.g86.t1; prot=CAB39733/7264/protease, reverse transcriptase, ribonuclease H, integrase [Drosophila buzzatii]
3RHet	443881	445247	0.02	-	.	ID=DGIL_AUG30_p1.3RHet.g95.t1; est=CO187960; prot=AAN87266/7227/ORF1 [Drosophila melanogaster]
3RHet	523483	532127	0.01	+	.	ID=DGIL_AUG30_p1.3RHet.g96.t1; prot=AAK84928/7227/SD01615p [Drosophila melanogaster]
3RHet	543401	546332	0.01	-	.	ID=DGIL_AUG30_p1.3RHet.g97.t1; prot=BAA57030/7240/unnamed protein product [Drosophila simulans]
3RHet	588606	589272	0.22	-	.	ID=DGIL_AUG30_p1.3RHet.g103.t1; prot=ZP_00373731/307502/gag protein [Wolbachia endosymbiont of Drosophila ananassae]
3RHet	596683	597297	0.45	+	.	ID=DGIL_AUG30_p1.3RHet.g105.t1; prot=ZP_00373731/307502/gag protein [Wolbachia endosymbiont of Drosophila ananassae]
3RHet	604573	608287	0.05	+	.	ID=DGIL_AUG30_p1.3RHet.g109.t1; prot=P21328/7227/RNA-directed DNA polymerase from mobile element jockey (Reverse transcriptase)
3RHet	613804	632552	0.01	-	.	ID=DGIL_AUG30_p1.3RHet.g112.t1; prot=CAB99192/7227/endonuclease/reverse transcriptase [Drosophila melanogaster]
3RHet	634943	636877	0.06	+	.	ID=DGIL_AUG30_p1.3RHet.g113.t1; prot=NP_995746/7227/CG33347 CG33347-PA [Drosophila melanogaster]
3RHet	643290	649072	0.01	-	.	ID=DGIL_AUG30_p1.3RHet.g116.t1; prot=AAA28508/7227/reverse transcriptase (put.);  putative
3RHet	659104	659612	0.08	-	.	ID=DGIL_AUG30_p1.3RHet.g118.t1; prot=AAA28508/7227/reverse transcriptase (put.);  putative
3RHet	666493	670363	0.03	+	.	ID=DGIL_AUG30_p1.3RHet.g122.t1; prot=XP_001193133/7668/PREDICTED: similar to zinc finger protein, partial [Strongylocentrotus purpuratus]
3RHet	674363	675492	0.09	-	.	ID=DGIL_AUG30_p1.3RHet.g124.t1; prot=AAC47095/7227/transposase [Drosophila melanogaster]
3RHet	682192	686234	0.05	-	.	ID=DGIL_AUG30_p1.3RHet.g126.t1; prot=AAK52056/7227/envelope protein [Drosophila melanogaster]
3RHet	698765	703182	0.04	+	.	ID=DGIL_AUG30_p1.3RHet.g129.t1; est=BG639616; prot=P21328/7227/RNA-directed DNA polymerase from mobile element jockey (Reverse transcriptase)
3RHet	711455	711859	0.07	+	.	ID=DGIL_AUG30_p1.3RHet.g131.t1; prot=NP_001104116/7227/CG40624 CG40624-PA [Drosophila melanogaster]
3RHet	711876	714614	0.1	-	.	ID=DGIL_AUG30_p1.3RHet.g132.t1; prot=ZP_00373907/307502/envelope protein [Wolbachia endosymbiont of Drosophila ananassae]
3RHet	716795	717299	0.06	+	.	ID=DGIL_AUG30_p1.3RHet.g133.t1; prot=NP_001104116/7227/CG40624 CG40624-PA [Drosophila melanogaster]
3RHet	717306	720044	0.02	-	.	ID=DGIL_AUG30_p1.3RHet.g134.t1; prot=ZP_00373907/307502/envelope protein [Wolbachia endosymbiont of Drosophila ananassae]
3RHet	730582	733264	0.37	-	.	ID=DGIL_AUG30_p1.3RHet.g136.t1; prot=AAM11674/7227/pol protein [Drosophila melanogaster]
3RHet	733356	734124	0.06	-	.	ID=DGIL_AUG30_p1.3RHet.g137.t1; prot=XP_366265/242507/hypothetical protein MGG_10484 [Magnaporthe grisea 70-15]
3RHet	740556	748094	0.02	-	.	ID=DGIL_AUG30_p1.3RHet.g138.t1; prot=AAT47767/7227/RE14563p [Drosophila melanogaster]
3RHet	758160	759974	0.72	-	.	ID=DGIL_AUG30_p1.3RHet.g143.t1; prot=ZP_00373653/307502/indora [Wolbachia endosymbiont of Drosophila ananassae]
3RHet	761366	762524	0.05	-	.	ID=DGIL_AUG30_p1.3RHet.g145.t1; prot=XP_961927/367110/hypothetical protein NCU05314 [Neurospora crassa OR74A]
3RHet	776565	784639	0.15	+	.	ID=DGIL_AUG30_p1.3RHet.g146.t1; prot=Q9NBX4/7227/Probable RNA-directed DNA polymerase from transposon X-element (Reverse transcriptase)
3RHet	784646	792854	0.13	-	.	ID=DGIL_AUG30_p1.3RHet.g147.t1; prot=CAA65152/7227/orf [Drosophila melanogaster]
3RHet	803503	807444	0.18	-	.	ID=DGIL_AUG30_p1.3RHet.g149.t1; prot=AAA28508/7227/reverse transcriptase (put.);  putative
3RHet	808572	811084	0.09	-	.	ID=DGIL_AUG30_p1.3RHet.g150.t1; est=BI574380,BI574513,CK135123; prot=CAA35586/7227/ORF1 for putative RNA binding protein [Drosophila melanogaster]
3RHet	826295	826674	0.26	-	.	ID=DGIL_AUG30_p1.3RHet.g152.t1; prot=ZP_00373653/307502/indora [Wolbachia endosymbiont of Drosophila ananassae]
3RHet	826726	827264	0.35	-	.	ID=DGIL_AUG30_p1.3RHet.g153.t1; prot=ZP_00373653/307502/indora [Wolbachia endosymbiont of Drosophila ananassae]
3RHet	827316	828304	0.05	-	.	ID=DGIL_AUG30_p1.3RHet.g154.t1; prot=ABD72267/7264/pol polyprotein [Drosophila buzzatii]
3RHet	853155	859409	0.13	+	.	ID=DGIL_AUG30_p1.3RHet.g157.t1; prot=CAB99192/7227/endonuclease/reverse transcriptase [Drosophila melanogaster]
3RHet	873647	875605	0.01	-	.	ID=DGIL_AUG30_p1.3RHet.g160.t1; prot=CAD32253/7227/gag-pol polyprotein precursor;  hypothetical protein [Drosophila melanogaster]
3RHet	876333	887725	0.02	-	.	ID=DGIL_AUG30_p1.3RHet.g161.t1; est=BF494026; prot=CAA65152/7227/orf [Drosophila melanogaster]
3RHet	889776	892869	0.13	+	.	ID=DGIL_AUG30_p1.3RHet.g162.t1; prot=AAK77263/7227/GH03753p [Drosophila melanogaster]
3RHet	892936	893460	0.15	+	.	ID=DGIL_AUG30_p1.3RHet.g163.t1; prot=NP_001104121/7227/CG41018 CG41018-PA [Drosophila melanogaster]
3RHet	894356	897148	0.02	+	.	ID=DGIL_AUG30_p1.3RHet.g165.t1; prot=XP_792176/7668/PREDICTED: similar to OSJNBa0011F23.1 [Strongylocentrotus purpuratus]
3RHet	918296	921054	0.15	+	.	ID=DGIL_AUG30_p1.3RHet.g168.t1; est=AI534290,AI543621; prot=AAK52056/7227/envelope protein [Drosophila melanogaster]
3RHet	934797	935485	0.11	-	.	ID=DGIL_AUG30_p1.3RHet.g170.t1; prot=AAC28744/7213/env-like protein [Ceratitis capitata]
3RHet	942432	944105	0.02	-	.	ID=DGIL_AUG30_p1.3RHet.g171.t1; est=BI239852; prot=AAC28744/7213/env-like protein [Ceratitis capitata]
3RHet	975086	975930	0.15	+	.	ID=DGIL_AUG30_p1.3RHet.g173.t1; prot=P21329/7221/RNA-directed DNA polymerase from mobile element jockey (Reverse transcriptase)
3RHet	979487	980345	0.13	-	.	ID=DGIL_AUG30_p1.3RHet.g176.t1; prot=AAM51136/7227/SD26211p [Drosophila melanogaster]
3RHet	980827	981935	0.02	-	.	ID=DGIL_AUG30_p1.3RHet.g177.t1; prot=XP_966839/7070/PREDICTED: hypothetical protein, partial [Tribolium castaneum]
3RHet	983986	1005369	0.03	+	.	ID=DGIL_AUG30_p1.3RHet.g179.t1; prot=CAA51084/7241/unnamed protein product [Drosophila subobscura]
3RHet	1005765	1007055	0.08	-	.	ID=DGIL_AUG30_p1.3RHet.g180.t1; prot=NP_001015274/7227/CG40137 CG40137-PA [Drosophila melanogaster]
3RHet	1009468	1012475	0.07	-	.	ID=DGIL_AUG30_p1.3RHet.g182.t1; prot=NP_001015274/7227/CG40137 CG40137-PA [Drosophila melanogaster]
3RHet	1014576	1016493	0.17	+	.	ID=DGIL_AUG30_p1.3RHet.g183.t1; prot=AAM11674/7227/pol protein [Drosophila melanogaster]
3RHet	1018249	1021075	0.14	-	.	ID=DGIL_AUG30_p1.3RHet.g185.t1; prot=XP_001601007/7425/PREDICTED: similar to BEL12_AG transposon polyprotein, partial [Nasonia vitripennis]
3RHet	1021127	1021475	0.29	-	.	ID=DGIL_AUG30_p1.3RHet.g186.t1; prot=XP_001865366/7176/zinc knuckle domain protein [Culex pipiens quinquefasciatus]
3RHet	1026097	1026445	0.29	-	.	ID=DGIL_AUG30_p1.3RHet.g188.t1; prot=XP_001865366/7176/zinc knuckle domain protein [Culex pipiens quinquefasciatus]
3RHet	1027967	1034285	0.06	-	.	ID=DGIL_AUG30_p1.3RHet.g189.t1; est=BI630427; prot=NP_001104443/7227/CG41280 CG41280-PA [Drosophila melanogaster]
3RHet	1041928	1045387	0.01	-	.	ID=DGIL_AUG30_p1.3RHet.g191.t1; est=BI582254,BI583504,BI583544,BI605740,BI605902,BI606343,BI613218; prot=AAB65093/7159/Lian-Aa1 retrotransposon protein [Aedes aegypti]
3RHet	1045727	1047327	0.06	-	.	ID=DGIL_AUG30_p1.3RHet.g192.t1; prot=NP_001104170/7227/CG40506 CG40506-PA [Drosophila melanogaster]
3RHet	1049719	1050787	0.08	-	.	ID=DGIL_AUG30_p1.3RHet.g194.t1; prot=AAA28508/7227/reverse transcriptase (put.);  putative
3RHet	1050938	1055682	0.02	+	.	ID=DGIL_AUG30_p1.3RHet.g195.t1; est=AA141122; prot=ABY50130/7240/Gag-like protein [Drosophila simulans]
3RHet	1056968	1062982	0.05	+	.	ID=DGIL_AUG30_p1.3RHet.g197.t1; prot=ABY50130/7240/Gag-like protein [Drosophila simulans]
3RHet	1090978	1091982	0.13	+	.	ID=DGIL_AUG30_p1.3RHet.g201.t1; prot=AAN34650/7227/gag protein [Drosophila melanogaster]
3RHet	1092038	1096966	0.28	+	.	ID=DGIL_AUG30_p1.3RHet.g202.t1; prot=AAN34651/7227/pol protein [Drosophila melanogaster]
3RHet	1098080	1098567	0.18	-	.	ID=DGIL_AUG30_p1.3RHet.g203.t1; prot=NP_001104163/7227/CG40856 CG40856-PA [Drosophila melanogaster]
3RHet	1098777	1102117	0.01	-	.	ID=DGIL_AUG30_p1.3RHet.g204.t1; prot=NP_001104143/7227/CG40798 CG40798-PA [Drosophila melanogaster]
3RHet	1102608	1110716	0.01	+	.	ID=DGIL_AUG30_p1.3RHet.g205.t1; prot=AAB66824/7244/Tel1 [Drosophila virilis]
3RHet	1115012	1117727	0.02	-	.	ID=DGIL_AUG30_p1.3RHet.g207.t1; prot=ABY50130/7240/Gag-like protein [Drosophila simulans]
3RHet	1137285	1140947	0.01	-	.	ID=DGIL_AUG30_p1.3RHet.g210.t1; est=BI563707,BI574628,BI582659,BI584202,BI586331,BI588115,BI628499; prot=NP_001015332/7227/CG40096 CG40096-PA [Drosophila melanogaster]
3RHet	1142901	1144107	0.02	-	.	ID=DGIL_AUG30_p1.3RHet.g212.t1; est=BI568269; prot=AAL49291/7227/RH02410p [Drosophila melanogaster]
3RHet	1144728	1153302	0.04	+	.	ID=DGIL_AUG30_p1.3RHet.g213.t1; prot=NP_001104128/7227/CG41584 CG41584-PA [Drosophila melanogaster]
3RHet	1195958	1201134	0.01	+	.	ID=DGIL_AUG30_p1.3RHet.g216.t1; est=BI614168,BI617111,BI631317; prot=AAA28508/7227/reverse transcriptase (put.);  putative
3RHet	1201318	1203552	0.04	+	.	ID=DGIL_AUG30_p1.3RHet.g217.t1; prot=AAL49362/7227/RH47344p [Drosophila melanogaster]
3RHet	1204629	1205817	0.03	-	.	ID=DGIL_AUG30_p1.3RHet.g219.t1; prot=NP_001104371/7227/CG41595 CG41595-PA [Drosophila melanogaster]
3RHet	1208198	1210319	0.01	+	.	ID=DGIL_AUG30_p1.3RHet.g221.t1; prot=CAC79666/7227/env protein [Drosophila melanogaster]
3RHet	1210331	1218857	0.01	-	.	ID=DGIL_AUG30_p1.3RHet.g222.t1; est=BI574728; prot=CAD32253/7227/gag-pol polyprotein precursor;  hypothetical protein [Drosophila melanogaster]
3RHet	1223853	1224631	0.33	-	.	ID=DGIL_AUG30_p1.3RHet.g224.t1; prot=ZP_00373812/307502/putative retrovirus-like env glycoprotein [Wolbachia endosymbiont of Drosophila ananassae]
3RHet	1230942	1233719	0.03	+	.	ID=DGIL_AUG30_p1.3RHet.g226.t1; est=BG640039; prot=CAJ14165/7165/BEL12_AG transposon polyprotein [Anopheles gambiae]
3RHet	1257677	1263411	0.11	-	.	ID=DGIL_AUG30_p1.3RHet.g230.t1; prot=AAK52055/7227/RNA-directed DNA polymerase [Drosophila melanogaster]
3RHet	1263699	1265551	0.03	-	.	ID=DGIL_AUG30_p1.3RHet.g231.t1; est=BI574332; prot=AAK52057/7227/gag protein [Drosophila melanogaster]
3RHet	1270362	1272040	0.05	+	.	ID=DGIL_AUG30_p1.3RHet.g234.t1; prot=BAA33576/7091/unnamed protein product [Bombyx mori]
3RHet	1272702	1275900	0.07	+	.	ID=DGIL_AUG30_p1.3RHet.g235.t1; prot=AAM51136/7227/SD26211p [Drosophila melanogaster]
3RHet	1283882	1285009	0.21	+	.	ID=DGIL_AUG30_p1.3RHet.g236.t1; prot=ABY50130/7240/Gag-like protein [Drosophila simulans]
3RHet	1285672	1286951	0.22	+	.	ID=DGIL_AUG30_p1.3RHet.g237.t1; prot=AAM51136/7227/SD26211p [Drosophila melanogaster]
3RHet	1288752	1291926	0.11	+	.	ID=DGIL_AUG30_p1.3RHet.g238.t1; prot=ABY50130/7240/Gag-like protein [Drosophila simulans]
3RHet	1314722	1324441	0.01	+	.	ID=DGIL_AUG30_p1.3RHet.g242.t1; prot=CAB99192/7227/endonuclease/reverse transcriptase [Drosophila melanogaster]
3RHet	1378928	1386131	0.01	-	.	ID=DGIL_AUG30_p1.3RHet.g246.t1; prot=NP_001104023/7227/CG41318 CG41318-PA [Drosophila melanogaster]
3RHet	1386183	1386751	0.09	-	.	ID=DGIL_AUG30_p1.3RHet.g247.t1; prot=NP_001104023/7227/CG41318 CG41318-PA [Drosophila melanogaster]
3RHet	1390023	1393851	0.02	-	.	ID=DGIL_AUG30_p1.3RHet.g248.t1; prot=AAN87269/7227/ORF [Drosophila melanogaster]
3RHet	1396648	1400698	0.15	-	.	ID=DGIL_AUG30_p1.3RHet.g249.t1; est=EC209101,BP546328; prot=AAL29132/7227/SD03311p [Drosophila melanogaster]
3RHet	1400745	1411628	0.01	-	.	ID=DGIL_AUG30_p1.3RHet.g250.t1; prot=CAB99192/7227/endonuclease/reverse transcriptase [Drosophila melanogaster]
3RHet	1413990	1422268	0.02	-	.	ID=DGIL_AUG30_p1.3RHet.g252.t1; prot=CAD32253/7227/gag-pol polyprotein precursor;  hypothetical protein [Drosophila melanogaster]
3RHet	1437632	1445928	0.01	-	.	ID=DGIL_AUG30_p1.3RHet.g255.t1; est=BI592681; prot=NP_001104151/7227/CG41538 CG41538-PA [Drosophila melanogaster]
3RHet	1446059	1447734	0.12	+	.	ID=DGIL_AUG30_p1.3RHet.g256.t1; prot=ABS71025/7113/putative DNA-mediated transposase [Helicoverpa zea]
3RHet	1453352	1454438	0.07	-	.	ID=DGIL_AUG30_p1.3RHet.g258.t1; prot=AAN34649/7227/gag protein [Drosophila melanogaster]
3RHet	1455729	1458393	0.02	+	.	ID=DGIL_AUG30_p1.3RHet.g259.t1; prot=AAS13459/7240/putative reverse transcriptase [Drosophila simulans]
3RHet	1458459	1459223	0.14	+	.	ID=DGIL_AUG30_p1.3RHet.g260.t1; prot=NP_001015332/7227/CG40096 CG40096-PA [Drosophila melanogaster]
3RHet	1478531	1479118	0.16	-	.	ID=DGIL_AUG30_p1.3RHet.g267.t1; prot=AAB34004/30724/pol gene product {Gypsy/Ty3-class retrotransposon Cpr1} [Clupea pallasi=herring, testis, sperm, Peptide Transposon, 175 aa]
3RHet	1490298	1491458	0.13	-	.	ID=DGIL_AUG30_p1.3RHet.g269.t1; prot=NP_001015218/7227/CG40159 CG40159-PA [Drosophila melanogaster]
3RHet	1510339	1510913	0.23	+	.	ID=DGIL_AUG30_p1.3RHet.g275.t1; prot=AAN34649/7227/gag protein [Drosophila melanogaster]
3RHet	1514820	1526118	0.01	-	.	ID=DGIL_AUG30_p1.3RHet.g277.t1; prot=AAC82604/7227/Prgag-pol [Drosophila melanogaster]
3RHet	1533714	1535228	0.05	-	.	ID=DGIL_AUG30_p1.3RHet.g278.t1; prot=AAN34649/7227/gag protein [Drosophila melanogaster]
3RHet	1544149	1545416	0.07	+	.	ID=DGIL_AUG30_p1.3RHet.g281.t1; prot=B56679/7175/probable reverse transcriptase - house mosquito
3RHet	1546223	1550968	0.12	-	.	ID=DGIL_AUG30_p1.3RHet.g282.t1; prot=Q9NBX4/7227/Probable RNA-directed DNA polymerase from transposon X-element (Reverse transcriptase)
3RHet	1551979	1552598	0.16	+	.	ID=DGIL_AUG30_p1.3RHet.g284.t1; prot=AAK77263/7227/GH03753p [Drosophila melanogaster]
3RHet	1571219	1574583	0.05	+	.	ID=DGIL_AUG30_p1.3RHet.g288.t1; est=BI606811,BI628814; prot=AAC33318/7244/pol polyprotein [Drosophila virilis]
3RHet	1586318	1590918	0.49	+	.	ID=DGIL_AUG30_p1.3RHet.g290.t1; est=BI616456; prot=CAB99192/7227/endonuclease/reverse transcriptase [Drosophila melanogaster]
3RHet	1615438	1630112	0.08	+	.	ID=DGIL_AUG30_p1.3RHet.g294.t1; prot=CAB53564/30069/protease;  reverse transcriptase [Anopheles stephensi]
3RHet	1632318	1633307	0.17	+	.	ID=DGIL_AUG30_p1.3RHet.g295.t1; prot=CAA04049/7227/Gag protein [Drosophila melanogaster]
3RHet	1633368	1636480	0.21	+	.	ID=DGIL_AUG30_p1.3RHet.g296.t1; prot=AAN34648/7227/truncated pol protein [Drosophila melanogaster]
3RHet	1637249	1641037	0.01	-	.	ID=DGIL_AUG30_p1.3RHet.g298.t1; est=BG632170,AI107411; prot=NP_001104160/7227/CG40924 CG40924-PA [Drosophila melanogaster]
3RHet	1645489	1647717	0.08	-	.	ID=DGIL_AUG30_p1.3RHet.g300.t1; prot=CAB39733/7264/protease, reverse transcriptase, ribonuclease H, integrase [Drosophila buzzatii]
3RHet	1647764	1648297	0.15	-	.	ID=DGIL_AUG30_p1.3RHet.g301.t1; prot=CAB39732/7264/Gag protein [Drosophila buzzatii]
3RHet	1648408	1649628	0.23	+	.	ID=DGIL_AUG30_p1.3RHet.g302.t1; prot=NP_001015332/7227/CG40096 CG40096-PA [Drosophila melanogaster]
3RHet	1675788	1676685	0.1	+	.	ID=DGIL_AUG30_p1.3RHet.g306.t1; prot=AAC28743/7213/pol-like protein [Ceratitis capitata]
3RHet	1676938	1677476	0.15	+	.	ID=DGIL_AUG30_p1.3RHet.g307.t1; prot=AAC28743/7213/pol-like protein [Ceratitis capitata]
3RHet	1679248	1680062	0.19	+	.	ID=DGIL_AUG30_p1.3RHet.g308.t1; prot=AAC28744/7213/env-like protein [Ceratitis capitata]
3RHet	1682548	1683470	0.11	+	.	ID=DGIL_AUG30_p1.3RHet.g310.t1; prot=AAC28744/7213/env-like protein [Ceratitis capitata]
3RHet	1775081	1777120	0.04	-	.	ID=DGIL_AUG30_p1.3RHet.g322.t1; prot=CAA32198/7227/polyprotein [Drosophila melanogaster]
3RHet	1779021	1784400	0.01	+	.	ID=DGIL_AUG30_p1.3RHet.g324.t1; prot=AAA28508/7227/reverse transcriptase (put.);  putative
3RHet	1786342	1792300	0.01	-	.	ID=DGIL_AUG30_p1.3RHet.g326.t1; prot=CAB99192/7227/endonuclease/reverse transcriptase [Drosophila melanogaster]
3RHet	1811241	1813515	0.02	+	.	ID=DGIL_AUG30_p1.3RHet.g328.t1; prot=AAB49409/7368/transposase [Haematobia irritans]
3RHet	1838202	1838930	0.04	-	.	ID=DGIL_AUG30_p1.3RHet.g338.t1; prot=NP_001104441/7227/CG41392 CG41392-PA [Drosophila melanogaster]
3RHet	1840401	1841515	0.14	+	.	ID=DGIL_AUG30_p1.3RHet.g340.t1; prot=AAA28600/7244/reverse transcriptase endonuclease
3RHet	1866512	1867230	0.11	-	.	ID=DGIL_AUG30_p1.3RHet.g345.t1; prot=NP_001015277/7227/CG40138 CG40138-PA [Drosophila melanogaster]
3RHet	1873941	1874535	0.33	+	.	ID=DGIL_AUG30_p1.3RHet.g355.t1; est=AI108637; prot=AAM50939/7227/LP09838p [Drosophila melanogaster]
3RHet	1874892	1875380	0.1	-	.	ID=DGIL_AUG30_p1.3RHet.g357.t1; prot=S18211/7244/hypothetical protein 2 - fruit fly (Drosophila virilis) retrotransposon Ulysses
3RHet	1884326	1887660	0.05	-	.	ID=DGIL_AUG30_p1.3RHet.g361.t1; est=EC079671; prot=AAC28743/7213/pol-like protein [Ceratitis capitata]
3RHet	1904392	1909130	0.29	-	.	ID=DGIL_AUG30_p1.3RHet.g366.t1; prot=AAN87269/7227/ORF [Drosophila melanogaster]
3RHet	1909542	1910150	0.54	-	.	ID=DGIL_AUG30_p1.3RHet.g367.t1; prot=AAN87269/7227/ORF [Drosophila melanogaster]
3RHet	1912031	1922735	0.01	+	.	ID=DGIL_AUG30_p1.3RHet.g369.t1; est=EC252828; prot=CAA04048/7227/Envelope protein [Drosophila melanogaster]
3RHet	1927801	1928316	0.15	+	.	ID=DGIL_AUG30_p1.3RHet.g371.t1; prot=NP_001015306/7227/CG40116 CG40116-PA [Drosophila melanogaster]
3RHet	1928792	1929130	0.23	-	.	ID=DGIL_AUG30_p1.3RHet.g373.t1; prot=ZP_00373877/307502/Zinc knuckle domain protein [Wolbachia endosymbiont of Drosophila ananassae]
3RHet	1930632	1930970	0.73	-	.	ID=DGIL_AUG30_p1.3RHet.g375.t1; prot=NP_001104443/7227/CG41280 CG41280-PA [Drosophila melanogaster]
3RHet	1937955	1938609	0.25	+	.	ID=DGIL_AUG30_p1.3RHet.g379.t1; prot=XP_001343909/7955/PREDICTED: similar to transposase [Danio rerio]
3RHet	1952396	1953174	0.06	-	.	ID=DGIL_AUG30_p1.3RHet.g386.t1; prot=NP_001015295/7227/CG40122 CG40122-PA [Drosophila melanogaster]
3RHet	1956535	1956859	0.32	+	.	ID=DGIL_AUG30_p1.3RHet.g388.t1; prot=CAA65152/7227/orf [Drosophila melanogaster]
3RHet	1968846	1974644	0.01	-	.	ID=DGIL_AUG30_p1.3RHet.g400.t1; prot=ABI48303/7227/pol protein [Drosophila melanogaster]
3RHet	1974815	1976675	0.05	+	.	ID=DGIL_AUG30_p1.3RHet.g401.t1; prot=Q9NBX4/7227/Probable RNA-directed DNA polymerase from transposon X-element (Reverse transcriptase)
3RHet	1989713	1990054	0.56	-	.	ID=DGIL_AUG30_p1.3RHet.g405.t1; prot=AAK84933/7227/SD02026p [Drosophila melanogaster]
3RHet	1990109	1991124	0.06	-	.	ID=DGIL_AUG30_p1.3RHet.g406.t1; est=BG632727; prot=CAA81643/7227/blastopia polyprotein [Drosophila melanogaster]
3RHet	1996205	1996699	0.53	+	.	ID=DGIL_AUG30_p1.3RHet.g407.t1; prot=P21328/7227/RNA-directed DNA polymerase from mobile element jockey (Reverse transcriptase)
3RHet	2002856	2006725	0.19	-	.	ID=DGIL_AUG30_p2.3RHet.g26.t1; prot=ZP_00373813/307502/reverse transcriptase polyprotein [Wolbachia endosymbiont of Drosophila ananassae]
3RHet	2007897	2009645	0.01	-	.	ID=DGIL_AUG30_p2.3RHet.g27.t1; prot=ZP_00373731/307502/gag protein [Wolbachia endosymbiont of Drosophila ananassae]
3RHet	2009846	2016883	0.02	+	.	ID=DGIL_AUG30_p2.3RHet.g28.t1; prot=AAL25501/7227/SD04061p [Drosophila melanogaster]
3RHet	2030802	2037195	0.03	-	.	ID=DGIL_AUG30_p2.3RHet.g31.t1; prot=Q9NBX4/7227/Probable RNA-directed DNA polymerase from transposon X-element (Reverse transcriptase)
3RHet	2072466	2073441	0.09	+	.	ID=DGIL_AUG30_p2.3RHet.g34.t1; est=BI604369,BI626413,BI626567; prot=NP_001104457/7227/CG41335 CG41335-PA [Drosophila melanogaster]
3RHet	2073556	2086170	0.02	+	.	ID=DGIL_AUG30_p2.3RHet.g35.t1; prot=NP_001104021/7227/CG41328 CG41328-PA [Drosophila melanogaster]
3RHet	2088246	2091980	0.05	+	.	ID=DGIL_AUG30_p2.3RHet.g36.t1; prot=CAB99192/7227/endonuclease/reverse transcriptase [Drosophila melanogaster]
3RHet	2097156	2100560	0.06	+	.	ID=DGIL_AUG30_p2.3RHet.g41.t1; est=BF493075,BI622700,CK130441; prot=AAL90009/7227/AT07338p [Drosophila melanogaster]
3RHet	2106306	2108861	0.16	+	.	ID=DGIL_AUG30_p2.3RHet.g46.t1; prot=AAM11674/7227/pol protein [Drosophila melanogaster]
3RHet	2110582	2112975	0.02	-	.	ID=DGIL_AUG30_p2.3RHet.g47.t1; est=EC267285; prot=CAA65152/7227/orf [Drosophila melanogaster]
3RHet	2114326	2117499	0.58	+	.	ID=DGIL_AUG30_p2.3RHet.g48.t1; prot=AAM11674/7227/pol protein [Drosophila melanogaster]
3RHet	2128860	2130665	0.48	-	.	ID=DGIL_AUG30_p2.3RHet.g49.t1; prot=ZP_00373812/307502/putative retrovirus-like env glycoprotein [Wolbachia endosymbiont of Drosophila ananassae]
3RHet	2130714	2131525	0.21	-	.	ID=DGIL_AUG30_p2.3RHet.g50.t1; prot=ZP_00373813/307502/reverse transcriptase polyprotein [Wolbachia endosymbiont of Drosophila ananassae]
3RHet	2156273	2157001	0.09	-	.	ID=DGIL_AUG30_p2.3RHet.g56.t1; prot=NP_001104160/7227/CG40924 CG40924-PA [Drosophila melanogaster]
3RHet	2171582	2174214	0.18	+	.	ID=DGIL_AUG30_p2.3RHet.g61.t1; prot=CAB99191/7227/gag-like protein [Drosophila melanogaster]
3RHet	2176602	2182170	0.08	+	.	ID=DGIL_AUG30_p2.3RHet.g63.t1; prot=CAB99191/7227/gag-like protein [Drosophila melanogaster]
3RHet	2201302	2203096	0.02	+	.	ID=DGIL_AUG30_p2.3RHet.g67.t1; prot=CAD32253/7227/gag-pol polyprotein precursor;  hypothetical protein [Drosophila melanogaster]
3RHet	2203412	2203992	0.04	+	.	ID=DGIL_AUG30_p2.3RHet.g68.t1; prot=CAD32253/7227/gag-pol polyprotein precursor;  hypothetical protein [Drosophila melanogaster]
3RHet	2210972	2215554	0.13	+	.	ID=DGIL_AUG30_p2.3RHet.g71.t1; prot=NP_001104081/7227/CG41554 CG41554-PA [Drosophila melanogaster]
3RHet	2263910	2267851	0.02	-	.	ID=DGIL_AUG30_p2.3RHet.g72.t1; prot=AAK52055/7227/RNA-directed DNA polymerase [Drosophila melanogaster]
3RHet	2268102	2270118	0.07	+	.	ID=DGIL_AUG30_p2.3RHet.g73.t1; prot=CAA32198/7227/polyprotein [Drosophila melanogaster]
3RHet	2273385	2278571	0.01	-	.	ID=DGIL_AUG30_p2.3RHet.g74.t1; prot=AAK52055/7227/RNA-directed DNA polymerase [Drosophila melanogaster]
3RHet	2278682	2279356	0.11	+	.	ID=DGIL_AUG30_p2.3RHet.g75.t1; prot=NP_001104441/7227/CG41392 CG41392-PA [Drosophila melanogaster]
3RHet	2279733	2283061	0.09	-	.	ID=DGIL_AUG30_p2.3RHet.g76.t1; prot=NP_001015171/7227/CG41066 CG41066-PA [Drosophila melanogaster]
3RHet	2283121	2284521	0.07	-	.	ID=DGIL_AUG30_p2.3RHet.g77.t1; prot=NP_001104022/7227/CG40091 CG40091-PC [Drosophila melanogaster]
3RHet	2290044	2290741	0.05	-	.	ID=DGIL_AUG30_p2.3RHet.g79.t1; prot=CAD32253/7227/gag-pol polyprotein precursor;  hypothetical protein [Drosophila melanogaster]
3RHet	2298018	2299391	0.12	-	.	ID=DGIL_AUG30_p2.3RHet.g81.t1; prot=AAM51136/7227/SD26211p [Drosophila melanogaster]
3RHet	2299474	2300031	0.12	-	.	ID=DGIL_AUG30_p2.3RHet.g82.t1; est=EL877311; prot=S00953/7227/gag protein - fruit fly (Drosophila melanogaster) transposon 1731
3RHet	2305244	2307351	0.02	-	.	ID=DGIL_AUG30_p2.3RHet.g84.t1; prot=Q9NBX4/7227/Probable RNA-directed DNA polymerase from transposon X-element (Reverse transcriptase)
3RHet	2310282	2311311	0.04	+	.	ID=DGIL_AUG30_p2.3RHet.g86.t1; prot=AAK52058/7227/RNA-directed DNA polymerase [Drosophila melanogaster]
3RHet	2312619	2335111	0.01	-	.	ID=DGIL_AUG30_p2.3RHet.g87.t1; prot=CAB99192/7227/endonuclease/reverse transcriptase [Drosophila melanogaster]
3RHet	2337312	2338708	0.18	+	.	ID=DGIL_AUG30_p2.3RHet.g89.t1; prot=AAK77263/7227/GH03753p [Drosophila melanogaster]
3RHet	2338733	2339781	0.06	-	.	ID=DGIL_AUG30_p2.3RHet.g90.t1; prot=AAT47767/7227/RE14563p [Drosophila melanogaster]
3RHet	2341926	2346460	0.02	-	.	ID=DGIL_AUG30_p2.3RHet.g92.t1; est=BI575195,BI608615,BI621930; prot=XP_001601180/7425/PREDICTED: similar to pol polyprotein [Nasonia vitripennis]
3RHet	2346930	2347440	0.04	-	.	ID=DGIL_AUG30_p2.3RHet.g93.t1; prot=NP_001015317/7227/CG40103 CG40103-PA [Drosophila melanogaster]
3RHet	2351801	2353341	0.1	+	.	ID=DGIL_AUG30_p2.3RHet.g95.t1; prot=AAL25501/7227/SD04061p [Drosophila melanogaster]
3RHet	2355585	2356350	0.06	-	.	ID=DGIL_AUG30_p2.3RHet.g96.t1; prot=AAK77263/7227/GH03753p [Drosophila melanogaster]
3RHet	2361331	2361985	0.29	+	.	ID=DGIL_AUG30_p2.3RHet.g98.t1; prot=NP_001104130/7227/CG41587 CG41587-PA [Drosophila melanogaster]
3RHet	2369161	2374735	0.09	+	.	ID=DGIL_AUG30_p2.3RHet.g100.t1; prot=AAA28508/7227/reverse transcriptase (put.);  putative
3RHet	2491883	2494300	0.02	-	.	ID=DGIL_AUG30_p2.3RHet.g114.t1; prot=ZP_00373813/307502/reverse transcriptase polyprotein [Wolbachia endosymbiont of Drosophila ananassae]
3RHet	2497081	2501160	0.06	-	.	ID=DGIL_AUG30_p2.3RHet.g116.t1; prot=CAA08807/7227/Pol protein [Drosophila melanogaster]
X	37468	38565	0.47	-	.	ID=DGIL_AUG30_p1.X.g10.t1; est=EC064345,EC087244,EC207230,EC226575,EC248440,EC249111,AI513334,CO178234,CO296735,CO296739,CO308505,CO312815; prot=AAL13355/7227/GH26506p [Drosophila melanogaster]
X	372884	373232	0.2	-	.	ID=DGIL_AUG30_p1.X.g119.t1; prot=NP_788851/7227/CG18166 CG18166-PB, isoform B [Drosophila melanogaster]
X	431503	434377	0.04	+	.	ID=DGIL_AUG30_p1.X.g153.t1; prot=AAT94514/7227/GH17517p [Drosophila melanogaster]
X	538113	538747	0.44	+	.	ID=DGIL_AUG30_p1.X.g207.t1; est=EC221798; prot=AAL92713/7227/CG13367 truncation 1 [Drosophila melanogaster]
X	679502	680875	0.85	+	.	ID=DGIL_AUG30_p1.X.g283.t1; est=AI257485,AI257485,AI257648,AI258474,AI258474; prot=NP_569858/7227/Protein O-mannosyltransferase 2 CG12311-PA [Drosophila melanogaster]
X	680942	681716	0.29	+	.	ID=DGIL_AUG30_p1.X.g284.t1; prot=NP_569858/7227/Protein O-mannosyltransferase 2 CG12311-PA [Drosophila melanogaster]
X	1075455	1075949	0.3	+	.	ID=DGIL_AUG30_p1.X.g522.t1; prot=CAB58081/7227/EG:BACR42I17.5 [Drosophila melanogaster]
X	1361289	1361803	0.38	+	.	ID=DGIL_AUG30_p1.X.g654.t1; est=EC090190,EC195590,EL880187,EL881073,EL881411,BI615097,CO329434; prot=AAV36849/7227/RH44622p [Drosophila melanogaster]
X	1505579	1506427	0.15	-	.	ID=DGIL_AUG30_p1.X.g762.t1; prot=XP_001715813/9606/PREDICTED: hypothetical protein [Homo sapiens]
X	1605981	1606829	0.69	-	.	ID=DGIL_AUG30_p1.X.g816.t1; prot=CAE62350/6238/Hypothetical protein CBG06427 [Caenorhabditis briggsae]
X	1796787	1797351	0.18	+	.	ID=DGIL_AUG30_p1.X.g937.t1; prot=ABN49250/7227/IP05117p [Drosophila melanogaster]
X	12357238	12357914	0.33	+	.	ID=DGIL_AUG30_p2.X.g413.t1; prot=AAY84928/7227/IP09944p [Drosophila melanogaster]
X	13197461	13199245	0.13	+	.	ID=DGIL_AUG30_p2.X.g785.t1; prot=NP_042981/32603/U88 [Human herpesvirus 6A]
X	13692072	13692813	0.09	-	.	ID=DGIL_AUG30_p2.X.g1022.t1; prot=NP_001104172/7227/CG41545 CG41545-PA [Drosophila melanogaster]
X	13708797	13716075	0.07	-	.	ID=DGIL_AUG30_p3.X.g37.t1; est=EC261991,EC262825,EC263042,EC263821,EC266604,EC267223,EC267771,BP543341,BI166152,BI235460,BI369074,BI568398,BI606557,AA695880,AA696089,more; prot=NP_572928/7227/Chloride intracellular channel CG10997-PA [Drosophila melanogaster]
X	14348222	14353696	0.18	+	.	ID=DGIL_AUG30_p3.X.g355.t1; est=EC229572,AI134784; prot=AAL25320/7227/GH12331p [Drosophila melanogaster]
X	14596165	14597689	0.5	+	.	ID=DGIL_AUG30_p3.X.g493.t1; est=EC262575,EC262575,BP555339,BP555340,CO338577,CO338577; prot=XP_308930/180454/AGAP006816-PA [Anopheles gambiae str. PEST]
X	15116799	15117532	0.85	-	.	ID=DGIL_AUG30_p3.X.g744.t1; est=EC238727,EC238727,EC238727,CO318049,CO318049,CO318049; prot=NP_727833/7227/CG32588 CG32588-PA [Drosophila melanogaster]
X	15470233	15471061	0.15	+	.	ID=DGIL_AUG30_p3.X.g953.t1; prot=NP_572960/7227/CG18313 CG18313-PA [Drosophila melanogaster]
X	15516233	15517046	0.29	+	.	ID=DGIL_AUG30_p3.X.g987.t1; prot=AAZ86743/7227/RH46383p [Drosophila melanogaster]
X	16456097	16456633	0.18	-	.	ID=DGIL_AUG30_p4.X.g357.t1; est=EC244107,AA735693,CO279481; prot=AAL39414/7227/GM09534p [Drosophila melanogaster]
X	17831187	17832140	0.22	-	.	ID=DGIL_AUG30_p5.X.g129.t1; est=AW940054; prot=AAL28146/7227/GH01566p [Drosophila melanogaster]
X	18019075	18021068	0.31	-	.	ID=DGIL_AUG30_p5.X.g239.t1; est=BI592487,BI592487,BI592487; prot=AAY55137/7227/RH10188p [Drosophila melanogaster]
X	19356652	19357330	0.32	-	.	ID=DGIL_AUG30_p5.X.g990.t1; prot=ZP_01630447/313624/indole-3-glycerol-phosphate synthase [Nodularia spumigena CCY9414]
X	19811897	19814900	0.26	-	.	ID=DGIL_AUG30_p6.X.g182.t1; prot=NP_608364/7227/CG12655 CG12655-PA [Drosophila melanogaster]
X	19826322	19828720	0.41	-	.	ID=DGIL_AUG30_p6.X.g188.t1; prot=NP_608364/7227/CG12655 CG12655-PA [Drosophila melanogaster]
X	20858756	20860240	0.07	+	.	ID=DGIL_AUG30_p6.X.g761.t1; prot=YP_001362058/266940/hypothetical protein Krad_2313 [Kineococcus radiotolerans SRS30216]
X	21124032	21124493	0.06	-	.	ID=DGIL_AUG30_p6.X.g923.t1; prot=XP_001719416/9606/PREDICTED: hypothetical protein [Homo sapiens]
X	21391838	21392545	0.05	+	.	ID=DGIL_AUG30_p6.X.g1059.t1; est=EC085126,EC206812,EC247853,CO188921,CO298073,CO309577; prot=AAX33475/7227/RE04396p [Drosophila melanogaster]
X	2103231	2103595	0.48	-	.	ID=DGIL_AUG30_p7.X.g75.t1; prot=CAA15694/7227/EG:103B4.4 [Drosophila melanogaster]
X	2171664	2175100	0.78	+	.	ID=DGIL_AUG30_p7.X.g112.t1; est=EC061322,EC065856,EC073676,EC089156,EC200298,EC202605,EC204865,EC214768,EC225021,EC225336,EC237824,EC244454,BP554396,CO195425,CO278257,more; prot=ABX00724/7227/IP08063p [Drosophila melanogaster]
X	2470938	2472512	0.14	+	.	ID=DGIL_AUG30_p7.X.g249.t1; est=EC066666,EC225875,EC230211,EC247863,EC250391,EC250392,CO178288,CO309673,CO314687,CO317564; prot=CAB72288/7227/EG:BACR25B3.3 [Drosophila melanogaster]
X	2960164	2960498	0.31	+	.	ID=DGIL_AUG30_p7.X.g517.t1; prot=AAL25411/7227/LD23922p [Drosophila melanogaster]
X	3404073	3404827	0.37	+	.	ID=DGIL_AUG30_p7.X.g763.t1; prot=AAM49782/7244/DEAD-box RNA helicase [Drosophila virilis]
X	3615592	3615876	0.97	+	.	ID=DGIL_AUG30_p7.X.g859.t1; prot=AAD55423/7227/BcDNA.GH07910 [Drosophila melanogaster]
X	3948851	3949189	0.03	-	.	ID=DGIL_AUG30_p7.X.g1039.t1; prot=AAM51991/7227/RE10847p [Drosophila melanogaster]
X	21538703	21539765	0.75	-	.	ID=DGIL_AUG30_p8.X.g25.t1; prot=AAL29132/7227/SD03311p [Drosophila melanogaster]
X	21619757	21622865	0.17	-	.	ID=DGIL_AUG30_p8.X.g30.t1; prot=AAK52055/7227/RNA-directed DNA polymerase [Drosophila melanogaster]
X	21623517	21625175	0.03	-	.	ID=DGIL_AUG30_p8.X.g32.t1; prot=AAC28744/7213/env-like protein [Ceratitis capitata]
X	21643335	21644013	0.32	-	.	ID=DGIL_AUG30_p8.X.g34.t1; prot=ZP_00373812/307502/putative retrovirus-like env glycoprotein [Wolbachia endosymbiont of Drosophila ananassae]
X	21644317	21645123	0.21	-	.	ID=DGIL_AUG30_p8.X.g35.t1; prot=ZP_00373813/307502/reverse transcriptase polyprotein [Wolbachia endosymbiont of Drosophila ananassae]
X	21649317	21658103	0.01	-	.	ID=DGIL_AUG30_p8.X.g36.t1; prot=AAC28744/7213/env-like protein [Ceratitis capitata]
X	21662023	21662673	0.01	-	.	ID=DGIL_AUG30_p8.X.g37.t1; prot=NP_001104368/7227/CG41332 CG41332-PA [Drosophila melanogaster]
X	21665135	21665893	0.19	-	.	ID=DGIL_AUG30_p8.X.g39.t1; prot=ABI48304/7227/env protein [Drosophila melanogaster]
X	21673987	21680583	0.14	-	.	ID=DGIL_AUG30_p8.X.g41.t1; prot=AAY84918/7227/IP10023p [Drosophila melanogaster]
X	22046498	22047706	0.19	+	.	ID=DGIL_AUG30_p8.X.g120.t1; prot=P21329/7221/RNA-directed DNA polymerase from mobile element jockey (Reverse transcriptase)
X	22335627	22336975	0.17	-	.	ID=DGIL_AUG30_p8.X.g248.t1; prot=NP_001104130/7227/CG41587 CG41587-PA [Drosophila melanogaster]
X	6223750	6226279	0.09	+	.	ID=DGIL_AUG30_p10.X.g178.t1; est=EC063175,EC079961,EC082627,EC233703,EC260759,BF503210,AA978768,BI167449,BI214670,BI216816,BI228205,BI229221,BI229229,BI230443,BI232277,more; prot=XP_001119931/7460/PREDICTED: hypothetical protein [Apis mellifera]
X	6257078	6257399	0.98	-	.	ID=DGIL_AUG30_p10.X.g195.t1; prot=NP_511060/7227/swallow CG3429-PA [Drosophila melanogaster]
X	7083704	7084418	0.06	+	.	ID=DGIL_AUG30_p10.X.g606.t1; est=BI566207,BI576765,BI586189,BI606901,BI608138,BI610751,BI620587; prot=AAZ41757/7227/RH73753p [Drosophila melanogaster]
X	7225308	7226739	0.09	-	.	ID=DGIL_AUG30_p10.X.g700.t1; prot=AAO72734/35570/antigen 5 precursor [Stomoxys calcitrans]
X	7346710	7347483	0.17	-	.	ID=DGIL_AUG30_p10.X.g778.t1; est=CO181918,CO181918,CO193011,CO193011,CO193011; prot=NP_001097980/7227/CG34300 CG34300-PA [Drosophila melanogaster]
X	7570286	7570615	0.88	+	.	ID=DGIL_AUG30_p10.X.g919.t1; est=EC216674,EC219689,EC226547,CO261864,CO308106,CO332923; prot=AAM11053/7227/GH10590p [Drosophila melanogaster]
X	7858847	7861575	0.68	-	.	ID=DGIL_AUG30_p11.X.g41.t1; est=AA696022,AW941236; prot=ABV82201/7227/GH25996p [Drosophila melanogaster]
X	7893879	7895245	0.03	-	.	ID=DGIL_AUG30_p11.X.g55.t1; prot=AAB35286/10090/nuclear localization signal binding protein [Mus musculus]
X	8812111	8812755	0.03	+	.	ID=DGIL_AUG30_p11.X.g504.t1; est=AA567767; prot=AAR31135/7227/HL01742p [Drosophila melanogaster]
X	8902041	8907557	0.12	+	.	ID=DGIL_AUG30_p11.X.g563.t1; est=AI387146; prot=ABC86476/7227/IP03609p [Drosophila melanogaster]
X	8920341	8921345	0.41	+	.	ID=DGIL_AUG30_p11.X.g572.t1; est=EC067587,EC070099,EC072195,EC073005,EC076742,EC081347,EC214140,EC222163,EC236037,EC246834,AA698811,CO179621,CO281221,CO288585,CO321071,more; prot=AAM11128/7227/HL05735p [Drosophila melanogaster]
X	8928766	8929730	0.04	-	.	ID=DGIL_AUG30_p11.X.g576.t1; est=AA802785; prot=AAL28468/7227/GM06310p [Drosophila melanogaster]
X	9017517	9018550	0.53	-	.	ID=DGIL_AUG30_p11.X.g614.t1; est=EC069082,EC069985,EC194683,EC208253,EC213157,EC233128,EC244231,EC258673,CK135598,CO263626,CO264416,CO278224,CO288721,CO306920,CO341777; prot=AAM51035/7227/RH56795p [Drosophila melanogaster]
X	9153279	9154489	0.22	-	.	ID=DGIL_AUG30_p11.X.g679.t1; prot=NP_727335/7227/CG32703 CG32703-PA [Drosophila melanogaster]
X	11480339	11481483	0.11	+	.	ID=DGIL_AUG30_p12.X.g805.t1; prot=ABV82393/7227/RE24179p [Drosophila melanogaster]
X	11481529	11483483	0.12	+	.	ID=DGIL_AUG30_p12.X.g806.t1; est=BI216896; prot=ABV82393/7227/RE24179p [Drosophila melanogaster]
U	5855	8684	0.04	+	.	ID=DGIL_AUG30_p1.U.g1.t1; prot=AAM51136/7227/SD26211p [Drosophila melanogaster]
U	11280	11955	0.13	-	.	ID=DGIL_AUG30_p1.U.g2.t1; prot=AAN87269/7227/ORF [Drosophila melanogaster]
U	17026	17593	0.07	+	.	ID=DGIL_AUG30_p1.U.g5.t1; prot=CAB39732/7264/Gag protein [Drosophila buzzatii]
U	22346	23615	0.19	-	.	ID=DGIL_AUG30_p1.U.g8.t1; prot=AAC28744/7213/env-like protein [Ceratitis capitata]
U	23941	27335	0.04	-	.	ID=DGIL_AUG30_p1.U.g9.t1; prot=AAC28743/7213/pol-like protein [Ceratitis capitata]
U	27392	27815	0.13	-	.	ID=DGIL_AUG30_p1.U.g10.t1; prot=AAC28742/7213/gag-like protein [Ceratitis capitata]
U	35136	37449	0.55	+	.	ID=DGIL_AUG30_p1.U.g15.t1; prot=ABI48303/7227/pol protein [Drosophila melanogaster]
U	43986	46360	0.12	+	.	ID=DGIL_AUG30_p1.U.g19.t1; est=AI389451; prot=CAB99192/7227/endonuclease/reverse transcriptase [Drosophila melanogaster]
U	46436	46955	0.05	+	.	ID=DGIL_AUG30_p1.U.g20.t1; prot=NP_001104116/7227/CG40624 CG40624-PA [Drosophila melanogaster]
U	55927	60885	0.01	-	.	ID=DGIL_AUG30_p1.U.g21.t1; prot=CAA32198/7227/polyprotein [Drosophila melanogaster]
U	60937	63855	0.03	-	.	ID=DGIL_AUG30_p1.U.g22.t1; prot=CAA32198/7227/polyprotein [Drosophila melanogaster]
U	65496	65947	0.25	+	.	ID=DGIL_AUG30_p1.U.g24.t1; prot=ZP_00373907/307502/envelope protein [Wolbachia endosymbiont of Drosophila ananassae]
U	115676	121052	0.02	+	.	ID=DGIL_AUG30_p1.U.g30.t1; prot=AAM51136/7227/SD26211p [Drosophila melanogaster]
U	141931	142505	0.08	-	.	ID=DGIL_AUG30_p1.U.g35.t1; prot=NP_609998/7227/CG10631 CG10631-PA [Drosophila melanogaster]
U	161404	169088	0.05	-	.	ID=DGIL_AUG30_p1.U.g36.t1; prot=AAM11674/7227/pol protein [Drosophila melanogaster]
U	180659	181063	0.11	+	.	ID=DGIL_AUG30_p1.U.g37.t1; prot=NP_001036646/7227/CG41458 CG41458-PA [Drosophila melanogaster]
U	189599	190500	0.25	+	.	ID=DGIL_AUG30_p1.U.g42.t1; prot=ZP_00373731/307502/gag protein [Wolbachia endosymbiont of Drosophila ananassae]
U	211299	214133	0.1	+	.	ID=DGIL_AUG30_p1.U.g50.t1; prot=AAK52055/7227/RNA-directed DNA polymerase [Drosophila melanogaster]
U	214579	216085	0.04	+	.	ID=DGIL_AUG30_p1.U.g51.t1; prot=AAX28844/7227/reverse transcriptase [Drosophila melanogaster]
U	216689	217873	0.09	+	.	ID=DGIL_AUG30_p1.U.g52.t1; prot=AAX28844/7227/reverse transcriptase [Drosophila melanogaster]
U	217929	218596	0.12	+	.	ID=DGIL_AUG30_p1.U.g53.t1; prot=NP_001104047/7227/CG41489 CG41489-PA [Drosophila melanogaster]
U	223174	224578	0.04	-	.	ID=DGIL_AUG30_p1.U.g56.t1; prot=AAK84933/7227/SD02026p [Drosophila melanogaster]
U	235929	236423	0.32	+	.	ID=DGIL_AUG30_p1.U.g62.t1; prot=XP_001188191/7668/PREDICTED: similar to fizzy-related protein [Strongylocentrotus purpuratus]
U	236479	237078	0.12	+	.	ID=DGIL_AUG30_p1.U.g63.t1; prot=XP_001201290/7668/PREDICTED: similar to retrotransposon protein, putative, Ty3-gypsy subclass [Strongylocentrotus purpuratus]
U	237129	237978	0.3	+	.	ID=DGIL_AUG30_p1.U.g64.t1; prot=XP_001201290/7668/PREDICTED: similar to retrotransposon protein, putative, Ty3-gypsy subclass [Strongylocentrotus purpuratus]
U	238781	239218	0.05	-	.	ID=DGIL_AUG30_p1.U.g65.t1; prot=CAA08806/7227/Gag protein [Drosophila melanogaster]
U	282320	284158	0.09	-	.	ID=DGIL_AUG30_p1.U.g78.t1; est=EL873030; prot=CAD32253/7227/gag-pol polyprotein precursor;  hypothetical protein [Drosophila melanogaster]
U	285999	294671	0.02	+	.	ID=DGIL_AUG30_p1.U.g79.t1; prot=AAK52055/7227/RNA-directed DNA polymerase [Drosophila melanogaster]
U	294678	296128	0.27	-	.	ID=DGIL_AUG30_p1.U.g80.t1; prot=AAY55125/7227/IP07237p [Drosophila melanogaster]
U	296180	297488	0.05	-	.	ID=DGIL_AUG30_p1.U.g81.t1; prot=ABD72267/7264/pol polyprotein [Drosophila buzzatii]
U	322120	324628	0.01	-	.	ID=DGIL_AUG30_p1.U.g84.t1; prot=XP_793701/7668/PREDICTED: similar to transposase [Strongylocentrotus purpuratus]
U	400608	402392	0.08	+	.	ID=DGIL_AUG30_p1.U.g95.t1; prot=AAA28508/7227/reverse transcriptase (put.);  putative
U	406428	407363	0.05	+	.	ID=DGIL_AUG30_p1.U.g98.t1; prot=ABI48302/7227/gag protein [Drosophila melanogaster]
U	411942	412947	0.01	-	.	ID=DGIL_AUG30_p1.U.g101.t1; prot=AAO67558/7244/Gag protein [Drosophila virilis]
U	416177	416827	0.29	-	.	ID=DGIL_AUG30_p1.U.g102.t1; prot=CAA65152/7227/orf [Drosophila melanogaster]
U	425289	425867	0.34	-	.	ID=DGIL_AUG30_p1.U.g104.t1; prot=NP_001015233/7227/CG40153 CG40153-PA [Drosophila melanogaster]
U	467988	469447	0.13	+	.	ID=DGIL_AUG30_p1.U.g110.t1; prot=AAC28743/7213/pol-like protein [Ceratitis capitata]
U	519654	523985	0.05	+	.	ID=DGIL_AUG30_p1.U.g119.t1; prot=AAN34653/7227/unknown [Drosophila melanogaster]
U	524025	527643	0.05	-	.	ID=DGIL_AUG30_p1.U.g120.t1; prot=Q9NBX5/7227/Nucleic-acid-binding protein from transposon X-element
U	555414	556204	0.06	+	.	ID=DGIL_AUG30_p1.U.g126.t1; prot=ZP_00374015/307502/hypothetical protein WwAna0364 [Wolbachia endosymbiont of Drosophila ananassae]
U	565774	566405	0.09	+	.	ID=DGIL_AUG30_p1.U.g129.t1; prot=ZP_00373653/307502/indora [Wolbachia endosymbiont of Drosophila ananassae]
U	611974	612463	0.07	-	.	ID=DGIL_AUG30_p1.U.g139.t1; prot=NP_001104022/7227/CG40091 CG40091-PC [Drosophila melanogaster]
U	632124	634866	0.01	+	.	ID=DGIL_AUG30_p1.U.g142.t1; est=BI576828,BI588225,BI588234,BI588998,BI617540; prot=CAA32198/7227/polyprotein [Drosophila melanogaster]
U	656685	657133	0.24	-	.	ID=DGIL_AUG30_p1.U.g144.t1; prot=P10394/7227/Retrovirus-related Pol polyprotein from transposon 412 [Includes: Protease ;  Reverse transcriptase ;  Endonuclease]
U	658654	666711	0.16	+	.	ID=DGIL_AUG30_p1.U.g145.t1; est=BI355868; prot=CAB99192/7227/endonuclease/reverse transcriptase [Drosophila melanogaster]
U	667034	669416	0.04	+	.	ID=DGIL_AUG30_p1.U.g146.t1; prot=AAM51136/7227/SD26211p [Drosophila melanogaster]
U	673748	677727	0.06	+	.	ID=DGIL_AUG30_p1.U.g147.t1; prot=CAA65152/7227/orf [Drosophila melanogaster]
U	819138	822803	0.07	+	.	ID=DGIL_AUG30_p1.U.g150.t1; prot=CAD32253/7227/gag-pol polyprotein precursor;  hypothetical protein [Drosophila melanogaster]
U	822998	825918	0.03	+	.	ID=DGIL_AUG30_p1.U.g151.t1; prot=CAD32253/7227/gag-pol polyprotein precursor;  hypothetical protein [Drosophila melanogaster]
U	832308	834386	0.12	+	.	ID=DGIL_AUG30_p1.U.g152.t1; prot=ZP_00373731/307502/gag protein [Wolbachia endosymbiont of Drosophila ananassae]
U	840732	841197	0.05	+	.	ID=DGIL_AUG30_p1.U.g154.t1; prot=AAK52060/7227/gag protein [Drosophila melanogaster]
U	851014	853831	0.11	-	.	ID=DGIL_AUG30_p1.U.g157.t1; prot=ZP_00373731/307502/gag protein [Wolbachia endosymbiont of Drosophila ananassae]
U	853992	859106	0.01	+	.	ID=DGIL_AUG30_p1.U.g158.t1; prot=Q9NBX4/7227/Probable RNA-directed DNA polymerase from transposon X-element (Reverse transcriptase)
U	873969	876281	0.1	-	.	ID=DGIL_AUG30_p1.U.g159.t1; est=BI610451,BI623920; prot=P04146/7227/Copia protein (Gag-int-pol protein) [Contains: Copia VLP protein;  Copia protease ]
U	878932	879393	0.82	+	.	ID=DGIL_AUG30_p1.U.g161.t1; prot=Q967S7/7227/Retrovirus-related Gag polyprotein from transposon HMS-Beagle
U	879452	882116	0.34	+	.	ID=DGIL_AUG30_p1.U.g162.t1; prot=AAC28744/7213/env-like protein [Ceratitis capitata]
U	886779	888621	0.01	-	.	ID=DGIL_AUG30_p1.U.g163.t1; prot=NP_001104113/7227/CG40505 CG40505-PA [Drosophila melanogaster]
U	902882	906666	0.03	+	.	ID=DGIL_AUG30_p1.U.g165.t1; prot=XP_794717/7668/PREDICTED: similar to transposase [Strongylocentrotus purpuratus]
U	918589	919911	0.07	-	.	ID=DGIL_AUG30_p1.U.g169.t1; prot=AAN34649/7227/gag protein [Drosophila melanogaster]
U	919959	920401	0.17	-	.	ID=DGIL_AUG30_p1.U.g170.t1; prot=AAN34649/7227/gag protein [Drosophila melanogaster]
U	932043	933581	0.34	-	.	ID=DGIL_AUG30_p1.U.g174.t1; prot=AAN34649/7227/gag protein [Drosophila melanogaster]
U	933692	938581	0.11	-	.	ID=DGIL_AUG30_p1.U.g175.t1; prot=CAB99191/7227/gag-like protein [Drosophila melanogaster]
U	940704	941271	0.06	-	.	ID=DGIL_AUG30_p1.U.g176.t1; prot=AAN34649/7227/gag protein [Drosophila melanogaster]
U	944845	945241	0.31	-	.	ID=DGIL_AUG30_p1.U.g178.t1; prot=AAN34649/7227/gag protein [Drosophila melanogaster]
U	945297	945761	0.22	-	.	ID=DGIL_AUG30_p1.U.g179.t1; prot=AAN34649/7227/gag protein [Drosophila melanogaster]
U	945877	951151	0.01	-	.	ID=DGIL_AUG30_p1.U.g180.t1; prot=CAA35586/7227/ORF1 for putative RNA binding protein [Drosophila melanogaster]
U	954182	956396	0.2	+	.	ID=DGIL_AUG30_p1.U.g181.t1; prot=ZP_00373907/307502/envelope protein [Wolbachia endosymbiont of Drosophila ananassae]
U	956913	961131	0.16	-	.	ID=DGIL_AUG30_p1.U.g183.t1; prot=CAA32198/7227/polyprotein [Drosophila melanogaster]
U	961660	963311	0.13	-	.	ID=DGIL_AUG30_p1.U.g184.t1; prot=AAX33364/7227/RH66770p [Drosophila melanogaster]
U	970172	975180	0.02	+	.	ID=DGIL_AUG30_p1.U.g186.t1; prot=NP_001104047/7227/CG41489 CG41489-PA [Drosophila melanogaster]
U	980262	985589	0.03	+	.	ID=DGIL_AUG30_p1.U.g188.t1; est=BP555679; prot=NP_001104047/7227/CG41489 CG41489-PA [Drosophila melanogaster]
U	989412	990917	0.03	+	.	ID=DGIL_AUG30_p1.U.g191.t1; est=BI621573; prot=Q967S7/7227/Retrovirus-related Gag polyprotein from transposon HMS-Beagle
U	992722	999626	0.01	+	.	ID=DGIL_AUG30_p1.U.g193.t1; prot=ABY50130/7240/Gag-like protein [Drosophila simulans]
U	1000792	1001836	0.08	+	.	ID=DGIL_AUG30_p1.U.g194.t1; prot=ZP_00373907/307502/envelope protein [Wolbachia endosymbiont of Drosophila ananassae]
U	1001892	1002892	0.03	+	.	ID=DGIL_AUG30_p1.U.g195.t1; prot=NP_001015228/7227/CG40359 CG40359-PA [Drosophila melanogaster]
U	1012182	1012826	0.17	+	.	ID=DGIL_AUG30_p1.U.g197.t1; prot=P10403/7227/Retrovirus-related Env polyprotein from transposon gypsy
U	1015722	1016236	0.16	+	.	ID=DGIL_AUG30_p1.U.g199.t1; prot=NP_001104013/7227/CG40339 CG40339-PB, isoform B [Drosophila melanogaster]
U	1018682	1024256	0.02	+	.	ID=DGIL_AUG30_p1.U.g201.t1; prot=AAC28744/7213/env-like protein [Ceratitis capitata]
U	1027591	1028195	0.33	+	.	ID=DGIL_AUG30_p1.U.g202.t1; prot=ZP_00373813/307502/reverse transcriptase polyprotein [Wolbachia endosymbiont of Drosophila ananassae]
U	1031101	1033557	0.06	+	.	ID=DGIL_AUG30_p1.U.g204.t1; prot=AAK52057/7227/gag protein [Drosophila melanogaster]
U	1035751	1041496	0.07	+	.	ID=DGIL_AUG30_p1.U.g205.t1; prot=AAK52055/7227/RNA-directed DNA polymerase [Drosophila melanogaster]
U	1042791	1044225	0.02	+	.	ID=DGIL_AUG30_p1.U.g206.t1; est=BG639587,BG639593; prot=CAB99192/7227/endonuclease/reverse transcriptase [Drosophila melanogaster]
U	1054483	1061510	0.01	-	.	ID=DGIL_AUG30_p1.U.g211.t1; est=BI589829,BI589840; prot=AAK52055/7227/RNA-directed DNA polymerase [Drosophila melanogaster]
U	1106131	1107720	0.06	-	.	ID=DGIL_AUG30_p1.U.g217.t1; prot=XP_001602348/7425/PREDICTED: similar to BEL12_AG transposon polyprotein [Nasonia vitripennis]
U	1140051	1150777	0.06	+	.	ID=DGIL_AUG30_p1.U.g219.t1; prot=AAM51136/7227/SD26211p [Drosophila melanogaster]
U	1157758	1159840	0.01	-	.	ID=DGIL_AUG30_p1.U.g220.t1; est=EC072136,EC248981,CO303395,CO328532; prot=AAC28744/7213/env-like protein [Ceratitis capitata]
U	1159888	1163840	0.05	-	.	ID=DGIL_AUG30_p1.U.g221.t1; prot=Q967S7/7227/Retrovirus-related Gag polyprotein from transposon HMS-Beagle
U	1172455	1173690	0.18	-	.	ID=DGIL_AUG30_p1.U.g225.t1; est=BI629012; prot=XP_001599568/7425/PREDICTED: similar to ENSANGP00000012343 [Nasonia vitripennis]
U	1197720	1204691	0.03	+	.	ID=DGIL_AUG30_p1.U.g232.t1; prot=AAY84915/7227/IP10123p [Drosophila melanogaster]
U	1208086	1209469	0.21	-	.	ID=DGIL_AUG30_p1.U.g235.t1; prot=AAB66824/7244/Tel1 [Drosophila virilis]
U	1211594	1217679	0.1	-	.	ID=DGIL_AUG30_p1.U.g236.t1; prot=ABD72267/7264/pol polyprotein [Drosophila buzzatii]
U	1222740	1223439	0.53	-	.	ID=DGIL_AUG30_p1.U.g239.t1; prot=AAC36179/3702/unknown protein [Arabidopsis thaliana]
U	1225700	1229414	0.01	+	.	ID=DGIL_AUG30_p1.U.g241.t1; est=EC057721,EC081432,EC258623,CO287112,CO344967; prot=ABS71025/7113/putative DNA-mediated transposase [Helicoverpa zea]
U	1229421	1229879	0.04	-	.	ID=DGIL_AUG30_p1.U.g242.t1; prot=AAY55398/7227/IP08451p [Drosophila melanogaster]
U	1239100	1240154	0.35	+	.	ID=DGIL_AUG30_p1.U.g243.t1; est=EL878619,EL878798,EL878893,EL878894; prot=AAY55398/7227/IP08451p [Drosophila melanogaster]
U	1244440	1244930	0.1	+	.	ID=DGIL_AUG30_p1.U.g246.t1; prot=AAO25747/7237/Tc1-like transposase [Drosophila pseudoobscura]
U	1250930	1251574	0.49	+	.	ID=DGIL_AUG30_p1.U.g249.t1; est=EC082721,CO270296,CO321048; prot=XP_966845/7070/PREDICTED: similar to Y48G1BM.4 [Tribolium castaneum]
U	1257770	1259781	0.05	+	.	ID=DGIL_AUG30_p1.U.g251.t1; est=CK135328; prot=CAA25884/7227/unnamed protein product [Drosophila melanogaster]
U	1262321	1275589	0.01	-	.	ID=DGIL_AUG30_p1.U.g252.t1; est=BI568566,BI607372; prot=AAA28508/7227/reverse transcriptase (put.);  putative
U	1285776	1291929	0.05	-	.	ID=DGIL_AUG30_p1.U.g255.t1; prot=AAM11673/7227/gag protein [Drosophila melanogaster]
U	1293530	1295402	0.04	+	.	ID=DGIL_AUG30_p1.U.g256.t1; est=BP552083,BP547037; prot=P20828/7227/Retrovirus-related Gag polyprotein from transposon 297
U	1331288	1334899	0.11	-	.	ID=DGIL_AUG30_p1.U.g263.t1; prot=ABP48078/7217/putative gag-pol protein [Drosophila ananassae]
U	1335430	1339812	0.08	+	.	ID=DGIL_AUG30_p1.U.g264.t1; prot=ABS71025/7113/putative DNA-mediated transposase [Helicoverpa zea]
U	1370273	1392121	0.01	-	.	ID=DGIL_AUG30_p1.U.g271.t1; prot=CAB99192/7227/endonuclease/reverse transcriptase [Drosophila melanogaster]
U	1393850	1395401	0.04	-	.	ID=DGIL_AUG30_p1.U.g273.t1; prot=S18210/7244/hypothetical protein 1 - fruit fly (Drosophila virilis) retrotransposon Ulysses
U	1426812	1427181	0.42	+	.	ID=DGIL_AUG30_p1.U.g278.t1; prot=Q967S7/7227/Retrovirus-related Gag polyprotein from transposon HMS-Beagle
U	1427422	1428991	0.16	+	.	ID=DGIL_AUG30_p1.U.g279.t1; prot=Q967S7/7227/Retrovirus-related Gag polyprotein from transposon HMS-Beagle
U	1431302	1432818	0.29	+	.	ID=DGIL_AUG30_p1.U.g280.t1; prot=AAC28744/7213/env-like protein [Ceratitis capitata]
U	1436802	1437596	0.13	+	.	ID=DGIL_AUG30_p1.U.g282.t1; prot=ABD72266/7264/gag polyprotein [Drosophila buzzatii]
U	1437652	1440969	0.06	+	.	ID=DGIL_AUG30_p1.U.g283.t1; prot=ABD72267/7264/pol polyprotein [Drosophila buzzatii]
U	1441706	1460241	0.01	-	.	ID=DGIL_AUG30_p1.U.g284.t1; prot=Q8I7P9/7227/Retrovirus-related Pol polyprotein from transposon opus [Includes: Protease ;  Reverse transcriptase ;  Endonuclease]
U	1463642	1464146	0.1	+	.	ID=DGIL_AUG30_p1.U.g288.t1; prot=ZP_00374015/307502/hypothetical protein WwAna0364 [Wolbachia endosymbiont of Drosophila ananassae]
U	1464222	1467342	0.02	+	.	ID=DGIL_AUG30_p1.U.g289.t1; prot=ABD72267/7264/pol polyprotein [Drosophila buzzatii]
U	1468353	1469181	0.07	-	.	ID=DGIL_AUG30_p1.U.g292.t1; prot=ZP_00374049/307502/Zinc finger, C3HC4 type (RING finger) domain protein [Wolbachia endosymbiont of Drosophila ananassae]
U	1469852	1479722	0.02	+	.	ID=DGIL_AUG30_p1.U.g293.t1; prot=NP_001104110/7227/CG41012 CG41012-PA [Drosophila melanogaster]
U	1480366	1482171	0.02	-	.	ID=DGIL_AUG30_p1.U.g294.t1; prot=ZP_00374049/307502/Zinc finger, C3HC4 type (RING finger) domain protein [Wolbachia endosymbiont of Drosophila ananassae]
U	1482312	1488969	0.16	+	.	ID=DGIL_AUG30_p1.U.g295.t1; prot=BAF48319/2788/reverse transcriptase [Porphyra yezoensis]
U	1495762	1503623	0.07	+	.	ID=DGIL_AUG30_p1.U.g299.t1; prot=CAA81643/7227/blastopia polyprotein [Drosophila melanogaster]
U	1503649	1514571	0.01	-	.	ID=DGIL_AUG30_p1.U.g300.t1; prot=AAQ01583/7160/reverse transcriptase [Aedes albopictus]
U	1520662	1521466	0.2	+	.	ID=DGIL_AUG30_p1.U.g302.t1; prot=ZP_00373429/307502/Pol protein [Wolbachia endosymbiont of Drosophila ananassae]
U	1521532	1522570	0.06	+	.	ID=DGIL_AUG30_p1.U.g303.t1; prot=AAC24972/7245/reverse transcriptase [Drosophila yakuba]
U	1528955	1530157	0.02	-	.	ID=DGIL_AUG30_p1.U.g304.t1; prot=Q967S7/7227/Retrovirus-related Gag polyprotein from transposon HMS-Beagle
U	1531189	1533347	0.05	-	.	ID=DGIL_AUG30_p1.U.g305.t1; prot=ABI96219/7220/unknown [Drosophila erecta]
U	1536018	1537672	0.04	+	.	ID=DGIL_AUG30_p1.U.g308.t1; prot=CAD32253/7227/gag-pol polyprotein precursor;  hypothetical protein [Drosophila melanogaster]
U	1537728	1538750	0.27	+	.	ID=DGIL_AUG30_p1.U.g309.t1; prot=CAD32253/7227/gag-pol polyprotein precursor;  hypothetical protein [Drosophila melanogaster]
U	1592269	1593337	0.02	-	.	ID=DGIL_AUG30_p1.U.g314.t1; prot=AAA28508/7227/reverse transcriptase (put.);  putative
U	1601408	1616680	0.01	+	.	ID=DGIL_AUG30_p1.U.g315.t1; prot=AAK52055/7227/RNA-directed DNA polymerase [Drosophila melanogaster]
U	1640358	1640947	0.21	-	.	ID=DGIL_AUG30_p1.U.g322.t1; prot=P04146/7227/Copia protein (Gag-int-pol protein) [Contains: Copia VLP protein;  Copia protease ]
U	1640999	1641897	0.48	-	.	ID=DGIL_AUG30_p1.U.g323.t1; prot=CAA65152/7227/orf [Drosophila melanogaster]
U	1642070	1643457	0.03	-	.	ID=DGIL_AUG30_p1.U.g324.t1; prot=XP_001193133/7668/PREDICTED: similar to zinc finger protein, partial [Strongylocentrotus purpuratus]
U	1643733	1660437	0.01	-	.	ID=DGIL_AUG30_p1.U.g325.t1; prot=AAA28508/7227/reverse transcriptase (put.);  putative
U	1660732	1662847	0.02	-	.	ID=DGIL_AUG30_p1.U.g326.t1; prot=NP_001015297/7227/CG40124 CG40124-PA [Drosophila melanogaster]
U	1692200	1694126	0.07	-	.	ID=DGIL_AUG30_p1.U.g335.t1; prot=AAN87269/7227/ORF [Drosophila melanogaster]
U	1708887	1709428	0.26	+	.	ID=DGIL_AUG30_p1.U.g336.t1; prot=ZP_00373731/307502/gag protein [Wolbachia endosymbiont of Drosophila ananassae]
U	1740818	1741506	0.28	-	.	ID=DGIL_AUG30_p1.U.g348.t1; prot=AAM51136/7227/SD26211p [Drosophila melanogaster]
U	1744627	1745101	0.08	+	.	ID=DGIL_AUG30_p1.U.g351.t1; prot=CAA04050/7227/RNase H;  integrase;  protease;  reverse transcriptase [Drosophila melanogaster]
U	1745104	1745726	0.04	-	.	ID=DGIL_AUG30_p1.U.g352.t1; prot=NP_001104370/7227/CG41138 CG41138-PB, isoform B [Drosophila melanogaster]
U	1766667	1766970	0.1	+	.	ID=DGIL_AUG30_p1.U.g359.t1; prot=NP_001104445/7227/CG41286 CG41286-PA [Drosophila melanogaster]
U	1772033	1782206	0.07	-	.	ID=DGIL_AUG30_p1.U.g361.t1; prot=AAK52060/7227/gag protein [Drosophila melanogaster]
U	1786593	1787176	0.35	-	.	ID=DGIL_AUG30_p1.U.g362.t1; prot=NP_001104063/7227/CG40758 CG40758-PA [Drosophila melanogaster]
U	1787228	1789236	0.13	-	.	ID=DGIL_AUG30_p1.U.g363.t1; prot=ZP_00373907/307502/envelope protein [Wolbachia endosymbiont of Drosophila ananassae]
U	1796578	1810026	0.1	-	.	ID=DGIL_AUG30_p1.U.g365.t1; prot=AAK53386/7227/reverse transcriptase-like polymerase [Drosophila melanogaster]
U	1820397	1821025	0.15	+	.	ID=DGIL_AUG30_p1.U.g369.t1; prot=CAA04049/7227/Gag protein [Drosophila melanogaster]
U	1835909	1838336	0.06	-	.	ID=DGIL_AUG30_p1.U.g371.t1; prot=AAX33364/7227/RH66770p [Drosophila melanogaster]
U	1860859	1861607	0.03	-	.	ID=DGIL_AUG30_p1.U.g376.t1; prot=AAM29225/7227/AT08427p [Drosophila melanogaster]
U	1865858	1869552	0.03	+	.	ID=DGIL_AUG30_p1.U.g379.t1; prot=CAA32198/7227/polyprotein [Drosophila melanogaster]
U	1869599	1870467	0.24	-	.	ID=DGIL_AUG30_p1.U.g380.t1; est=AI517736,BE662213; prot=AAY84915/7227/IP10123p [Drosophila melanogaster]
U	1870524	1872577	0.04	-	.	ID=DGIL_AUG30_p1.U.g381.t1; prot=AAK84928/7227/SD01615p [Drosophila melanogaster]
U	1874129	1874777	0.1	-	.	ID=DGIL_AUG30_p1.U.g382.t1; prot=ABI48302/7227/gag protein [Drosophila melanogaster]
U	1885672	1893367	0.01	-	.	ID=DGIL_AUG30_p1.U.g384.t1; est=BP546681,BP542474; prot=AAN34650/7227/gag protein [Drosophila melanogaster]
U	1928938	1934832	0.05	+	.	ID=DGIL_AUG30_p1.U.g388.t1; est=BI627380,BI634965; prot=Q95SX7/7227/Probable RNA-directed DNA polymerase from transposon BS (Reverse transcriptase)
U	1950272	1951967	0.04	-	.	ID=DGIL_AUG30_p1.U.g392.t1; prot=NP_001104409/7227/CG42228 CG42228-PA [Drosophila melanogaster]
U	1953958	1954985	0.39	+	.	ID=DGIL_AUG30_p1.U.g393.t1; prot=ZP_00373907/307502/envelope protein [Wolbachia endosymbiont of Drosophila ananassae]
U	1979038	1980667	0.06	+	.	ID=DGIL_AUG30_p1.U.g399.t1; prot=AAO12862/7293/Camar1 transposase [Chymomyza amoena]
U	2050096	2059374	0.01	+	.	ID=DGIL_AUG30_p2.U.g10.t1; prot=AAL25501/7227/SD04061p [Drosophila melanogaster]
U	2068865	2070785	0.43	-	.	ID=DGIL_AUG30_p2.U.g12.t1; prot=NP_001104146/7227/CG40950 CG40950-PA [Drosophila melanogaster]
U	2074327	2080315	0.17	-	.	ID=DGIL_AUG30_p2.U.g16.t1; prot=AAB66824/7244/Tel1 [Drosophila virilis]
U	2084576	2085290	0.05	+	.	ID=DGIL_AUG30_p2.U.g17.t1; prot=AAC33317/7244/gag [Drosophila virilis]
U	2086187	2086965	0.04	-	.	ID=DGIL_AUG30_p2.U.g20.t1; prot=AAL90009/7227/AT07338p [Drosophila melanogaster]
U	2087847	2088725	0.16	-	.	ID=DGIL_AUG30_p2.U.g22.t1; prot=CAB99192/7227/endonuclease/reverse transcriptase [Drosophila melanogaster]
U	2103000	2103755	0.24	-	.	ID=DGIL_AUG30_p2.U.g25.t1; prot=AAC28744/7213/env-like protein [Ceratitis capitata]
U	2115214	2117505	0.01	-	.	ID=DGIL_AUG30_p2.U.g28.t1; est=BF487888,BF487888; prot=AAM50567/7227/AT22983p [Drosophila melanogaster]
U	2118997	2124275	0.01	-	.	ID=DGIL_AUG30_p2.U.g29.t1; prot=AAN34650/7227/gag protein [Drosophila melanogaster]
U	2132466	2136389	0.12	+	.	ID=DGIL_AUG30_p2.U.g31.t1; prot=CAA32198/7227/polyprotein [Drosophila melanogaster]
U	2165294	2169794	0.01	-	.	ID=DGIL_AUG30_p2.U.g34.t1; prot=AAS13459/7240/putative reverse transcriptase [Drosophila simulans]
U	2169955	2170564	0.1	-	.	ID=DGIL_AUG30_p2.U.g35.t1; prot=Q9NBX5/7227/Nucleic-acid-binding protein from transposon X-element
U	2236955	2241164	0.06	+	.	ID=DGIL_AUG30_p2.U.g43.t1; est=BG632137; prot=AAK52055/7227/RNA-directed DNA polymerase [Drosophila melanogaster]
U	2242375	2245229	0.18	+	.	ID=DGIL_AUG30_p2.U.g44.t1; prot=AAK52056/7227/envelope protein [Drosophila melanogaster]
U	2301486	2309974	0.02	-	.	ID=DGIL_AUG30_p2.U.g50.t1; prot=Q9NBX4/7227/Probable RNA-directed DNA polymerase from transposon X-element (Reverse transcriptase)
U	2323996	2324834	0.03	-	.	ID=DGIL_AUG30_p2.U.g53.t1; prot=AAX28843/7227/gag protein [Drosophila melanogaster]
U	2355869	2358012	0.03	+	.	ID=DGIL_AUG30_p2.U.g61.t1; prot=NP_001104035/7227/CG41246 CG41246-PA [Drosophila melanogaster]
U	2360949	2368458	0.24	+	.	ID=DGIL_AUG30_p2.U.g62.t1; prot=NP_001104035/7227/CG41246 CG41246-PA [Drosophila melanogaster]
U	2370880	2372098	0.07	-	.	ID=DGIL_AUG30_p2.U.g63.t1; prot=AAM11673/7227/gag protein [Drosophila melanogaster]
U	2372322	2384798	0.22	-	.	ID=DGIL_AUG30_p2.U.g64.t1; prot=CAA73721/7227/indora [Drosophila melanogaster]
U	2384898	2388458	0.12	-	.	ID=DGIL_AUG30_p2.U.g65.t1; prot=ABD72267/7264/pol polyprotein [Drosophila buzzatii]
U	2394589	2395974	0.29	+	.	ID=DGIL_AUG30_p2.U.g66.t1; prot=NP_001015277/7227/CG40138 CG40138-PA [Drosophila melanogaster]
U	2395996	2405658	0.08	-	.	ID=DGIL_AUG30_p2.U.g67.t1; prot=CAA08806/7227/Gag protein [Drosophila melanogaster]
U	2405710	2411498	0.03	-	.	ID=DGIL_AUG30_p2.U.g68.t1; prot=AAN34648/7227/truncated pol protein [Drosophila melanogaster]
U	2415739	2419353	0.01	+	.	ID=DGIL_AUG30_p2.U.g69.t1; prot=NP_001104085/7227/CG41558 CG41558-PA [Drosophila melanogaster]
U	2441220	2442408	0.11	-	.	ID=DGIL_AUG30_p2.U.g73.t1; prot=ABI48302/7227/gag protein [Drosophila melanogaster]
U	2462599	2465451	0.02	+	.	ID=DGIL_AUG30_p2.U.g77.t1; prot=CAB99191/7227/gag-like protein [Drosophila melanogaster]
U	2465460	2466738	0.05	-	.	ID=DGIL_AUG30_p2.U.g78.t1; prot=AAT47767/7227/RE14563p [Drosophila melanogaster]
U	2472649	2475285	0.01	+	.	ID=DGIL_AUG30_p2.U.g80.t1; est=BI635680,BI640125,BI640906; prot=CAB99191/7227/gag-like protein [Drosophila melanogaster]
U	2475615	2477438	0.07	-	.	ID=DGIL_AUG30_p2.U.g81.t1; est=CK136075; prot=NP_001104160/7227/CG40924 CG40924-PA [Drosophila melanogaster]
U	2488630	2488988	0.09	-	.	ID=DGIL_AUG30_p2.U.g83.t1; prot=P04146/7227/Copia protein (Gag-int-pol protein) [Contains: Copia VLP protein;  Copia protease ]
U	2498296	2499528	0.1	-	.	ID=DGIL_AUG30_p2.U.g88.t1; prot=AAT47767/7227/RE14563p [Drosophila melanogaster]
U	2560807	2561392	0.12	+	.	ID=DGIL_AUG30_p2.U.g90.t1; prot=AAN87269/7227/ORF [Drosophila melanogaster]
U	2563157	2563551	0.17	+	.	ID=DGIL_AUG30_p2.U.g93.t1; prot=AAN87269/7227/ORF [Drosophila melanogaster]
U	2567367	2571659	0.01	+	.	ID=DGIL_AUG30_p2.U.g95.t1; prot=ABI48303/7227/pol protein [Drosophila melanogaster]
U	2576717	2579480	0.1	+	.	ID=DGIL_AUG30_p2.U.g98.t1; prot=NP_001104163/7227/CG40856 CG40856-PA [Drosophila melanogaster]
U	2603618	2604026	0.3	-	.	ID=DGIL_AUG30_p2.U.g100.t1; prot=NP_001015149/7227/CG41059 CG41059-PA [Drosophila melanogaster]
U	2604841	2605736	0.08	-	.	ID=DGIL_AUG30_p2.U.g101.t1; prot=ZP_00373813/307502/reverse transcriptase polyprotein [Wolbachia endosymbiont of Drosophila ananassae]
U	2608968	2609976	0.05	-	.	ID=DGIL_AUG30_p2.U.g104.t1; prot=NP_001104160/7227/CG40924 CG40924-PA [Drosophila melanogaster]
U	2618487	2619670	0.05	+	.	ID=DGIL_AUG30_p2.U.g106.t1; prot=ZP_00373813/307502/reverse transcriptase polyprotein [Wolbachia endosymbiont of Drosophila ananassae]
U	2619757	2620972	0.11	+	.	ID=DGIL_AUG30_p2.U.g107.t1; prot=NP_001104113/7227/CG40505 CG40505-PA [Drosophila melanogaster]
U	2636117	2636721	0.05	+	.	ID=DGIL_AUG30_p2.U.g109.t1; prot=AAN87269/7227/ORF [Drosophila melanogaster]
U	2639957	2647711	0.03	+	.	ID=DGIL_AUG30_p2.U.g111.t1; est=BP542211; prot=CAD32253/7227/gag-pol polyprotein precursor;  hypothetical protein [Drosophila melanogaster]
U	2716568	2718694	0.02	+	.	ID=DGIL_AUG30_p2.U.g119.t1; prot=CAA32198/7227/polyprotein [Drosophila melanogaster]
U	2878068	2878982	0.21	+	.	ID=DGIL_AUG30_p2.U.g134.t1; prot=BAA57030/7240/unnamed protein product [Drosophila simulans]
U	2890310	2904657	0.01	-	.	ID=DGIL_AUG30_p2.U.g136.t1; est=EC214797; prot=CAD32253/7227/gag-pol polyprotein precursor;  hypothetical protein [Drosophila melanogaster]
U	2919748	2927647	0.2	-	.	ID=DGIL_AUG30_p2.U.g137.t1; prot=NP_001104176/7227/CG41015 CG41015-PA [Drosophila melanogaster]
U	2943778	2950473	0.02	+	.	ID=DGIL_AUG30_p2.U.g141.t1; prot=CAB99191/7227/gag-like protein [Drosophila melanogaster]
U	2953123	2955337	0.02	-	.	ID=DGIL_AUG30_p2.U.g143.t1; prot=Q9NBX4/7227/Probable RNA-directed DNA polymerase from transposon X-element (Reverse transcriptase)
U	2956797	2957997	0.08	-	.	ID=DGIL_AUG30_p2.U.g145.t1; est=AA140926; prot=AAK84933/7227/SD02026p [Drosophila melanogaster]
U	2976518	2988268	0.11	+	.	ID=DGIL_AUG30_p2.U.g146.t1; prot=AAK52055/7227/RNA-directed DNA polymerase [Drosophila melanogaster]
U	2988448	2994266	0.19	+	.	ID=DGIL_AUG30_p2.U.g147.t1; prot=P10403/7227/Retrovirus-related Env polyprotein from transposon gypsy
U	2994518	2995867	0.04	-	.	ID=DGIL_AUG30_p2.U.g148.t1; prot=AAA74495/7243/unknown protein
U	3003159	3005937	0.04	-	.	ID=DGIL_AUG30_p2.U.g149.t1; est=AI387169; prot=P16424/7227/Uncharacterized 50 kDa protein in type I retrotransposable element R1DM (ORF 1)
U	3006108	3007289	0.08	+	.	ID=DGIL_AUG30_p2.U.g150.t1; prot=NP_001015124/7227/CG40244 CG40244-PA [Drosophila melanogaster]
U	3007599	3008727	0.27	-	.	ID=DGIL_AUG30_p2.U.g151.t1; prot=NP_001015091/7227/CG40269 CG40269-PA [Drosophila melanogaster]
U	3014530	3020177	0.09	-	.	ID=DGIL_AUG30_p2.U.g156.t1; prot=NP_001104163/7227/CG40856 CG40856-PA [Drosophila melanogaster]
U	3030748	3036382	0.05	+	.	ID=DGIL_AUG30_p2.U.g159.t1; prot=BAA57030/7240/unnamed protein product [Drosophila simulans]
U	3067158	3068583	0.09	+	.	ID=DGIL_AUG30_p2.U.g161.t1; prot=AAC17188/7227/probable gag protein [Drosophila melanogaster]
U	3069518	3070672	0.15	+	.	ID=DGIL_AUG30_p2.U.g163.t1; prot=CAJ13354/7240/pol protein [Drosophila simulans]
U	3076191	3090437	0.01	-	.	ID=DGIL_AUG30_p2.U.g166.t1; est=AA141913; prot=P16424/7227/Uncharacterized 50 kDa protein in type I retrotransposable element R1DM (ORF 1)
U	3113484	3119427	0.09	-	.	ID=DGIL_AUG30_p2.U.g167.t1; prot=AAK52055/7227/RNA-directed DNA polymerase [Drosophila melanogaster]
U	3119578	3128573	0.02	+	.	ID=DGIL_AUG30_p2.U.g168.t1; est=BI568707,BI612313; prot=AAL25501/7227/SD04061p [Drosophila melanogaster]
U	3133637	3135117	0.1	-	.	ID=DGIL_AUG30_p2.U.g170.t1; prot=P21329/7221/RNA-directed DNA polymerase from mobile element jockey (Reverse transcriptase)
U	3232842	3234234	0.08	+	.	ID=DGIL_AUG30_p2.U.g175.t1; prot=AAA28508/7227/reverse transcriptase (put.);  putative
U	3261792	3282652	0.01	+	.	ID=DGIL_AUG30_p2.U.g176.t1; est=AA141381; prot=CAB99192/7227/endonuclease/reverse transcriptase [Drosophila melanogaster]
U	3282702	3290590	0.04	+	.	ID=DGIL_AUG30_p2.U.g177.t1; prot=NP_001104130/7227/CG41587 CG41587-PA [Drosophila melanogaster]
U	3302462	3304219	0.12	+	.	ID=DGIL_AUG30_p2.U.g179.t1; prot=AAC28744/7213/env-like protein [Ceratitis capitata]
U	3394538	3395725	0.05	-	.	ID=DGIL_AUG30_p2.U.g185.t1; prot=CAA32198/7227/polyprotein [Drosophila melanogaster]
U	3403440	3405225	0.05	-	.	ID=DGIL_AUG30_p2.U.g188.t1; prot=AAK84933/7227/SD02026p [Drosophila melanogaster]
U	3451566	3453860	0.08	+	.	ID=DGIL_AUG30_p2.U.g192.t1; prot=AAK53386/7227/reverse transcriptase-like polymerase [Drosophila melanogaster]
U	3463777	3467925	0.01	-	.	ID=DGIL_AUG30_p2.U.g193.t1; prot=NP_001104102/7227/CG40600 CG40600-PA, isoform A [Drosophila melanogaster]
U	3501826	3506034	0.01	+	.	ID=DGIL_AUG30_p2.U.g195.t1; est=AI403841,AI134735; prot=XP_001056169/10116/PREDICTED: similar to CG40323-PB.3 [Rattus norvegicus]
U	3506047	3506925	0.04	-	.	ID=DGIL_AUG30_p2.U.g196.t1; prot=AAY54894/7227/IP06032p [Drosophila melanogaster]
U	3510816	3514262	0.04	+	.	ID=DGIL_AUG30_p2.U.g197.t1; prot=ABI48303/7227/pol protein [Drosophila melanogaster]
U	3524637	3532905	0.04	-	.	ID=DGIL_AUG30_p2.U.g199.t1; prot=CAB99192/7227/endonuclease/reverse transcriptase [Drosophila melanogaster]
U	3534926	3535778	0.21	+	.	ID=DGIL_AUG30_p2.U.g201.t1; prot=Q8I7Q0/7227/Retrovirus-related Gag polyprotein from transposon opus
U	3535846	3540698	0.01	+	.	ID=DGIL_AUG30_p2.U.g202.t1; prot=CAA32198/7227/polyprotein [Drosophila melanogaster]
U	3542836	3545380	0.2	+	.	ID=DGIL_AUG30_p2.U.g203.t1; prot=AAA28508/7227/reverse transcriptase (put.);  putative
U	3546156	3549747	0.03	+	.	ID=DGIL_AUG30_p2.U.g204.t1; prot=AAS13459/7240/putative reverse transcriptase [Drosophila simulans]
U	3564910	3566654	0.08	-	.	ID=DGIL_AUG30_p2.U.g206.t1; prot=S00954/7227/pol polyprotein - fruit fly (Drosophila melanogaster) transposon 1731
U	3574605	3577234	0.01	-	.	ID=DGIL_AUG30_p2.U.g210.t1; prot=NP_001104441/7227/CG41392 CG41392-PA [Drosophila melanogaster]
U	3630405	3640437	0.06	+	.	ID=DGIL_AUG30_p2.U.g212.t1; prot=CAA65152/7227/orf [Drosophila melanogaster]
U	3644040	3651804	0.03	-	.	ID=DGIL_AUG30_p2.U.g213.t1; prot=P16424/7227/Uncharacterized 50 kDa protein in type I retrotransposable element R1DM (ORF 1)
U	3662515	3664637	0.03	+	.	ID=DGIL_AUG30_p2.U.g216.t1; prot=CAB99192/7227/endonuclease/reverse transcriptase [Drosophila melanogaster]
U	3664646	3677724	0.04	-	.	ID=DGIL_AUG30_p2.U.g217.t1; prot=AAK52055/7227/RNA-directed DNA polymerase [Drosophila melanogaster]
U	3681591	3682184	0.4	-	.	ID=DGIL_AUG30_p2.U.g218.t1; prot=NP_001015297/7227/CG40124 CG40124-PA [Drosophila melanogaster]
U	3694935	3695739	0.08	+	.	ID=DGIL_AUG30_p2.U.g219.t1; prot=ZP_00373731/307502/gag protein [Wolbachia endosymbiont of Drosophila ananassae]
U	3698195	3700779	0.32	+	.	ID=DGIL_AUG30_p2.U.g220.t1; prot=AAA28508/7227/reverse transcriptase (put.);  putative
U	3708242	3710544	0.02	-	.	ID=DGIL_AUG30_p2.U.g221.t1; prot=NP_001104032/7227/CG41251 CG41251-PA [Drosophila melanogaster]
U	3711881	3713484	0.08	-	.	ID=DGIL_AUG30_p2.U.g222.t1; prot=NP_001104163/7227/CG40856 CG40856-PA [Drosophila melanogaster]
U	3713618	3722464	0.09	-	.	ID=DGIL_AUG30_p2.U.g223.t1; prot=NP_001104089/7227/CG41573 CG41573-PA [Drosophila melanogaster]
U	3724926	3725434	0.36	-	.	ID=DGIL_AUG30_p2.U.g225.t1; prot=NP_001104013/7227/CG40339 CG40339-PB, isoform B [Drosophila melanogaster]
U	3725741	3743474	0.01	-	.	ID=DGIL_AUG30_p2.U.g226.t1; prot=XP_308478/180454/AGAP007349-PA [Anopheles gambiae str. PEST]
U	3744456	3745734	0.06	-	.	ID=DGIL_AUG30_p2.U.g227.t1; prot=NP_001104160/7227/CG40924 CG40924-PA [Drosophila melanogaster]
U	3763304	3771178	0.05	+	.	ID=DGIL_AUG30_p2.U.g231.t1; prot=CAB99191/7227/gag-like protein [Drosophila melanogaster]
U	3851024	3870558	0.01	+	.	ID=DGIL_AUG30_p2.U.g233.t1; prot=XP_001056169/10116/PREDICTED: similar to CG40323-PB.3 [Rattus norvegicus]
U	3870614	3885478	0.46	+	.	ID=DGIL_AUG30_p2.U.g234.t1; prot=CAA09069/7227/polyprotein [Drosophila melanogaster]
U	3890154	3896118	0.01	+	.	ID=DGIL_AUG30_p2.U.g235.t1; prot=CAB99192/7227/endonuclease/reverse transcriptase [Drosophila melanogaster]
U	3896843	3899483	0.03	-	.	ID=DGIL_AUG30_p2.U.g236.t1; prot=P04282/7227/Retrovirus-related Gag polyprotein from copia-like transposable element 17.6
U	3927244	3933373	0.16	+	.	ID=DGIL_AUG30_p2.U.g242.t1; prot=P21329/7221/RNA-directed DNA polymerase from mobile element jockey (Reverse transcriptase)
U	3937699	3939723	0.1	-	.	ID=DGIL_AUG30_p2.U.g243.t1; prot=AAX28844/7227/reverse transcriptase [Drosophila melanogaster]
U	3954556	3955099	0.13	+	.	ID=DGIL_AUG30_p3.U.g10.t1; evd_pTF=; prot=CAA08806/7227/Gag protein [Drosophila melanogaster]
U	3969926	3970490	0.11	+	.	ID=DGIL_AUG30_p3.U.g13.t1; prot=NP_001104097/7227/CG40609 CG40609-PA, isoform A [Drosophila melanogaster]
U	3970497	3970935	0.19	-	.	ID=DGIL_AUG30_p3.U.g14.t1; prot=NP_001104145/7227/CG40748 CG40748-PA [Drosophila melanogaster]
U	3971756	3991050	0.01	+	.	ID=DGIL_AUG30_p3.U.g15.t1; prot=XP_001630582/45351/predicted protein [Nematostella vectensis]
U	4013596	4017180	0.02	+	.	ID=DGIL_AUG30_p3.U.g18.t1; est=BG639637; prot=XP_001601413/7425/PREDICTED: similar to pol polyprotein [Nasonia vitripennis]
U	4032046	4044490	0.02	+	.	ID=DGIL_AUG30_p3.U.g20.t1; prot=NP_727928/7227/CG32580 CG32580-PA [Drosophila melanogaster]
U	4055246	4059092	0.07	-	.	ID=DGIL_AUG30_p3.U.g22.t1; est=BI574943; prot=Q9NBX4/7227/Probable RNA-directed DNA polymerase from transposon X-element (Reverse transcriptase)
U	4071323	4085940	0.04	+	.	ID=DGIL_AUG30_p3.U.g24.t1; prot=AAS13459/7240/putative reverse transcriptase [Drosophila simulans]
U	4115634	4116042	0.06	-	.	ID=DGIL_AUG30_p3.U.g28.t1; prot=AAM11673/7227/gag protein [Drosophila melanogaster]
U	4128182	4131502	0.06	-	.	ID=DGIL_AUG30_p3.U.g29.t1; est=BF504220; prot=AAM51136/7227/SD26211p [Drosophila melanogaster]
U	4182663	4185097	0.02	+	.	ID=DGIL_AUG30_p3.U.g30.t1; prot=AAM49782/7244/DEAD-box RNA helicase [Drosophila virilis]
U	4194153	4221126	0.01	+	.	ID=DGIL_AUG30_p3.U.g33.t1; prot=P16425/7227/Putative 115 kDa protein in type-1 retrotransposable element R1DM (Putative 115 kDa protein in type I retrotransposable element R1DM) (ORF 2)
U	4265079	4276393	0.05	+	.	ID=DGIL_AUG30_p3.U.g35.t1; prot=CAB99191/7227/gag-like protein [Drosophila melanogaster]
U	4278029	4288663	0.14	+	.	ID=DGIL_AUG30_p3.U.g36.t1; prot=CAD32253/7227/gag-pol polyprotein precursor;  hypothetical protein [Drosophila melanogaster]
U	4289859	4291864	0.15	+	.	ID=DGIL_AUG30_p3.U.g37.t1; prot=XP_001601685/7425/PREDICTED: similar to gag-pol polyprotein [Nasonia vitripennis]
U	4291924	4292578	0.2	-	.	ID=DGIL_AUG30_p3.U.g38.t1; prot=NP_001104144/7227/CG40947 CG40947-PA [Drosophila melanogaster]
U	4294085	4294868	0.05	-	.	ID=DGIL_AUG30_p3.U.g39.t1; prot=NP_001104179/7227/CG40719 CG40719-PA [Drosophila melanogaster]
U	4296075	4304858	0.02	-	.	ID=DGIL_AUG30_p3.U.g40.t1; prot=AAM50737/7227/GM31840p [Drosophila melanogaster]
U	4306841	4323008	0.01	-	.	ID=DGIL_AUG30_p3.U.g42.t1; prot=P16425/7227/Putative 115 kDa protein in type-1 retrotransposable element R1DM (Putative 115 kDa protein in type I retrotransposable element R1DM) (ORF 2)
U	4354603	4382108	0.04	-	.	ID=DGIL_AUG30_p3.U.g45.t1; prot=CAD32253/7227/gag-pol polyprotein precursor;  hypothetical protein [Drosophila melanogaster]
U	4386069	4386999	0.14	+	.	ID=DGIL_AUG30_p3.U.g48.t1; prot=BAB09923/3702/copia-like retrotransposable element [Arabidopsis thaliana]
U	4387059	4395393	0.31	+	.	ID=DGIL_AUG30_p3.U.g49.t1; prot=AAM51136/7227/SD26211p [Drosophila melanogaster]
U	4406789	4407873	0.02	+	.	ID=DGIL_AUG30_p3.U.g51.t1; prot=AAM51136/7227/SD26211p [Drosophila melanogaster]
U	4420093	4433957	0.04	+	.	ID=DGIL_AUG30_p3.U.g53.t1; prot=CAD32253/7227/gag-pol polyprotein precursor;  hypothetical protein [Drosophila melanogaster]
U	4434014	4444142	0.01	-	.	ID=DGIL_AUG30_p3.U.g54.t1; prot=P16425/7227/Putative 115 kDa protein in type-1 retrotransposable element R1DM (Putative 115 kDa protein in type I retrotransposable element R1DM) (ORF 2)
U	4485727	4497382	0.05	-	.	ID=DGIL_AUG30_p3.U.g58.t1; prot=AAK77263/7227/GH03753p [Drosophila melanogaster]
U	4507753	4508739	0.02	+	.	ID=DGIL_AUG30_p3.U.g59.t1; prot=XP_001357101/7237/GA16356-PA [Drosophila pseudoobscura]
U	4508793	4512187	0.03	+	.	ID=DGIL_AUG30_p3.U.g60.t1; prot=AAN34650/7227/gag protein [Drosophila melanogaster]
U	4582877	4586138	0.01	+	.	ID=DGIL_AUG30_p3.U.g63.t1; prot=AAM51136/7227/SD26211p [Drosophila melanogaster]
U	4594688	4608536	0.01	-	.	ID=DGIL_AUG30_p3.U.g64.t1; prot=AAB66824/7244/Tel1 [Drosophila virilis]
U	4621034	4632046	0.01	-	.	ID=DGIL_AUG30_p3.U.g65.t1; prot=CAB99192/7227/endonuclease/reverse transcriptase [Drosophila melanogaster]
U	4680713	4683736	0.04	-	.	ID=DGIL_AUG30_p3.U.g73.t1; prot=CAB99192/7227/endonuclease/reverse transcriptase [Drosophila melanogaster]
U	4702937	4705783	0.02	+	.	ID=DGIL_AUG30_p3.U.g75.t1; prot=CAC79667/7227/gag protein [Drosophila melanogaster]
U	4761877	4773071	0.01	+	.	ID=DGIL_AUG30_p3.U.g76.t1; prot=AAM51136/7227/SD26211p [Drosophila melanogaster]
U	4829898	4830526	0.09	-	.	ID=DGIL_AUG30_p3.U.g78.t1; prot=BAA57030/7240/unnamed protein product [Drosophila simulans]
U	4830882	4837406	0.45	-	.	ID=DGIL_AUG30_p3.U.g79.t1; prot=ZP_00373813/307502/reverse transcriptase polyprotein [Wolbachia endosymbiont of Drosophila ananassae]
U	4839345	4849286	0.11	-	.	ID=DGIL_AUG30_p3.U.g80.t1; prot=CAD32253/7227/gag-pol polyprotein precursor;  hypothetical protein [Drosophila melanogaster]
U	4850230	4851736	0.06	-	.	ID=DGIL_AUG30_p3.U.g82.t1; prot=ZP_00373812/307502/putative retrovirus-like env glycoprotein [Wolbachia endosymbiont of Drosophila ananassae]
U	4851945	4852996	0.45	-	.	ID=DGIL_AUG30_p3.U.g83.t1; prot=ZP_00373813/307502/reverse transcriptase polyprotein [Wolbachia endosymbiont of Drosophila ananassae]
U	4884058	4895386	0.04	-	.	ID=DGIL_AUG30_p3.U.g87.t1; prot=ABI96220/7220/unknown [Drosophila erecta]
U	4898907	4900073	0.38	+	.	ID=DGIL_AUG30_p3.U.g89.t1; prot=ABD72267/7264/pol polyprotein [Drosophila buzzatii]
U	4904127	4905000	0.21	+	.	ID=DGIL_AUG30_p3.U.g92.t1; prot=AAN34649/7227/gag protein [Drosophila melanogaster]
U	4910316	4911054	0.11	+	.	ID=DGIL_AUG30_p3.U.g93.t1; prot=NP_001104170/7227/CG40506 CG40506-PA [Drosophila melanogaster]
U	4912397	4914285	0.02	-	.	ID=DGIL_AUG30_p3.U.g95.t1; est=BI566787,BI581875,BI582425,BI587224,CK135269; prot=ABD72267/7264/pol polyprotein [Drosophila buzzatii]
U	4915066	4920860	0.01	+	.	ID=DGIL_AUG30_p3.U.g96.t1; prot=NP_001097919/7227/CHKov1 CG10618-PF, isoform F [Drosophila melanogaster]
U	4922158	4924785	0.01	-	.	ID=DGIL_AUG30_p3.U.g97.t1; prot=CAA32198/7227/polyprotein [Drosophila melanogaster]
U	4927032	4928365	0.04	-	.	ID=DGIL_AUG30_p3.U.g99.t1; prot=ZP_00373653/307502/indora [Wolbachia endosymbiont of Drosophila ananassae]
U	4947196	4947905	0.37	+	.	ID=DGIL_AUG30_p3.U.g101.t1; prot=NP_001104034/7227/CG41245 CG41245-PA [Drosophila melanogaster]
U	4948726	4949280	0.18	+	.	ID=DGIL_AUG30_p3.U.g102.t1; prot=AAM29225/7227/AT08427p [Drosophila melanogaster]
U	4977036	4978355	0.17	-	.	ID=DGIL_AUG30_p3.U.g106.t1; prot=AAK84933/7227/SD02026p [Drosophila melanogaster]
U	4980347	4981275	0.11	-	.	ID=DGIL_AUG30_p3.U.g108.t1; prot=CAA04050/7227/RNase H;  integrase;  protease;  reverse transcriptase [Drosophila melanogaster]
U	4997845	4999815	0.01	-	.	ID=DGIL_AUG30_p3.U.g110.t1; prot=ABD72267/7264/pol polyprotein [Drosophila buzzatii]
U	5016096	5016555	0.11	+	.	ID=DGIL_AUG30_p3.U.g114.t1; prot=ZP_00373813/307502/reverse transcriptase polyprotein [Wolbachia endosymbiont of Drosophila ananassae]
U	5016626	5017272	0.31	+	.	ID=DGIL_AUG30_p3.U.g115.t1; prot=ZP_00373813/307502/reverse transcriptase polyprotein [Wolbachia endosymbiont of Drosophila ananassae]
U	5017326	5020274	0.21	+	.	ID=DGIL_AUG30_p3.U.g116.t1; prot=ZP_00373812/307502/putative retrovirus-like env glycoprotein [Wolbachia endosymbiont of Drosophila ananassae]
U	5033676	5037760	0.04	+	.	ID=DGIL_AUG30_p3.U.g117.t1; prot=XP_001599568/7425/PREDICTED: similar to ENSANGP00000012343 [Nasonia vitripennis]
U	5046704	5047435	0.07	-	.	ID=DGIL_AUG30_p3.U.g118.t1; prot=AAN34649/7227/gag protein [Drosophila melanogaster]
U	5083956	5087680	0.01	+	.	ID=DGIL_AUG30_p3.U.g121.t1; prot=ZP_00373429/307502/Pol protein [Wolbachia endosymbiont of Drosophila ananassae]
U	5094799	5095774	0.02	-	.	ID=DGIL_AUG30_p3.U.g122.t1; prot=NP_001104163/7227/CG40856 CG40856-PA [Drosophila melanogaster]
U	5106435	5108430	0.44	+	.	ID=DGIL_AUG30_p3.U.g126.t1; prot=CAA04050/7227/RNase H;  integrase;  protease;  reverse transcriptase [Drosophila melanogaster]
U	5109305	5109854	0.05	-	.	ID=DGIL_AUG30_p3.U.g128.t1; prot=XP_001345994/7955/PREDICTED: similar to transposase [Danio rerio]
U	5121446	5122154	0.12	-	.	ID=DGIL_AUG30_p3.U.g129.t1; prot=ZP_00373731/307502/gag protein [Wolbachia endosymbiont of Drosophila ananassae]
U	5157318	5158304	0.14	-	.	ID=DGIL_AUG30_p3.U.g131.t1; prot=AAN87269/7227/ORF [Drosophila melanogaster]
U	5163275	5185704	0.33	+	.	ID=DGIL_AUG30_p3.U.g135.t1; prot=XP_001870858/7176/predicted protein [Culex pipiens quinquefasciatus]
U	5189418	5202344	0.01	-	.	ID=DGIL_AUG30_p3.U.g137.t1; prot=CAD32253/7227/gag-pol polyprotein precursor;  hypothetical protein [Drosophila melanogaster]
U	5214706	5237544	0.01	-	.	ID=DGIL_AUG30_p3.U.g138.t1; prot=XP_001056169/10116/PREDICTED: similar to CG40323-PB.3 [Rattus norvegicus]
U	5262756	5266514	0.03	-	.	ID=DGIL_AUG30_p3.U.g141.t1; prot=AAX33364/7227/RH66770p [Drosophila melanogaster]
U	5285605	5286279	0.13	+	.	ID=DGIL_AUG30_p3.U.g144.t1; prot=AAN34648/7227/truncated pol protein [Drosophila melanogaster]
U	5287445	5287965	0.07	+	.	ID=DGIL_AUG30_p3.U.g146.t1; prot=NP_001104051/7227/CG41279 CG41279-PA [Drosophila melanogaster]
U	5293745	5294846	0.1	+	.	ID=DGIL_AUG30_p3.U.g148.t1; est=BI623651,EV595204,EV595591,EV591206,EV592281,EV597373,EV598698,EV584787,EV579582,EV599306,EV595036,EV575072,EV599512,EV596493,EV600040,more; prot=ACA62444/47315/NADH dehydrogenase subunit 3 [Drosophila auraria]
U	5297345	5299048	0.13	+	.	ID=DGIL_AUG30_p3.U.g149.t1; est=EC056679,EC056820,EC056912,EC056956,EC056957,EC057014,EC057040,EC057246,EC057872,EC057923,EC058341,EC058510,EC058621,EC058622,EC058698,more; prot=NP_008287/7227/NADH dehydrogenase subunit 6 [Drosophila melanogaster]
U	5300856	5301344	0.26	-	.	ID=DGIL_AUG30_p3.U.g150.t1; est=EC058986,EC059847,EC069570,EC080976,EC081416,EC081846,EC081963,EC194941,EC195137,EC195378,EC196909,EC197429,EC206210,EC207266,EC207787,more; prot=P51937/7241/NADH-ubiquinone oxidoreductase chain 1 (NADH dehydrogenase subunit 1)
U	5304035	5317724	0.01	-	.	ID=DGIL_AUG30_p3.U.g151.t1; est=EV599598,CO185341,CO272727,CO275038,CO275074,CO282663,CO312735,CO343761; prot=AAA28508/7227/reverse transcriptase (put.);  putative
U	5321315	5322576	0.23	+	.	ID=DGIL_AUG30_p3.U.g152.t1; prot=CAA32198/7227/polyprotein [Drosophila melanogaster]
U	5335625	5336342	0.04	+	.	ID=DGIL_AUG30_p3.U.g154.t1; prot=CAA26447/7227/unnamed protein product [Drosophila melanogaster]
U	5349135	5351688	0.02	+	.	ID=DGIL_AUG30_p3.U.g155.t1; prot=NP_001104065/7227/CG41524 CG41524-PA [Drosophila melanogaster]
U	5362726	5378364	0.03	-	.	ID=DGIL_AUG30_p3.U.g157.t1; prot=NP_001104351/7227/CG41253 CG41253-PA [Drosophila melanogaster]
U	5400205	5400958	0.04	+	.	ID=DGIL_AUG30_p3.U.g159.t1; prot=AAK84933/7227/SD02026p [Drosophila melanogaster]
U	5402964	5404324	0.11	-	.	ID=DGIL_AUG30_p3.U.g160.t1; prot=XP_001865366/7176/zinc knuckle domain protein [Culex pipiens quinquefasciatus]
U	5480587	5482433	0.05	-	.	ID=DGIL_AUG30_p3.U.g168.t1; prot=AAK77263/7227/GH03753p [Drosophila melanogaster]
U	5483414	5491763	0.01	+	.	ID=DGIL_AUG30_p3.U.g169.t1; prot=XP_001621485/45351/hypothetical protein NEMVEDRAFT_v1g144708 [Nematostella vectensis]
U	5498546	5507483	0.01	-	.	ID=DGIL_AUG30_p3.U.g172.t1; prot=NP_001104110/7227/CG41012 CG41012-PA [Drosophila melanogaster]
U	5513153	5514143	0.01	-	.	ID=DGIL_AUG30_p3.U.g174.t1; prot=NP_524616/7227/plexin B CG17245-PA [Drosophila melanogaster]
U	5514554	5520122	0.02	+	.	ID=DGIL_AUG30_p3.U.g175.t1; prot=P16425/7227/Putative 115 kDa protein in type-1 retrotransposable element R1DM (Putative 115 kDa protein in type I retrotransposable element R1DM) (ORF 2)
U	5520174	5523638	0.01	+	.	ID=DGIL_AUG30_p3.U.g176.t1; prot=P16424/7227/Uncharacterized 50 kDa protein in type I retrotransposable element R1DM (ORF 1)
U	5542014	5542308	0.21	+	.	ID=DGIL_AUG30_p3.U.g182.t1; prot=NP_733083/7227/CG11844 CG11844-PB, isoform B [Drosophila melanogaster]
U	5546714	5549949	0.05	+	.	ID=DGIL_AUG30_p3.U.g185.t1; prot=NP_001104157/7227/CG40894 CG40894-PA [Drosophila melanogaster]
U	5549977	5550643	0.85	-	.	ID=DGIL_AUG30_p3.U.g186.t1; prot=ABI48303/7227/pol protein [Drosophila melanogaster]
U	5555824	5557388	0.21	+	.	ID=DGIL_AUG30_p3.U.g188.t1; prot=CAA65152/7227/orf [Drosophila melanogaster]
U	5557444	5558325	0.21	+	.	ID=DGIL_AUG30_p3.U.g189.t1; prot=NP_001015306/7227/CG40116 CG40116-PA [Drosophila melanogaster]
U	5558335	5559203	0.06	-	.	ID=DGIL_AUG30_p3.U.g190.t1; prot=NP_001104102/7227/CG40600 CG40600-PA, isoform A [Drosophila melanogaster]
U	5562194	5563738	0.22	+	.	ID=DGIL_AUG30_p3.U.g192.t1; prot=AAK52055/7227/RNA-directed DNA polymerase [Drosophila melanogaster]
U	5563784	5564453	0.09	-	.	ID=DGIL_AUG30_p3.U.g193.t1; prot=ZP_00373731/307502/gag protein [Wolbachia endosymbiont of Drosophila ananassae]
U	5566496	5569033	0.14	-	.	ID=DGIL_AUG30_p3.U.g194.t1; prot=ZP_00373812/307502/putative retrovirus-like env glycoprotein [Wolbachia endosymbiont of Drosophila ananassae]
U	5569093	5569693	0.04	-	.	ID=DGIL_AUG30_p3.U.g195.t1; prot=ZP_00373813/307502/reverse transcriptase polyprotein [Wolbachia endosymbiont of Drosophila ananassae]
U	5570914	5574613	0.02	+	.	ID=DGIL_AUG30_p3.U.g196.t1; prot=P16425/7227/Putative 115 kDa protein in type-1 retrotransposable element R1DM (Putative 115 kDa protein in type I retrotransposable element R1DM) (ORF 2)
U	5574995	5575963	0.2	-	.	ID=DGIL_AUG30_p3.U.g197.t1; prot=NP_001096859/7227/frizzled 3 CG16785-PB, isoform B [Drosophila melanogaster]
U	5579894	5580658	0.39	+	.	ID=DGIL_AUG30_p3.U.g198.t1; prot=Q9NBX4/7227/Probable RNA-directed DNA polymerase from transposon X-element (Reverse transcriptase)
U	5580884	5581437	0.15	+	.	ID=DGIL_AUG30_p3.U.g199.t1; prot=B56679/7175/probable reverse transcriptase - house mosquito
U	5593214	5593918	0.08	+	.	ID=DGIL_AUG30_p3.U.g201.t1; prot=AAM51136/7227/SD26211p [Drosophila melanogaster]
U	5601413	5602483	0.07	-	.	ID=DGIL_AUG30_p3.U.g203.t1; est=EL873028,EL873115,EL873202,EL873294; prot=NP_001104021/7227/CG41328 CG41328-PA [Drosophila melanogaster]
U	5617189	5619883	0.09	-	.	ID=DGIL_AUG30_p3.U.g206.t1; prot=CAB99192/7227/endonuclease/reverse transcriptase [Drosophila melanogaster]
U	5630564	5646108	0.04	+	.	ID=DGIL_AUG30_p3.U.g208.t1; prot=CAD65871/7227/pol protein [Drosophila melanogaster]
U	5654205	5655393	0.1	-	.	ID=DGIL_AUG30_p3.U.g209.t1; prot=P04146/7227/Copia protein (Gag-int-pol protein) [Contains: Copia VLP protein;  Copia protease ]
U	5662539	5663023	0.15	-	.	ID=DGIL_AUG30_p3.U.g210.t1; prot=NP_001015295/7227/CG40122 CG40122-PA [Drosophila melanogaster]
U	5663644	5664636	0.23	+	.	ID=DGIL_AUG30_p3.U.g211.t1; prot=NP_001104435/7227/CG40368 CG40368-PC [Drosophila melanogaster]
U	5665014	5666501	0.03	+	.	ID=DGIL_AUG30_p3.U.g212.t1; prot=Q8I7Q0/7227/Retrovirus-related Gag polyprotein from transposon opus
U	5674004	5675953	0.01	-	.	ID=DGIL_AUG30_p3.U.g213.t1; prot=AAM11672/7227/polyprotein [Drosophila melanogaster]
U	5682645	5688473	0.02	-	.	ID=DGIL_AUG30_p3.U.g217.t1; prot=AAC82604/7227/Prgag-pol [Drosophila melanogaster]
U	5694234	5698767	0.09	+	.	ID=DGIL_AUG30_p3.U.g218.t1; prot=NP_523848/7227/Suppressor of Stellate-like CG13591-PA, isoform A [Drosophila melanogaster]
U	5715034	5722675	0.01	+	.	ID=DGIL_AUG30_p3.U.g220.t1; est=BI361406,BI574610; prot=P16425/7227/Putative 115 kDa protein in type-1 retrotransposable element R1DM (Putative 115 kDa protein in type I retrotransposable element R1DM) (ORF 2)
U	5747496	5749673	0.05	-	.	ID=DGIL_AUG30_p3.U.g226.t1; est=BI583596,BI584823; prot=P16425/7227/Putative 115 kDa protein in type-1 retrotransposable element R1DM (Putative 115 kDa protein in type I retrotransposable element R1DM) (ORF 2)
U	5765645	5766453	0.07	-	.	ID=DGIL_AUG30_p3.U.g229.t1; prot=CAA32198/7227/polyprotein [Drosophila melanogaster]
U	5766774	5771158	0.04	+	.	ID=DGIL_AUG30_p3.U.g230.t1; est=EC256725,CO335678,CO339374; prot=T13173/7227/RNA-directed DNA polymerase (EC 2.7.7.49) - fruit fly  (Drosophila melanogaster) transposon TART-B1
U	5776435	5776953	0.26	-	.	ID=DGIL_AUG30_p3.U.g234.t1; prot=NP_001104338/7227/CG41232 CG41232-PA [Drosophila melanogaster]
U	5791045	5793753	0.06	-	.	ID=DGIL_AUG30_p3.U.g236.t1; est=BI641385; prot=CAD32253/7227/gag-pol polyprotein precursor;  hypothetical protein [Drosophila melanogaster]
U	5794670	5797983	0.1	-	.	ID=DGIL_AUG30_p3.U.g237.t1; prot=NP_001104443/7227/CG41280 CG41280-PA [Drosophila melanogaster]
U	5811344	5812956	0.12	+	.	ID=DGIL_AUG30_p3.U.g242.t1; prot=XP_001337245/7955/PREDICTED: hypothetical protein [Danio rerio]
U	5813454	5814118	0.04	+	.	ID=DGIL_AUG30_p3.U.g243.t1; prot=XP_001201290/7668/PREDICTED: similar to retrotransposon protein, putative, Ty3-gypsy subclass [Strongylocentrotus purpuratus]
U	5814135	5817453	0.09	-	.	ID=DGIL_AUG30_p3.U.g244.t1; prot=CAA08806/7227/Gag protein [Drosophila melanogaster]
U	5820194	5820688	0.05	+	.	ID=DGIL_AUG30_p3.U.g246.t1; prot=XP_001336536/7955/PREDICTED: similar to Gypsy Danio rerio 1 polyprotein
U	5834714	5835367	0.2	-	.	ID=DGIL_AUG30_p3.U.g248.t1; prot=CAA32198/7227/polyprotein [Drosophila melanogaster]
U	5846669	5853927	0.01	-	.	ID=DGIL_AUG30_p3.U.g251.t1; est=BI614006; prot=NP_001104110/7227/CG41012 CG41012-PA [Drosophila melanogaster]
U	5854248	5866501	0.01	+	.	ID=DGIL_AUG30_p3.U.g252.t1; prot=CAD32253/7227/gag-pol polyprotein precursor;  hypothetical protein [Drosophila melanogaster]
U	5866506	5868727	0.1	-	.	ID=DGIL_AUG30_p3.U.g253.t1; prot=AAA28508/7227/reverse transcriptase (put.);  putative
U	5873358	5876469	0.02	+	.	ID=DGIL_AUG30_p3.U.g254.t1; prot=AAK52059/7227/envelope protein [Drosophila melanogaster]
U	5880950	5883927	0.14	-	.	ID=DGIL_AUG30_p3.U.g257.t1; prot=P21328/7227/RNA-directed DNA polymerase from mobile element jockey (Reverse transcriptase)
U	5885708	5887822	0.04	+	.	ID=DGIL_AUG30_p3.U.g259.t1; prot=AAL90009/7227/AT07338p [Drosophila melanogaster]
U	5891948	5892879	0.31	+	.	ID=DGIL_AUG30_p3.U.g260.t1; prot=CAA65152/7227/orf [Drosophila melanogaster]
U	5893007	5900705	0.02	-	.	ID=DGIL_AUG30_p4.U.g12.t1; evd_pTF=; prot=XP_001056169/10116/PREDICTED: similar to CG40323-PB.3 [Rattus norvegicus]
U	5905055	5909075	0.04	-	.	ID=DGIL_AUG30_p4.U.g13.t1; prot=ZP_00374049/307502/Zinc finger, C3HC4 type (RING finger) domain protein [Wolbachia endosymbiont of Drosophila ananassae]
U	5912596	5913590	0.1	+	.	ID=DGIL_AUG30_p4.U.g14.t1; prot=ZP_00374049/307502/Zinc finger, C3HC4 type (RING finger) domain protein [Wolbachia endosymbiont of Drosophila ananassae]
U	5914426	5916840	0.14	+	.	ID=DGIL_AUG30_p4.U.g15.t1; prot=P16425/7227/Putative 115 kDa protein in type-1 retrotransposable element R1DM (Putative 115 kDa protein in type I retrotransposable element R1DM) (ORF 2)
U	5917488	5923475	0.01	-	.	ID=DGIL_AUG30_p4.U.g16.t1; prot=AAK52055/7227/RNA-directed DNA polymerase [Drosophila melanogaster]
U	5936829	5937305	0.09	-	.	ID=DGIL_AUG30_p4.U.g17.t1; prot=NP_001104163/7227/CG40856 CG40856-PA [Drosophila melanogaster]
U	5937370	5939455	0.06	-	.	ID=DGIL_AUG30_p4.U.g18.t1; prot=CAD32253/7227/gag-pol polyprotein precursor;  hypothetical protein [Drosophila melanogaster]
U	5953916	5954508	0.64	+	.	ID=DGIL_AUG30_p4.U.g21.t1; prot=NP_001015297/7227/CG40124 CG40124-PA [Drosophila melanogaster]
U	5954517	5958515	0.79	-	.	ID=DGIL_AUG30_p4.U.g22.t1; prot=ZP_00373731/307502/gag protein [Wolbachia endosymbiont of Drosophila ananassae]
U	5960006	5962498	0.02	+	.	ID=DGIL_AUG30_p4.U.g23.t1; prot=CAA08806/7227/Gag protein [Drosophila melanogaster]
U	5964852	5982355	0.01	-	.	ID=DGIL_AUG30_p4.U.g24.t1; prot=AAN87269/7227/ORF [Drosophila melanogaster]
U	5982402	5983005	0.3	-	.	ID=DGIL_AUG30_p4.U.g25.t1; prot=AAN87269/7227/ORF [Drosophila melanogaster]
U	5985052	5985875	0.13	-	.	ID=DGIL_AUG30_p4.U.g26.t1; prot=ZP_00373877/307502/Zinc knuckle domain protein [Wolbachia endosymbiont of Drosophila ananassae]
U	5986406	5990045	0.03	+	.	ID=DGIL_AUG30_p4.U.g27.t1; prot=NP_001104441/7227/CG41392 CG41392-PA [Drosophila melanogaster]
U	5999758	6002675	0.11	-	.	ID=DGIL_AUG30_p4.U.g31.t1; prot=P21329/7221/RNA-directed DNA polymerase from mobile element jockey (Reverse transcriptase)
U	6006766	6007630	0.1	+	.	ID=DGIL_AUG30_p4.U.g34.t1; prot=S18211/7244/hypothetical protein 2 - fruit fly (Drosophila virilis) retrotransposon Ulysses
U	6008146	6008800	0.74	+	.	ID=DGIL_AUG30_p4.U.g36.t1; prot=ZP_00373653/307502/indora [Wolbachia endosymbiont of Drosophila ananassae]
U	6009236	6011280	0.05	+	.	ID=DGIL_AUG30_p4.U.g37.t1; prot=AAK77263/7227/GH03753p [Drosophila melanogaster]
U	6027227	6028155	0.14	-	.	ID=DGIL_AUG30_p4.U.g46.t1; prot=ABD72267/7264/pol polyprotein [Drosophila buzzatii]
U	6028237	6030595	0.02	-	.	ID=DGIL_AUG30_p4.U.g47.t1; prot=NP_001104110/7227/CG41012 CG41012-PA [Drosophila melanogaster]
U	6030696	6033723	0.01	+	.	ID=DGIL_AUG30_p4.U.g48.t1; est=CK135373; prot=AAA28508/7227/reverse transcriptase (put.);  putative
U	6040933	6041873	0.01	-	.	ID=DGIL_AUG30_p4.U.g49.t1; prot=NP_001104121/7227/CG41018 CG41018-PA [Drosophila melanogaster]
U	6054913	6058393	0.02	-	.	ID=DGIL_AUG30_p4.U.g51.t1; prot=P16425/7227/Putative 115 kDa protein in type-1 retrotransposable element R1DM (Putative 115 kDa protein in type I retrotransposable element R1DM) (ORF 2)
U	6058508	6060443	0.21	-	.	ID=DGIL_AUG30_p4.U.g52.t1; prot=P16425/7227/Putative 115 kDa protein in type-1 retrotransposable element R1DM (Putative 115 kDa protein in type I retrotransposable element R1DM) (ORF 2)
U	6060495	6068973	0.01	-	.	ID=DGIL_AUG30_p4.U.g53.t1; prot=XP_001621485/45351/hypothetical protein NEMVEDRAFT_v1g144708 [Nematostella vectensis]
U	6069084	6076474	0.01	+	.	ID=DGIL_AUG30_p4.U.g54.t1; prot=XP_308478/180454/AGAP007349-PA [Anopheles gambiae str. PEST]
U	6101134	6106823	0.01	+	.	ID=DGIL_AUG30_p4.U.g56.t1; prot=BAD01589/7240/hypothetical protein [Drosophila simulans]
U	6106895	6107673	0.03	-	.	ID=DGIL_AUG30_p4.U.g57.t1; prot=P21328/7227/RNA-directed DNA polymerase from mobile element jockey (Reverse transcriptase)
U	6109104	6112079	0.4	+	.	ID=DGIL_AUG30_p4.U.g58.t1; est=BG635652; prot=AAA28508/7227/reverse transcriptase (put.);  putative
U	6112454	6113238	0.11	+	.	ID=DGIL_AUG30_p4.U.g59.t1; prot=NP_001015295/7227/CG40122 CG40122-PA [Drosophila melanogaster]
U	6117645	6119183	0.08	-	.	ID=DGIL_AUG30_p4.U.g61.t1; prot=CAA32198/7227/polyprotein [Drosophila melanogaster]
U	6121054	6121913	0.19	+	.	ID=DGIL_AUG30_p4.U.g62.t1; prot=S00953/7227/gag protein - fruit fly (Drosophila melanogaster) transposon 1731
U	6134474	6139918	0.12	+	.	ID=DGIL_AUG30_p4.U.g63.t1; prot=CAA65152/7227/orf [Drosophila melanogaster]
U	6144114	6147587	0.02	+	.	ID=DGIL_AUG30_p4.U.g65.t1; prot=ZP_00373812/307502/putative retrovirus-like env glycoprotein [Wolbachia endosymbiont of Drosophila ananassae]
U	6153632	6154783	0.38	-	.	ID=DGIL_AUG30_p4.U.g68.t1; prot=AAC28743/7213/pol-like protein [Ceratitis capitata]
U	6168994	6169523	0.1	-	.	ID=DGIL_AUG30_p4.U.g71.t1; prot=NP_001104089/7227/CG41573 CG41573-PA [Drosophila melanogaster]
U	6188044	6218393	0.01	-	.	ID=DGIL_AUG30_p4.U.g76.t1; prot=P16424/7227/Uncharacterized 50 kDa protein in type I retrotransposable element R1DM (ORF 1)
U	6222434	6228868	0.01	+	.	ID=DGIL_AUG30_p4.U.g77.t1; est=BF491970,BF491970,BF491970; prot=AAK52055/7227/RNA-directed DNA polymerase [Drosophila melanogaster]
U	6232831	6242814	0.01	-	.	ID=DGIL_AUG30_p4.U.g78.t1; est=AI532388,BI633183,AI542096; prot=P16425/7227/Putative 115 kDa protein in type-1 retrotransposable element R1DM (Putative 115 kDa protein in type I retrotransposable element R1DM) (ORF 2)
U	6243441	6256484	0.04	-	.	ID=DGIL_AUG30_p4.U.g79.t1; est=BI573639; prot=P16424/7227/Uncharacterized 50 kDa protein in type I retrotransposable element R1DM (ORF 1)
U	6276445	6277679	0.01	+	.	ID=DGIL_AUG30_p4.U.g82.t1; prot=NP_001104160/7227/CG40924 CG40924-PA [Drosophila melanogaster]
U	6292895	6294297	0.08	+	.	ID=DGIL_AUG30_p4.U.g84.t1; prot=CAJ13338/7227/pol protein [Drosophila melanogaster]
U	6308068	6316524	0.02	-	.	ID=DGIL_AUG30_p4.U.g86.t1; prot=YP_001468215/266940/hypothetical protein Krad_4632 [Kineococcus radiotolerans SRS30216]
U	6316625	6317799	0.12	+	.	ID=DGIL_AUG30_p4.U.g87.t1; prot=ABD72267/7264/pol polyprotein [Drosophila buzzatii]
U	6317806	6321694	0.15	-	.	ID=DGIL_AUG30_p4.U.g88.t1; prot=NP_608731/7227/CG9641 CG9641-PA, isoform A [Drosophila melanogaster]
U	6354865	6356068	0.05	+	.	ID=DGIL_AUG30_p4.U.g92.t1; prot=CAA04050/7227/RNase H;  integrase;  protease;  reverse transcriptase [Drosophila melanogaster]
U	6381095	6386183	0.01	+	.	ID=DGIL_AUG30_p4.U.g94.t1; est=CO338820,CO338820; prot=CAD32253/7227/gag-pol polyprotein precursor;  hypothetical protein [Drosophila melanogaster]
U	6389565	6392089	0.13	+	.	ID=DGIL_AUG30_p4.U.g95.t1; prot=CAA32198/7227/polyprotein [Drosophila melanogaster]
U	6392975	6393756	0.08	+	.	ID=DGIL_AUG30_p4.U.g97.t1; prot=CAA32198/7227/polyprotein [Drosophila melanogaster]
U	6401758	6404331	0.01	-	.	ID=DGIL_AUG30_p4.U.g98.t1; est=BP544535; prot=ABD72267/7264/pol polyprotein [Drosophila buzzatii]
U	6404872	6407589	0.07	+	.	ID=DGIL_AUG30_p4.U.g99.t1; prot=ZP_00373813/307502/reverse transcriptase polyprotein [Wolbachia endosymbiont of Drosophila ananassae]
U	6407627	6426061	0.01	-	.	ID=DGIL_AUG30_p4.U.g100.t1; prot=XP_001056169/10116/PREDICTED: similar to CG40323-PB.3 [Rattus norvegicus]
U	6426642	6428220	0.04	+	.	ID=DGIL_AUG30_p4.U.g101.t1; prot=Q967S7/7227/Retrovirus-related Gag polyprotein from transposon HMS-Beagle
U	6443173	6443911	0.42	-	.	ID=DGIL_AUG30_p4.U.g103.t1; prot=BAA01703/7240/unnamed protein product [Drosophila simulans]
U	6485212	6487598	0.01	+	.	ID=DGIL_AUG30_p4.U.g106.t1; prot=ZP_00373813/307502/reverse transcriptase polyprotein [Wolbachia endosymbiont of Drosophila ananassae]
U	6492752	6494241	0.08	+	.	ID=DGIL_AUG30_p4.U.g107.t1; prot=AAY54796/7227/IP11523p [Drosophila melanogaster]
U	6495140	6496051	0.02	-	.	ID=DGIL_AUG30_p4.U.g108.t1; prot=ZP_00373653/307502/indora [Wolbachia endosymbiont of Drosophila ananassae]
U	6503893	6508281	0.01	-	.	ID=DGIL_AUG30_p4.U.g111.t1; est=CK135709; prot=AAM51136/7227/SD26211p [Drosophila melanogaster]
U	6509452	6512956	0.03	+	.	ID=DGIL_AUG30_p4.U.g112.t1; prot=P16424/7227/Uncharacterized 50 kDa protein in type I retrotransposable element R1DM (ORF 1)
U	6512973	6520661	0.07	-	.	ID=DGIL_AUG30_p4.U.g113.t1; est=BI588798,BI588798; prot=XP_001601929/7425/PREDICTED: similar to BEL12_AG transposon polyprotein [Nasonia vitripennis]
U	6521857	6522721	0.13	-	.	ID=DGIL_AUG30_p4.U.g114.t1; prot=NP_001015277/7227/CG40138 CG40138-PA [Drosophila melanogaster]
U	6525842	6527386	0.05	+	.	ID=DGIL_AUG30_p4.U.g116.t1; prot=ABY50130/7240/Gag-like protein [Drosophila simulans]
U	6544502	6548877	0.05	+	.	ID=DGIL_AUG30_p4.U.g119.t1; est=BI624284,BI626084; prot=P16425/7227/Putative 115 kDa protein in type-1 retrotransposable element R1DM (Putative 115 kDa protein in type I retrotransposable element R1DM) (ORF 2)
U	6549012	6550361	0.04	+	.	ID=DGIL_AUG30_p4.U.g120.t1; prot=P16424/7227/Uncharacterized 50 kDa protein in type I retrotransposable element R1DM (ORF 1)
U	6553082	6555605	0.15	+	.	ID=DGIL_AUG30_p4.U.g121.t1; prot=CAA81643/7227/blastopia polyprotein [Drosophila melanogaster]
U	6593064	6593868	0.5	+	.	ID=DGIL_AUG30_p4.U.g127.t1; prot=AAY54796/7227/IP11523p [Drosophila melanogaster]
U	6593875	6595673	0.13	-	.	ID=DGIL_AUG30_p4.U.g128.t1; prot=ABD72267/7264/pol polyprotein [Drosophila buzzatii]
U	6636524	6642718	0.01	+	.	ID=DGIL_AUG30_p4.U.g131.t1; prot=P16423/7227/Retrovirus-related Pol polyprotein from type-2 retrotransposable element R2DM (Retrovirus-related Pol polyprotein from type II retrotransposable element R2DM) [Includes: Protease ;  Reverse transcriptase ;  Endonuclease]
U	6643345	6646383	0.03	-	.	ID=DGIL_AUG30_p4.U.g133.t1; prot=P16425/7227/Putative 115 kDa protein in type-1 retrotransposable element R1DM (Putative 115 kDa protein in type I retrotransposable element R1DM) (ORF 2)
U	6648084	6649603	0.17	+	.	ID=DGIL_AUG30_p4.U.g134.t1; prot=AAL90081/7227/AT16518p [Drosophila melanogaster]
U	6650486	6658723	0.01	-	.	ID=DGIL_AUG30_p4.U.g135.t1; prot=P16425/7227/Putative 115 kDa protein in type-1 retrotransposable element R1DM (Putative 115 kDa protein in type I retrotransposable element R1DM) (ORF 2)
U	6672119	6674643	0.02	-	.	ID=DGIL_AUG30_p4.U.g137.t1; est=BI621493; prot=Q95SX7/7227/Probable RNA-directed DNA polymerase from transposon BS (Reverse transcriptase)
U	6674740	6677303	0.1	-	.	ID=DGIL_AUG30_p4.U.g138.t1; prot=CAA32198/7227/polyprotein [Drosophila melanogaster]
U	6697224	6708218	0.06	+	.	ID=DGIL_AUG30_p4.U.g141.t1; prot=AAL25501/7227/SD04061p [Drosophila melanogaster]
U	6708226	6730283	0.01	-	.	ID=DGIL_AUG30_p4.U.g142.t1; prot=NP_001104166/7227/CG40635 CG40635-PA [Drosophila melanogaster]
U	6739614	6740218	0.74	+	.	ID=DGIL_AUG30_p4.U.g143.t1; prot=AAT47767/7227/RE14563p [Drosophila melanogaster]
U	6741584	6743014	0.49	+	.	ID=DGIL_AUG30_p4.U.g144.t1; prot=NP_001104340/7227/CG41519 CG41519-PB, isoform B [Drosophila melanogaster]
U	6747013	6752908	0.03	-	.	ID=DGIL_AUG30_p4.U.g145.t1; prot=P16425/7227/Putative 115 kDa protein in type-1 retrotransposable element R1DM (Putative 115 kDa protein in type I retrotransposable element R1DM) (ORF 2)
U	6752970	6754658	0.15	-	.	ID=DGIL_AUG30_p4.U.g146.t1; prot=ABD72267/7264/pol polyprotein [Drosophila buzzatii]
U	6754997	6756968	0.09	-	.	ID=DGIL_AUG30_p4.U.g147.t1; prot=NP_001104125/7227/CG40820 CG40820-PA [Drosophila melanogaster]
U	6768079	6770017	0.04	+	.	ID=DGIL_AUG30_p4.U.g151.t1; prot=NP_001104403/7227/CG40001 CG40001-PB, isoform B [Drosophila melanogaster]
U	6798512	6804158	0.3	-	.	ID=DGIL_AUG30_p4.U.g153.t1; prot=NP_001104091/7227/CG40818 CG40818-PA [Drosophila melanogaster]
U	6808519	6822335	0.02	+	.	ID=DGIL_AUG30_p4.U.g155.t1; prot=AAL57609/7227/reverse transcriptase [Drosophila melanogaster]
U	6822499	6823641	0.03	+	.	ID=DGIL_AUG30_p4.U.g156.t1; prot=NP_649263/7227/CG12452 CG12452-PA [Drosophila melanogaster]
U	6827630	6831978	0.02	-	.	ID=DGIL_AUG30_p4.U.g159.t1; prot=XP_001056169/10116/PREDICTED: similar to CG40323-PB.3 [Rattus norvegicus]
U	6833007	6836838	0.06	-	.	ID=DGIL_AUG30_p4.U.g160.t1; est=BP553572; prot=P16425/7227/Putative 115 kDa protein in type-1 retrotransposable element R1DM (Putative 115 kDa protein in type I retrotransposable element R1DM) (ORF 2)
U	6837649	6846403	0.03	+	.	ID=DGIL_AUG30_p4.U.g161.t1; prot=P16425/7227/Putative 115 kDa protein in type-1 retrotransposable element R1DM (Putative 115 kDa protein in type I retrotransposable element R1DM) (ORF 2)
U	6851799	6865583	0.04	+	.	ID=DGIL_AUG30_p4.U.g163.t1; prot=NP_001015215/7227/CG40158 CG40158-PA [Drosophila melanogaster]
U	6865600	6871538	0.01	-	.	ID=DGIL_AUG30_p4.U.g164.t1; prot=XP_001056169/10116/PREDICTED: similar to CG40323-PB.3 [Rattus norvegicus]
U	6886019	6886463	0.07	+	.	ID=DGIL_AUG30_p4.U.g166.t1; prot=BAA19772/7240/unnamed protein product [Drosophila simulans]
U	6886919	6887313	0.32	+	.	ID=DGIL_AUG30_p4.U.g168.t1; prot=BAD01589/7240/hypothetical protein [Drosophila simulans]
U	6887320	6889738	0.08	-	.	ID=DGIL_AUG30_p4.U.g169.t1; prot=ABY50130/7240/Gag-like protein [Drosophila simulans]
U	6892661	6895458	0.03	-	.	ID=DGIL_AUG30_p4.U.g171.t1; prot=AAB66824/7244/Tel1 [Drosophila virilis]
U	6905069	6906079	0.18	+	.	ID=DGIL_AUG30_p4.U.g174.t1; prot=AAC17188/7227/probable gag protein [Drosophila melanogaster]
U	6908780	6912118	0.01	-	.	ID=DGIL_AUG30_p4.U.g175.t1; prot=P16424/7227/Uncharacterized 50 kDa protein in type I retrotransposable element R1DM (ORF 1)
U	6913019	6921960	0.01	+	.	ID=DGIL_AUG30_p4.U.g176.t1; est=AI542706; prot=BAD01589/7240/hypothetical protein [Drosophila simulans]
U	6936788	6943362	0.01	+	.	ID=DGIL_AUG30_p4.U.g177.t1; prot=S00953/7227/gag protein - fruit fly (Drosophila melanogaster) transposon 1731
U	6943998	6946889	0.07	+	.	ID=DGIL_AUG30_p4.U.g179.t1; prot=NP_001104146/7227/CG40950 CG40950-PA [Drosophila melanogaster]
U	6972988	6973617	0.02	-	.	ID=DGIL_AUG30_p4.U.g182.t1; prot=AAK84933/7227/SD02026p [Drosophila melanogaster]
U	6973693	6974737	0.2	-	.	ID=DGIL_AUG30_p4.U.g183.t1; prot=NP_001104146/7227/CG40950 CG40950-PA [Drosophila melanogaster]
U	6974847	6975137	0.76	-	.	ID=DGIL_AUG30_p4.U.g184.t1; prot=NP_001104128/7227/CG41584 CG41584-PA [Drosophila melanogaster]
U	6976338	6977777	0.11	+	.	ID=DGIL_AUG30_p4.U.g185.t1; prot=CAJ13338/7227/pol protein [Drosophila melanogaster]
U	6988988	6990056	0.07	+	.	ID=DGIL_AUG30_p4.U.g187.t1; prot=AAM11090/7227/GH28553p [Drosophila melanogaster]
U	6992721	6998087	0.31	-	.	ID=DGIL_AUG30_p4.U.g189.t1; prot=BAD01589/7240/hypothetical protein [Drosophila simulans]
U	6998198	7008791	0.01	+	.	ID=DGIL_AUG30_p4.U.g190.t1; est=BI581160,BI581365,BI581487; prot=XP_001177440/7668/PREDICTED: hypothetical protein, partial [Strongylocentrotus purpuratus]
U	7025279	7038057	0.01	-	.	ID=DGIL_AUG30_p4.U.g194.t1; prot=P16425/7227/Putative 115 kDa protein in type-1 retrotransposable element R1DM (Putative 115 kDa protein in type I retrotransposable element R1DM) (ORF 2)
U	7038846	7041537	0.02	-	.	ID=DGIL_AUG30_p4.U.g195.t1; prot=AAL29132/7227/SD03311p [Drosophila melanogaster]
U	7045328	7046772	0.01	+	.	ID=DGIL_AUG30_p4.U.g197.t1; prot=NP_001104160/7227/CG40924 CG40924-PA [Drosophila melanogaster]
U	7046896	7048817	0.14	-	.	ID=DGIL_AUG30_p4.U.g198.t1; est=BI567061,BI587660; prot=P16425/7227/Putative 115 kDa protein in type-1 retrotransposable element R1DM (Putative 115 kDa protein in type I retrotransposable element R1DM) (ORF 2)
U	7082529	7086327	0.01	-	.	ID=DGIL_AUG30_p4.U.g199.t1; prot=P16425/7227/Putative 115 kDa protein in type-1 retrotransposable element R1DM (Putative 115 kDa protein in type I retrotransposable element R1DM) (ORF 2)
U	7105294	7113007	0.04	-	.	ID=DGIL_AUG30_p4.U.g203.t1; prot=CAB99191/7227/gag-like protein [Drosophila melanogaster]
U	7113298	7122347	0.01	+	.	ID=DGIL_AUG30_p4.U.g204.t1; prot=XP_001056169/10116/PREDICTED: similar to CG40323-PB.3 [Rattus norvegicus]
U	7122408	7123929	0.02	+	.	ID=DGIL_AUG30_p4.U.g205.t1; prot=ZP_00373731/307502/gag protein [Wolbachia endosymbiont of Drosophila ananassae]
U	7123949	7127027	0.01	-	.	ID=DGIL_AUG30_p4.U.g206.t1; prot=AAS13459/7240/putative reverse transcriptase [Drosophila simulans]
U	7130908	7131422	0.06	+	.	ID=DGIL_AUG30_p4.U.g208.t1; prot=ABD72267/7264/pol polyprotein [Drosophila buzzatii]
U	7131878	7132532	0.07	+	.	ID=DGIL_AUG30_p4.U.g209.t1; prot=S18211/7244/hypothetical protein 2 - fruit fly (Drosophila virilis) retrotransposon Ulysses
U	7133168	7133542	0.33	+	.	ID=DGIL_AUG30_p4.U.g211.t1; prot=ZP_00373653/307502/indora [Wolbachia endosymbiont of Drosophila ananassae]
U	7133549	7143897	0.08	-	.	ID=DGIL_AUG30_p4.U.g212.t1; prot=ZP_00373813/307502/reverse transcriptase polyprotein [Wolbachia endosymbiont of Drosophila ananassae]
U	7181758	7184332	0.47	+	.	ID=DGIL_AUG30_p4.U.g214.t1; prot=AAN34651/7227/pol protein [Drosophila melanogaster]
U	7186558	7188125	0.09	+	.	ID=DGIL_AUG30_p4.U.g216.t1; prot=P16425/7227/Putative 115 kDa protein in type-1 retrotransposable element R1DM (Putative 115 kDa protein in type I retrotransposable element R1DM) (ORF 2)
U	7189728	7193522	0.01	+	.	ID=DGIL_AUG30_p4.U.g218.t1; prot=BAA57030/7240/unnamed protein product [Drosophila simulans]
U	7210998	7216922	0.03	+	.	ID=DGIL_AUG30_p4.U.g222.t1; prot=P16424/7227/Uncharacterized 50 kDa protein in type I retrotransposable element R1DM (ORF 1)
U	7217359	7223057	0.01	-	.	ID=DGIL_AUG30_p4.U.g223.t1; est=BI607365; prot=AAC28744/7213/env-like protein [Ceratitis capitata]
U	7225907	7228157	0.27	-	.	ID=DGIL_AUG30_p4.U.g224.t1; prot=CAA08807/7227/Pol protein [Drosophila melanogaster]
U	7228778	7230810	0.14	+	.	ID=DGIL_AUG30_p4.U.g225.t1; prot=XP_001599606/7425/PREDICTED: similar to polyprotein [Nasonia vitripennis]
U	7232328	7234836	0.02	+	.	ID=DGIL_AUG30_p4.U.g227.t1; prot=AAK52056/7227/envelope protein [Drosophila melanogaster]
U	7236678	7238568	0.02	+	.	ID=DGIL_AUG30_p4.U.g229.t1; prot=Q95SX7/7227/Probable RNA-directed DNA polymerase from transposon BS (Reverse transcriptase)
U	7257118	7259766	0.08	+	.	ID=DGIL_AUG30_p4.U.g233.t1; prot=CAG25619/7227/gag protein [Drosophila melanogaster]
U	7262429	7284297	0.01	-	.	ID=DGIL_AUG30_p4.U.g234.t1; prot=BAD01589/7240/hypothetical protein [Drosophila simulans]
U	7312954	7319822	0.05	-	.	ID=DGIL_AUG30_p4.U.g239.t1; prot=NP_001104110/7227/CG41012 CG41012-PA [Drosophila melanogaster]
U	7327193	7330627	0.01	+	.	ID=DGIL_AUG30_p4.U.g240.t1; prot=AAA28508/7227/reverse transcriptase (put.);  putative
U	7331513	7332902	0.04	-	.	ID=DGIL_AUG30_p4.U.g241.t1; prot=NP_001104418/7227/CG40120 CG40120-PB, isoform B [Drosophila melanogaster]
U	7338687	7348672	0.16	-	.	ID=DGIL_AUG30_p4.U.g243.t1; prot=CAA32198/7227/polyprotein [Drosophila melanogaster]
U	7350403	7353837	0.03	+	.	ID=DGIL_AUG30_p4.U.g244.t1; prot=XP_794717/7668/PREDICTED: similar to transposase [Strongylocentrotus purpuratus]
U	7358494	7360292	0.03	-	.	ID=DGIL_AUG30_p4.U.g245.t1; prot=AAA70222/7227/putative ORF2 [Drosophila melanogaster]
U	7361293	7369022	0.01	-	.	ID=DGIL_AUG30_p4.U.g246.t1; prot=CAD32253/7227/gag-pol polyprotein precursor;  hypothetical protein [Drosophila melanogaster]
U	7369123	7375297	0.01	+	.	ID=DGIL_AUG30_p4.U.g247.t1; prot=AAK52057/7227/gag protein [Drosophila melanogaster]
U	7388732	7398082	0.01	-	.	ID=DGIL_AUG30_p4.U.g249.t1; prot=NP_001104089/7227/CG41573 CG41573-PA [Drosophila melanogaster]
U	7400923	7403617	0.03	+	.	ID=DGIL_AUG30_p4.U.g250.t1; prot=XP_001056169/10116/PREDICTED: similar to CG40323-PB.3 [Rattus norvegicus]
U	7415924	7421592	0.03	-	.	ID=DGIL_AUG30_p4.U.g253.t1; prot=CAD32253/7227/gag-pol polyprotein precursor;  hypothetical protein [Drosophila melanogaster]
U	7425113	7427297	0.07	+	.	ID=DGIL_AUG30_p4.U.g255.t1; prot=P16424/7227/Uncharacterized 50 kDa protein in type I retrotransposable element R1DM (ORF 1)
U	7432194	7433212	0.09	-	.	ID=DGIL_AUG30_p4.U.g257.t1; prot=NP_001015277/7227/CG40138 CG40138-PA [Drosophila melanogaster]
U	7458743	7461517	0.14	+	.	ID=DGIL_AUG30_p4.U.g259.t1; prot=CAA65152/7227/orf [Drosophila melanogaster]
U	7461555	7466112	0.06	-	.	ID=DGIL_AUG30_p4.U.g260.t1; prot=XP_001621485/45351/hypothetical protein NEMVEDRAFT_v1g144708 [Nematostella vectensis]
U	7483899	7487062	0.14	-	.	ID=DGIL_AUG30_p4.U.g263.t1; prot=ZP_00373813/307502/reverse transcriptase polyprotein [Wolbachia endosymbiont of Drosophila ananassae]
U	7495777	7496355	0.37	-	.	ID=DGIL_AUG30_p4.U.g264.t1; prot=XP_671003/5823/hypothetical protein PB401108.00.0 [Plasmodium berghei strain ANKA]
U	7510526	7514770	0.06	+	.	ID=DGIL_AUG30_p4.U.g268.t1; prot=CAB99192/7227/endonuclease/reverse transcriptase [Drosophila melanogaster]
U	7532134	7537125	0.07	-	.	ID=DGIL_AUG30_p4.U.g270.t1; est=EC066358,EC081302,EC207686,EC208150,EC208151,EC242548,EC253970,EC259401,CO262718,CO263018,CO263030,CO285879,CO289483,CO309210,CO341717; prot=Q9NBX5/7227/Nucleic-acid-binding protein from transposon X-element
U	7539990	7543915	0.07	-	.	ID=DGIL_AUG30_p4.U.g271.t1; est=EC261437,EC261437,EC261437,EC268053,EC268053,BG636280,BG636280,BG636637,BG636637,BG636637,BG637047,BG637047,BG637047,BG637135,BG637135,more; prot=Q95SX7/7227/Probable RNA-directed DNA polymerase from transposon BS (Reverse transcriptase)
U	7549271	7556735	0.05	-	.	ID=DGIL_AUG30_p4.U.g272.t1; est=BI617342,BI619956; prot=P16425/7227/Putative 115 kDa protein in type-1 retrotransposable element R1DM (Putative 115 kDa protein in type I retrotransposable element R1DM) (ORF 2)
U	7597086	7598299	0.05	+	.	ID=DGIL_AUG30_p4.U.g274.t1; prot=ZP_00373653/307502/indora [Wolbachia endosymbiont of Drosophila ananassae]
U	7602466	7603622	0.25	+	.	ID=DGIL_AUG30_p4.U.g275.t1; prot=NP_001104146/7227/CG40950 CG40950-PA [Drosophila melanogaster]
U	7606486	7607430	0.09	+	.	ID=DGIL_AUG30_p4.U.g277.t1; est=BF496549,BF496549,BF496549; prot=AAM29329/7227/AT28829p [Drosophila melanogaster]
U	7612897	7617325	0.01	-	.	ID=DGIL_AUG30_p4.U.g279.t1; prot=ZP_00373653/307502/indora [Wolbachia endosymbiont of Drosophila ananassae]
U	7644000	7659105	0.03	-	.	ID=DGIL_AUG30_p4.U.g282.t1; prot=P16425/7227/Putative 115 kDa protein in type-1 retrotransposable element R1DM (Putative 115 kDa protein in type I retrotransposable element R1DM) (ORF 2)
U	7702812	7705166	0.07	+	.	ID=DGIL_AUG30_p4.U.g285.t1; prot=CAD32253/7227/gag-pol polyprotein precursor;  hypothetical protein [Drosophila melanogaster]
U	7708602	7713678	0.02	+	.	ID=DGIL_AUG30_p4.U.g288.t1; prot=XP_001056169/10116/PREDICTED: similar to CG40323-PB.3 [Rattus norvegicus]
U	7741572	7748636	0.2	+	.	ID=DGIL_AUG30_p4.U.g292.t1; prot=Q9NBX5/7227/Nucleic-acid-binding protein from transposon X-element
U	7748722	7749466	0.07	+	.	ID=DGIL_AUG30_p4.U.g293.t1; prot=AAY55125/7227/IP07237p [Drosophila melanogaster]
U	7755862	7760184	0.02	+	.	ID=DGIL_AUG30_p4.U.g296.t1; prot=CAD32253/7227/gag-pol polyprotein precursor;  hypothetical protein [Drosophila melanogaster]
U	7764842	7771050	0.01	+	.	ID=DGIL_AUG30_p4.U.g297.t1; prot=NP_001104063/7227/CG40758 CG40758-PA [Drosophila melanogaster]
U	7777924	7779381	0.33	-	.	ID=DGIL_AUG30_p4.U.g299.t1; prot=NP_001104125/7227/CG40820 CG40820-PA [Drosophila melanogaster]
U	7780147	7780951	0.15	-	.	ID=DGIL_AUG30_p4.U.g300.t1; prot=AAC28744/7213/env-like protein [Ceratitis capitata]
U	7784742	7788868	0.05	+	.	ID=DGIL_AUG30_p4.U.g302.t1; prot=P16425/7227/Putative 115 kDa protein in type-1 retrotransposable element R1DM (Putative 115 kDa protein in type I retrotransposable element R1DM) (ORF 2)
U	7789052	7790714	0.05	+	.	ID=DGIL_AUG30_p4.U.g303.t1; prot=S18211/7244/hypothetical protein 2 - fruit fly (Drosophila virilis) retrotransposon Ulysses
U	7819957	7826391	0.05	-	.	ID=DGIL_AUG30_p4.U.g307.t1; prot=XP_001056169/10116/PREDICTED: similar to CG40323-PB.3 [Rattus norvegicus]
U	7828212	7829956	0.1	+	.	ID=DGIL_AUG30_p4.U.g308.t1; prot=NP_001104087/7227/CG41556 CG41556-PA [Drosophila melanogaster]
U	7830093	7835171	0.02	-	.	ID=DGIL_AUG30_p4.U.g309.t1; prot=NP_001104065/7227/CG41524 CG41524-PA [Drosophila melanogaster]
U	7837206	7837981	0.1	-	.	ID=DGIL_AUG30_p4.U.g310.t1; prot=NP_001104367/7227/CG41603 CG41603-PA [Drosophila melanogaster]
U	7848287	7851835	0.02	-	.	ID=DGIL_AUG30_p5.U.g10.t1; prot=CAB99191/7227/gag-like protein [Drosophila melanogaster]
U	7855507	7856485	0.18	-	.	ID=DGIL_AUG30_p5.U.g11.t1; prot=ZP_00373812/307502/putative retrovirus-like env glycoprotein [Wolbachia endosymbiont of Drosophila ananassae]
U	7856726	7858334	0.01	+	.	ID=DGIL_AUG30_p5.U.g12.t1; prot=CAD32253/7227/gag-pol polyprotein precursor;  hypothetical protein [Drosophila melanogaster]
U	7884576	7888525	0.02	-	.	ID=DGIL_AUG30_p5.U.g14.t1; est=EV597768; prot=AAM51136/7227/SD26211p [Drosophila melanogaster]
U	7892378	7896605	0.01	-	.	ID=DGIL_AUG30_p5.U.g16.t1; prot=AAY55125/7227/IP07237p [Drosophila melanogaster]
U	7916975	7922775	0.01	-	.	ID=DGIL_AUG30_p5.U.g18.t1; prot=CAA08806/7227/Gag protein [Drosophila melanogaster]
U	7934156	7941153	0.06	+	.	ID=DGIL_AUG30_p5.U.g20.t1; prot=CAJ14165/7165/BEL12_AG transposon polyprotein [Anopheles gambiae]
U	7950477	7951085	0.34	-	.	ID=DGIL_AUG30_p5.U.g21.t1; prot=NP_001104076/7227/CG41529 CG41529-PA, isoform A [Drosophila melanogaster]
U	7952176	7954185	0.03	+	.	ID=DGIL_AUG30_p5.U.g22.t1; prot=P04282/7227/Retrovirus-related Gag polyprotein from copia-like transposable element 17.6
U	7976839	7977844	0.67	-	.	ID=DGIL_AUG30_p5.U.g24.t1; prot=AAN87269/7227/ORF [Drosophila melanogaster]
U	8018045	8019437	0.07	+	.	ID=DGIL_AUG30_p5.U.g34.t1; prot=CAA65152/7227/orf [Drosophila melanogaster]
U	8019535	8029012	0.09	+	.	ID=DGIL_AUG30_p5.U.g35.t1; prot=CAA81643/7227/blastopia polyprotein [Drosophila melanogaster]
U	8031251	8031784	0.08	-	.	ID=DGIL_AUG30_p5.U.g37.t1; prot=NP_001104032/7227/CG41251 CG41251-PA [Drosophila melanogaster]
U	8053215	8056669	0.04	+	.	ID=DGIL_AUG30_p5.U.g40.t1; prot=CAB99192/7227/endonuclease/reverse transcriptase [Drosophila melanogaster]
U	8078466	8093454	0.02	-	.	ID=DGIL_AUG30_p5.U.g43.t1; est=CO180414,CO180414,CO180414; prot=AAA66527/7227/stellate supressor protein
U	8095625	8118163	0.01	+	.	ID=DGIL_AUG30_p5.U.g44.t1; prot=P16425/7227/Putative 115 kDa protein in type-1 retrotransposable element R1DM (Putative 115 kDa protein in type I retrotransposable element R1DM) (ORF 2)
U	8128366	8129264	0.05	-	.	ID=DGIL_AUG30_p5.U.g47.t1; prot=NP_001104063/7227/CG40758 CG40758-PA [Drosophila melanogaster]
U	8159252	8160388	0.04	-	.	ID=DGIL_AUG30_p5.U.g49.t1; prot=CAD32253/7227/gag-pol polyprotein precursor;  hypothetical protein [Drosophila melanogaster]
U	8180229	8190289	0.01	+	.	ID=DGIL_AUG30_p5.U.g50.t1; prot=NP_001041438/10116/hypothetical protein LOC503325 [Rattus norvegicus]
U	8215959	8225313	0.05	+	.	ID=DGIL_AUG30_p5.U.g53.t1; prot=NP_001104134/7227/CG41038 CG41038-PA [Drosophila melanogaster]
U	8225393	8229088	0.02	-	.	ID=DGIL_AUG30_p5.U.g54.t1; est=BG639783; prot=XP_001056169/10116/PREDICTED: similar to CG40323-PB.3 [Rattus norvegicus]
U	8246639	8247213	0.05	+	.	ID=DGIL_AUG30_p5.U.g57.t1; prot=AAD14609/7250/pol polyprotein [Drosophila immigrans]
U	8254559	8265413	0.01	+	.	ID=DGIL_AUG30_p5.U.g59.t1; prot=XP_001621485/45351/hypothetical protein NEMVEDRAFT_v1g144708 [Nematostella vectensis]
U	8270079	8272453	0.42	+	.	ID=DGIL_AUG30_p5.U.g62.t1; prot=NP_001104160/7227/CG40924 CG40924-PA [Drosophila melanogaster]
U	8272460	8278078	0.06	-	.	ID=DGIL_AUG30_p5.U.g63.t1; prot=ZP_00373730/307502/Prgag-pol, putative [Wolbachia endosymbiont of Drosophila ananassae]
U	8285029	8288624	0.05	+	.	ID=DGIL_AUG30_p5.U.g64.t1; prot=AAC28743/7213/pol-like protein [Ceratitis capitata]
U	8301898	8306982	0.05	+	.	ID=DGIL_AUG30_p5.U.g65.t1; prot=NP_001104110/7227/CG41012 CG41012-PA [Drosophila melanogaster]
U	8307878	8318799	0.01	+	.	ID=DGIL_AUG30_p5.U.g67.t1; prot=BAD01589/7240/hypothetical protein [Drosophila simulans]
U	8326068	8330707	0.15	-	.	ID=DGIL_AUG30_p5.U.g68.t1; prot=ZP_00373813/307502/reverse transcriptase polyprotein [Wolbachia endosymbiont of Drosophila ananassae]
U	8340739	8341607	0.11	-	.	ID=DGIL_AUG30_p5.U.g69.t1; prot=AAK84933/7227/SD02026p [Drosophila melanogaster]
U	8372438	8385452	0.01	+	.	ID=DGIL_AUG30_p5.U.g73.t1; prot=P16425/7227/Putative 115 kDa protein in type-1 retrotransposable element R1DM (Putative 115 kDa protein in type I retrotransposable element R1DM) (ORF 2)
U	8423858	8427181	0.04	+	.	ID=DGIL_AUG30_p5.U.g74.t1; prot=S42806/7227/gag-like polyprotein - fruit fly (Drosophila melanogaster) transposon HeT-A 17B3 (fragment)
U	8440438	8443052	0.02	+	.	ID=DGIL_AUG30_p5.U.g76.t1; prot=CAA08806/7227/Gag protein [Drosophila melanogaster]
U	8443079	8444877	0.14	-	.	ID=DGIL_AUG30_p5.U.g77.t1; prot=AAB50148/7227/reverse transcriptase polyprotein [Drosophila melanogaster]
U	8451457	8454497	0.09	-	.	ID=DGIL_AUG30_p5.U.g80.t1; prot=CAD32253/7227/gag-pol polyprotein precursor;  hypothetical protein [Drosophila melanogaster]
U	8468471	8473354	0.1	+	.	ID=DGIL_AUG30_p5.U.g81.t1; est=EC263944,CO156033; prot=AAC28744/7213/env-like protein [Ceratitis capitata]
U	8491241	8492337	0.09	+	.	ID=DGIL_AUG30_p5.U.g85.t1; prot=NP_001104135/7227/CG41533 CG41533-PA [Drosophila melanogaster]
U	8526674	8528340	0.03	-	.	ID=DGIL_AUG30_p5.U.g90.t1; prot=AAN34648/7227/truncated pol protein [Drosophila melanogaster]
U	8529935	8537080	0.04	-	.	ID=DGIL_AUG30_p5.U.g91.t1; prot=NP_001104032/7227/CG41251 CG41251-PA [Drosophila melanogaster]
U	8537391	8540300	0.12	+	.	ID=DGIL_AUG30_p5.U.g92.t1; prot=XP_001601898/7425/PREDICTED: similar to BEL12_AG transposon polyprotein [Nasonia vitripennis]
U	8541478	8547650	0.01	-	.	ID=DGIL_AUG30_p5.U.g94.t1; est=EC073222,EL881441,EL881626,EL881706; prot=XP_001056169/10116/PREDICTED: similar to CG40323-PB.3 [Rattus norvegicus]
U	8558902	8561410	0.1	-	.	ID=DGIL_AUG30_p5.U.g96.t1; prot=NP_001104125/7227/CG40820 CG40820-PA [Drosophila melanogaster]
U	8568883	8570700	0.01	-	.	ID=DGIL_AUG30_p5.U.g99.t1; prot=BAA57030/7240/unnamed protein product [Drosophila simulans]
U	8589271	8590704	0.01	+	.	ID=DGIL_AUG30_p5.U.g101.t1; prot=NP_001104113/7227/CG40505 CG40505-PA [Drosophila melanogaster]
U	8601281	8607525	0.25	+	.	ID=DGIL_AUG30_p5.U.g102.t1; prot=P16425/7227/Putative 115 kDa protein in type-1 retrotransposable element R1DM (Putative 115 kDa protein in type I retrotransposable element R1DM) (ORF 2)
U	8627707	8630164	0.06	-	.	ID=DGIL_AUG30_p5.U.g105.t1; prot=XP_966151/36329/hypothetical protein PFF0800w [Plasmodium falciparum 3D7]
U	8630325	8644230	0.02	+	.	ID=DGIL_AUG30_p5.U.g106.t1; prot=ABD72267/7264/pol polyprotein [Drosophila buzzatii]
U	8648545	8649192	0.16	+	.	ID=DGIL_AUG30_p5.U.g108.t1; prot=ABD72266/7264/gag polyprotein [Drosophila buzzatii]
U	8656371	8660124	0.39	-	.	ID=DGIL_AUG30_p5.U.g111.t1; prot=XP_001621485/45351/hypothetical protein NEMVEDRAFT_v1g144708 [Nematostella vectensis]
U	8666744	8668174	0.01	-	.	ID=DGIL_AUG30_p5.U.g113.t1; prot=AAA66526/7227/stellate supressor protein
U	8672806	8678564	0.06	-	.	ID=DGIL_AUG30_p5.U.g114.t1; prot=P16424/7227/Uncharacterized 50 kDa protein in type I retrotransposable element R1DM (ORF 1)
U	8692145	8694239	0.02	+	.	ID=DGIL_AUG30_p5.U.g116.t1; prot=ABI48303/7227/pol protein [Drosophila melanogaster]
U	8694295	8699536	0.02	+	.	ID=DGIL_AUG30_p5.U.g117.t1; prot=NP_001104063/7227/CG40758 CG40758-PA [Drosophila melanogaster]
U	8706165	8710972	0.02	+	.	ID=DGIL_AUG30_p5.U.g121.t1; prot=AAM11674/7227/pol protein [Drosophila melanogaster]
U	8711019	8714964	0.05	-	.	ID=DGIL_AUG30_p5.U.g122.t1; prot=AAK77263/7227/GH03753p [Drosophila melanogaster]
U	8715141	8717574	0.02	-	.	ID=DGIL_AUG30_p5.U.g123.t1; prot=CAA08808/7227/envelope protein [Drosophila melanogaster]
U	8760290	8768444	0.03	-	.	ID=DGIL_AUG30_p5.U.g125.t1; prot=BAA57030/7240/unnamed protein product [Drosophila simulans]
U	8774030	8780074	0.02	-	.	ID=DGIL_AUG30_p5.U.g126.t1; prot=P16425/7227/Putative 115 kDa protein in type-1 retrotransposable element R1DM (Putative 115 kDa protein in type I retrotransposable element R1DM) (ORF 2)
U	8784215	8785547	0.18	+	.	ID=DGIL_AUG30_p5.U.g129.t1; prot=AAB47135/7227/Fex [Drosophila melanogaster]
U	8786215	8792630	0.03	+	.	ID=DGIL_AUG30_p5.U.g130.t1; prot=AAN34653/7227/unknown [Drosophila melanogaster]
U	8793001	8794334	0.05	-	.	ID=DGIL_AUG30_p5.U.g131.t1; prot=Q9NBX5/7227/Nucleic-acid-binding protein from transposon X-element
U	8794798	8795474	0.17	-	.	ID=DGIL_AUG30_p5.U.g132.t1; prot=NP_001104128/7227/CG41584 CG41584-PA [Drosophila melanogaster]
U	8808450	8810498	0.04	-	.	ID=DGIL_AUG30_p5.U.g135.t1; prot=ZP_00373813/307502/reverse transcriptase polyprotein [Wolbachia endosymbiont of Drosophila ananassae]
U	8816497	8818478	0.25	-	.	ID=DGIL_AUG30_p5.U.g136.t1; prot=AAN34648/7227/truncated pol protein [Drosophila melanogaster]
U	8822729	8825780	0.07	+	.	ID=DGIL_AUG30_p5.U.g138.t1; prot=CAD32253/7227/gag-pol polyprotein precursor;  hypothetical protein [Drosophila melanogaster]
U	8825849	8830093	0.87	+	.	ID=DGIL_AUG30_p5.U.g139.t1; prot=NP_001015277/7227/CG40138 CG40138-PA [Drosophila melanogaster]
U	8857810	8862628	0.04	-	.	ID=DGIL_AUG30_p5.U.g146.t1; prot=AAK84933/7227/SD02026p [Drosophila melanogaster]
U	8864327	8866678	0.03	-	.	ID=DGIL_AUG30_p5.U.g147.t1; prot=ZP_00373813/307502/reverse transcriptase polyprotein [Wolbachia endosymbiont of Drosophila ananassae]
U	8867170	8867908	0.14	-	.	ID=DGIL_AUG30_p5.U.g148.t1; prot=AAC28743/7213/pol-like protein [Ceratitis capitata]
U	8892189	8900569	0.02	+	.	ID=DGIL_AUG30_p5.U.g149.t1; prot=NP_996426/7227/Ste:CG33242 CG33242-PA [Drosophila melanogaster]
U	8910753	8918388	0.01	-	.	ID=DGIL_AUG30_p5.U.g150.t1; prot=P16425/7227/Putative 115 kDa protein in type-1 retrotransposable element R1DM (Putative 115 kDa protein in type I retrotransposable element R1DM) (ORF 2)
U	8924568	8926538	0.18	-	.	ID=DGIL_AUG30_p5.U.g152.t1; prot=NP_001104067/7227/CG41423 CG41423-PA [Drosophila melanogaster]
U	8926639	8927413	0.04	+	.	ID=DGIL_AUG30_p5.U.g153.t1; prot=XP_001601069/7425/PREDICTED: similar to blastopia polyprotein [Nasonia vitripennis]
U	8929943	8934198	0.29	-	.	ID=DGIL_AUG30_p5.U.g155.t1; prot=CAA04050/7227/RNase H;  integrase;  protease;  reverse transcriptase [Drosophila melanogaster]
U	8945118	8946288	0.1	-	.	ID=DGIL_AUG30_p5.U.g156.t1; prot=NP_001104144/7227/CG40947 CG40947-PA [Drosophila melanogaster]
U	8957799	8958904	0.24	+	.	ID=DGIL_AUG30_p5.U.g161.t1; prot=ZP_00373813/307502/reverse transcriptase polyprotein [Wolbachia endosymbiont of Drosophila ananassae]
U	8965918	8966272	0.25	+	.	ID=DGIL_AUG30_p5.U.g163.t1; prot=ABV82224/7227/IP12923p [Drosophila melanogaster]
U	8974563	8975397	0.06	-	.	ID=DGIL_AUG30_p5.U.g164.t1; prot=NP_727928/7227/CG32580 CG32580-PA [Drosophila melanogaster]
U	8978441	8979507	0.12	-	.	ID=DGIL_AUG30_p5.U.g165.t1; prot=CAD32253/7227/gag-pol polyprotein precursor;  hypothetical protein [Drosophila melanogaster]
U	8980958	8981787	0.05	-	.	ID=DGIL_AUG30_p5.U.g166.t1; prot=AAN34653/7227/unknown [Drosophila melanogaster]
U	8981978	8992305	0.02	+	.	ID=DGIL_AUG30_p5.U.g167.t1; prot=P16425/7227/Putative 115 kDa protein in type-1 retrotransposable element R1DM (Putative 115 kDa protein in type I retrotransposable element R1DM) (ORF 2)
U	8993198	8995003	0.18	+	.	ID=DGIL_AUG30_p5.U.g168.t1; prot=AAY55398/7227/IP08451p [Drosophila melanogaster]
U	8998918	8999597	0.09	+	.	ID=DGIL_AUG30_p5.U.g169.t1; prot=NP_001104163/7227/CG40856 CG40856-PA [Drosophila melanogaster]
U	9008588	9012044	0.17	+	.	ID=DGIL_AUG30_p5.U.g171.t1; prot=XP_001056169/10116/PREDICTED: similar to CG40323-PB.3 [Rattus norvegicus]
U	9012059	9020547	0.05	-	.	ID=DGIL_AUG30_p5.U.g172.t1; prot=CAB99192/7227/endonuclease/reverse transcriptase [Drosophila melanogaster]
U	9024593	9025887	0.04	-	.	ID=DGIL_AUG30_p5.U.g175.t1; prot=NP_996426/7227/Ste:CG33242 CG33242-PA [Drosophila melanogaster]
U	9044448	9045338	0.1	+	.	ID=DGIL_AUG30_p5.U.g177.t1; est=BP544550; prot=P20825/7227/Retrovirus-related Pol polyprotein from transposon 297 [Includes: Protease ;  Reverse transcriptase ;  Endonuclease]
U	9045568	9046222	0.04	+	.	ID=DGIL_AUG30_p5.U.g178.t1; prot=CAA32198/7227/polyprotein [Drosophila melanogaster]
U	9048848	9050037	0.04	+	.	ID=DGIL_AUG30_p5.U.g180.t1; est=AW940178; prot=AAL25501/7227/SD04061p [Drosophila melanogaster]
U	9050070	9059457	0.01	-	.	ID=DGIL_AUG30_p5.U.g181.t1; est=BI625805,BI627338; prot=P16425/7227/Putative 115 kDa protein in type-1 retrotransposable element R1DM (Putative 115 kDa protein in type I retrotransposable element R1DM) (ORF 2)
U	9071268	9074623	0.02	+	.	ID=DGIL_AUG30_p5.U.g185.t1; est=EC267125,CO303824,CO338370; prot=AAN87266/7227/ORF1 [Drosophila melanogaster]
U	9078578	9086544	0.16	+	.	ID=DGIL_AUG30_p5.U.g186.t1; prot=P16425/7227/Putative 115 kDa protein in type-1 retrotransposable element R1DM (Putative 115 kDa protein in type I retrotransposable element R1DM) (ORF 2)
U	9096378	9096931	0.85	+	.	ID=DGIL_AUG30_p5.U.g188.t1; prot=NP_001104146/7227/CG40950 CG40950-PA [Drosophila melanogaster]
U	9097698	9099589	0.03	+	.	ID=DGIL_AUG30_p5.U.g189.t1; prot=BAA57030/7240/unnamed protein product [Drosophila simulans]
U	9104108	9105188	0.03	+	.	ID=DGIL_AUG30_p5.U.g190.t1; prot=ABD72267/7264/pol polyprotein [Drosophila buzzatii]
U	9111029	9112327	0.05	-	.	ID=DGIL_AUG30_p5.U.g191.t1; prot=P16423/7227/Retrovirus-related Pol polyprotein from type-2 retrotransposable element R2DM (Retrovirus-related Pol polyprotein from type II retrotransposable element R2DM) [Includes: Protease ;  Reverse transcriptase ;  Endonuclease]
U	9121726	9122969	0.11	+	.	ID=DGIL_AUG30_p5.U.g193.t1; prot=CAD32253/7227/gag-pol polyprotein precursor;  hypothetical protein [Drosophila melanogaster]
U	9135787	9137055	0.02	-	.	ID=DGIL_AUG30_p5.U.g195.t1; prot=BAA57030/7240/unnamed protein product [Drosophila simulans]
U	9137566	9145022	0.01	+	.	ID=DGIL_AUG30_p5.U.g196.t1; prot=CAA65152/7227/orf [Drosophila melanogaster]
U	9146143	9153205	0.01	-	.	ID=DGIL_AUG30_p5.U.g197.t1; prot=NP_001104034/7227/CG41245 CG41245-PA [Drosophila melanogaster]
U	9155256	9158235	0.23	-	.	ID=DGIL_AUG30_p5.U.g199.t1; prot=XP_001056169/10116/PREDICTED: similar to CG40323-PB.3 [Rattus norvegicus]
U	9158366	9168445	0.01	-	.	ID=DGIL_AUG30_p5.U.g200.t1; est=BI564137,BI573731,BI575229; prot=P16425/7227/Putative 115 kDa protein in type-1 retrotransposable element R1DM (Putative 115 kDa protein in type I retrotransposable element R1DM) (ORF 2)
U	9174036	9190670	0.02	+	.	ID=DGIL_AUG30_p5.U.g201.t1; prot=P16425/7227/Putative 115 kDa protein in type-1 retrotransposable element R1DM (Putative 115 kDa protein in type I retrotransposable element R1DM) (ORF 2)
U	9190726	9203585	0.01	-	.	ID=DGIL_AUG30_p5.U.g202.t1; prot=CAA09069/7227/polyprotein [Drosophila melanogaster]
U	9211856	9213008	0.19	+	.	ID=DGIL_AUG30_p5.U.g203.t1; est=BI630965; prot=P16425/7227/Putative 115 kDa protein in type-1 retrotransposable element R1DM (Putative 115 kDa protein in type I retrotransposable element R1DM) (ORF 2)
U	9234636	9238010	0.72	+	.	ID=DGIL_AUG30_p5.U.g206.t1; prot=NP_649263/7227/CG12452 CG12452-PA [Drosophila melanogaster]
U	9240836	9243390	0.15	+	.	ID=DGIL_AUG30_p5.U.g210.t1; prot=CAD32253/7227/gag-pol polyprotein precursor;  hypothetical protein [Drosophila melanogaster]
U	9247586	9249369	0.02	+	.	ID=DGIL_AUG30_p5.U.g212.t1; prot=XP_001056169/10116/PREDICTED: similar to CG40323-PB.3 [Rattus norvegicus]
U	9250719	9251755	0.04	-	.	ID=DGIL_AUG30_p5.U.g213.t1; prot=CAD32253/7227/gag-pol polyprotein precursor;  hypothetical protein [Drosophila melanogaster]
U	9256410	9259215	0.28	-	.	ID=DGIL_AUG30_p5.U.g215.t1; prot=CAB99192/7227/endonuclease/reverse transcriptase [Drosophila melanogaster]
U	9261926	9264831	0.01	+	.	ID=DGIL_AUG30_p5.U.g217.t1; prot=ZP_00373653/307502/indora [Wolbachia endosymbiont of Drosophila ananassae]
U	9265186	9267705	0.05	-	.	ID=DGIL_AUG30_p5.U.g218.t1; prot=P16424/7227/Uncharacterized 50 kDa protein in type I retrotransposable element R1DM (ORF 1)
U	9267806	9273114	0.15	+	.	ID=DGIL_AUG30_p5.U.g219.t1; prot=AAA66527/7227/stellate supressor protein
U	9275779	9285275	0.01	-	.	ID=DGIL_AUG30_p5.U.g220.t1; prot=AAM51136/7227/SD26211p [Drosophila melanogaster]
U	9285435	9290775	0.02	-	.	ID=DGIL_AUG30_p5.U.g221.t1; est=BI569356,BI569453,BI569515,BI569575,BI570078,BI570145,BI575193,BI585143,BI585373,BI589570,BI590014,BI590071,BI590159,BI590461,BI590531,more; prot=P16424/7227/Uncharacterized 50 kDa protein in type I retrotransposable element R1DM (ORF 1)
U	9297396	9304310	0.02	+	.	ID=DGIL_AUG30_p5.U.g222.t1; prot=AAK77263/7227/GH03753p [Drosophila melanogaster]
U	9311905	9312382	0.09	+	.	ID=DGIL_AUG30_p5.U.g223.t1; prot=AAN34653/7227/unknown [Drosophila melanogaster]
U	9313395	9315849	0.06	+	.	ID=DGIL_AUG30_p5.U.g224.t1; prot=P16424/7227/Uncharacterized 50 kDa protein in type I retrotransposable element R1DM (ORF 1)
U	9337786	9339534	0.03	-	.	ID=DGIL_AUG30_p5.U.g227.t1; prot=CAD32253/7227/gag-pol polyprotein precursor;  hypothetical protein [Drosophila melanogaster]
U	9341135	9341749	0.73	+	.	ID=DGIL_AUG30_p5.U.g228.t1; est=BI238032,BI242631,BI365303,BI367256,AA392930; prot=NP_001104392/7227/CG41322 CG41322-PA [Drosophila melanogaster]
U	9341805	9344262	0.28	+	.	ID=DGIL_AUG30_p5.U.g229.t1; est=EC198225; prot=NP_001104113/7227/CG40505 CG40505-PA [Drosophila melanogaster]
U	9348266	9351694	0.02	-	.	ID=DGIL_AUG30_p5.U.g230.t1; prot=XP_001601413/7425/PREDICTED: similar to pol polyprotein [Nasonia vitripennis]
U	9351856	9352484	0.15	-	.	ID=DGIL_AUG30_p5.U.g231.t1; prot=AAC28744/7213/env-like protein [Ceratitis capitata]
U	9364795	9367299	0.09	+	.	ID=DGIL_AUG30_p5.U.g233.t1; prot=NP_001104095/7227/CG40958 CG40958-PA [Drosophila melanogaster]
U	9382485	9383606	0.06	+	.	ID=DGIL_AUG30_p5.U.g236.t1; prot=AAY54653/7227/IP04932p [Drosophila melanogaster]
U	9390067	9392634	0.17	-	.	ID=DGIL_AUG30_p5.U.g238.t1; prot=AAA28508/7227/reverse transcriptase (put.);  putative
U	9402910	9405424	0.01	-	.	ID=DGIL_AUG30_p5.U.g241.t1; prot=ZP_00373813/307502/reverse transcriptase polyprotein [Wolbachia endosymbiont of Drosophila ananassae]
U	9412606	9420794	0.06	-	.	ID=DGIL_AUG30_p5.U.g243.t1; prot=ZP_00373812/307502/putative retrovirus-like env glycoprotein [Wolbachia endosymbiont of Drosophila ananassae]
U	9432736	9434584	0.33	-	.	ID=DGIL_AUG30_p5.U.g247.t1; prot=NP_001015332/7227/CG40096 CG40096-PA [Drosophila melanogaster]
U	9435075	9449739	0.02	+	.	ID=DGIL_AUG30_p5.U.g248.t1; prot=NP_001104125/7227/CG40820 CG40820-PA [Drosophila melanogaster]
U	9449746	9450654	0.36	-	.	ID=DGIL_AUG30_p5.U.g249.t1; prot=ZP_00373813/307502/reverse transcriptase polyprotein [Wolbachia endosymbiont of Drosophila ananassae]
U	9464225	9465723	0.05	+	.	ID=DGIL_AUG30_p5.U.g252.t1; est=BI608504; prot=CAB99192/7227/endonuclease/reverse transcriptase [Drosophila melanogaster]
U	9470855	9472809	0.06	+	.	ID=DGIL_AUG30_p5.U.g254.t1; prot=ZP_00373812/307502/putative retrovirus-like env glycoprotein [Wolbachia endosymbiont of Drosophila ananassae]
U	9510835	9516513	0.08	-	.	ID=DGIL_AUG30_p5.U.g260.t1; prot=S00953/7227/gag protein - fruit fly (Drosophila melanogaster) transposon 1731
U	9517224	9520896	0.1	+	.	ID=DGIL_AUG30_p5.U.g261.t1; prot=P16425/7227/Putative 115 kDa protein in type-1 retrotransposable element R1DM (Putative 115 kDa protein in type I retrotransposable element R1DM) (ORF 2)
U	9523335	9529143	0.02	-	.	ID=DGIL_AUG30_p5.U.g263.t1; prot=CAD32253/7227/gag-pol polyprotein precursor;  hypothetical protein [Drosophila melanogaster]
U	9530064	9531283	0.07	+	.	ID=DGIL_AUG30_p5.U.g264.t1; prot=P20828/7227/Retrovirus-related Gag polyprotein from transposon 297
U	9533450	9535513	0.05	-	.	ID=DGIL_AUG30_p5.U.g266.t1; prot=P16424/7227/Uncharacterized 50 kDa protein in type I retrotransposable element R1DM (ORF 1)
U	9561185	9576423	0.03	-	.	ID=DGIL_AUG30_p5.U.g269.t1; prot=P16424/7227/Uncharacterized 50 kDa protein in type I retrotransposable element R1DM (ORF 1)
U	9595805	9599723	0.03	-	.	ID=DGIL_AUG30_p5.U.g272.t1; prot=ZP_02233167/360099/conserved hypothetical protein [Yersinia pestis biovar Antiqua str. E1979001]
U	9624774	9625253	0.07	-	.	ID=DGIL_AUG30_p5.U.g276.t1; prot=AAL49291/7227/RH02410p [Drosophila melanogaster]
U	9631875	9633443	0.02	-	.	ID=DGIL_AUG30_p5.U.g277.t1; prot=AAK84933/7227/SD02026p [Drosophila melanogaster]
U	9640394	9643396	0.05	+	.	ID=DGIL_AUG30_p5.U.g280.t1; prot=P16425/7227/Putative 115 kDa protein in type-1 retrotransposable element R1DM (Putative 115 kDa protein in type I retrotransposable element R1DM) (ORF 2)
U	9645824	9650517	0.04	+	.	ID=DGIL_AUG30_p5.U.g283.t1; prot=XP_001621485/45351/hypothetical protein NEMVEDRAFT_v1g144708 [Nematostella vectensis]
U	9689709	9701827	0.02	-	.	ID=DGIL_AUG30_p5.U.g287.t1; prot=NP_001104135/7227/CG41533 CG41533-PA [Drosophila melanogaster]
U	9703118	9704211	0.11	+	.	ID=DGIL_AUG30_p5.U.g288.t1; prot=AAQ09229/34739/polyprotein [Antheraea mylitta]
U	9704219	9707657	0.07	-	.	ID=DGIL_AUG30_p5.U.g289.t1; prot=P16425/7227/Putative 115 kDa protein in type-1 retrotransposable element R1DM (Putative 115 kDa protein in type I retrotransposable element R1DM) (ORF 2)
U	9707828	9708997	0.01	+	.	ID=DGIL_AUG30_p5.U.g290.t1; prot=CAB99192/7227/endonuclease/reverse transcriptase [Drosophila melanogaster]
U	9717848	9723452	0.02	+	.	ID=DGIL_AUG30_p5.U.g293.t1; prot=ABD72267/7264/pol polyprotein [Drosophila buzzatii]
U	9723459	9730217	0.12	-	.	ID=DGIL_AUG30_p5.U.g294.t1; prot=CAA33906/7227/stellate protein [Drosophila melanogaster]
U	9734639	9736427	0.16	-	.	ID=DGIL_AUG30_p5.U.g297.t1; prot=ABD72267/7264/pol polyprotein [Drosophila buzzatii]
U	9740439	9745347	0.05	-	.	ID=DGIL_AUG30_p5.U.g298.t1; prot=AAL25501/7227/SD04061p [Drosophila melanogaster]
U	9745518	9745886	0.04	+	.	ID=DGIL_AUG30_p5.U.g299.t1; prot=CAA32198/7227/polyprotein [Drosophila melanogaster]
U	9748339	9752097	0.04	-	.	ID=DGIL_AUG30_p5.U.g301.t1; prot=BAA57030/7240/unnamed protein product [Drosophila simulans]
U	9786529	9788327	0.01	-	.	ID=DGIL_AUG30_p5.U.g304.t1; prot=P16425/7227/Putative 115 kDa protein in type-1 retrotransposable element R1DM (Putative 115 kDa protein in type I retrotransposable element R1DM) (ORF 2)
U	9798276	9798342	0.36	-	.	ID=DGIL_AUG30_p5.U.g305.t1; prot=P16425/7227/Putative 115 kDa protein in type-1 retrotransposable element R1DM (Putative 115 kDa protein in type I retrotransposable element R1DM) (ORF 2)
U	9798276	9800365	0.04	-	.	ID=DGIL_AUG30_p6.U.g4.t1; prot=CAD32253/7227/gag-pol polyprotein precursor;  hypothetical protein [Drosophila melanogaster]
U	9800476	9801922	0.03	+	.	ID=DGIL_AUG30_p6.U.g5.t1; prot=CAD32253/7227/gag-pol polyprotein precursor;  hypothetical protein [Drosophila melanogaster]
U	9842196	9844203	0.23	+	.	ID=DGIL_AUG30_p6.U.g9.t1; prot=AAM51136/7227/SD26211p [Drosophila melanogaster]
U	9847516	9849076	0.06	+	.	ID=DGIL_AUG30_p6.U.g11.t1; prot=XP_969432/7070/PREDICTED: similar to Copia protein (Gag-int-pol protein) [Tribolium castaneum]
U	9850169	9850635	0.53	-	.	ID=DGIL_AUG30_p6.U.g12.t1; prot=NP_001104178/7227/CG40626 CG40626-PA [Drosophila melanogaster]
U	9863779	9865775	0.03	-	.	ID=DGIL_AUG30_p6.U.g15.t1; prot=CAA09069/7227/polyprotein [Drosophila melanogaster]
U	9885247	9888235	0.02	-	.	ID=DGIL_AUG30_p6.U.g17.t1; prot=CAB99192/7227/endonuclease/reverse transcriptase [Drosophila melanogaster]
U	9905286	9909865	0.01	+	.	ID=DGIL_AUG30_p6.U.g21.t1; est=BP552695; prot=NP_572827/7227/CG12717 CG12717-PA [Drosophila melanogaster]
U	9947719	9950222	0.02	-	.	ID=DGIL_AUG30_p6.U.g25.t1; prot=AAM11673/7227/gag protein [Drosophila melanogaster]
U	9950463	9951195	0.13	+	.	ID=DGIL_AUG30_p6.U.g26.t1; prot=NP_001104160/7227/CG40924 CG40924-PA [Drosophila melanogaster]
U	9982183	9987416	0.02	+	.	ID=DGIL_AUG30_p6.U.g29.t1; prot=AAC24972/7245/reverse transcriptase [Drosophila yakuba]
U	9991154	9991692	0.03	-	.	ID=DGIL_AUG30_p6.U.g32.t1; prot=ZP_00373653/307502/indora [Wolbachia endosymbiont of Drosophila ananassae]
4	1302869	1306475	0.01	-	.	ID=DGIL_AUG30_4.g295.t1; est=EC201165,EC224104,EC236191,EC249084,EC249368,EC254589,EC259238,EC259374,EC260347,CO292831,CO292950,CO295954,CO301046,CO305032,CO340071,more; prot=CAG25619/7227/gag protein [Drosophila melanogaster]
4	1313675	1322135	0.01	-	.	ID=DGIL_AUG30_4.g297.t1; est=EC249010,CO322224; prot=CAG25619/7227/gag protein [Drosophila melanogaster]
4	1324896	1329570	0.06	+	.	ID=DGIL_AUG30_4.g298.t1; est=EC063960,EC064882,EC082707,EC082707,EC218182,EC221888,EC222002,EC253574,EC253574,AI114119,AA697502,AA697502,AA439229,AA439229,AI062230,more; prot=AAM29351/7227/GH14618p [Drosophila melanogaster]
4	1330266	1342170	0.01	+	.	ID=DGIL_AUG30_4.g300.t1; est=EC087399,EC088755,EC254528,EC255487,EC255487,EC257804,EC257804,EG974097,BF486966,AI108616,BG632572,BG632572,AI293246,BI227572,ES692833,more; prot=AAM29351/7227/GH14618p [Drosophila melanogaster]
4	1348776	1351813	0.05	+	.	ID=DGIL_AUG30_4.g303.t1; est=AI258367,AI258367,AI258367,BI227572,BI227572,AI107163,AI107163,AI134640,AI134640,AI238808,AI238808,AI260612,AI260612,AI260671,AI260671,more; prot=AAM29351/7227/GH14618p [Drosophila melanogaster]
YHet	24456	27420	0.05	+	.	ID=DGIL_AUG30_YHet.g5.t1; prot=CAB99191/7227/gag-like protein [Drosophila melanogaster]
YHet	27676	29490	0.21	+	.	ID=DGIL_AUG30_YHet.g6.t1; prot=CAB99192/7227/endonuclease/reverse transcriptase [Drosophila melanogaster]
YHet	73236	77920	0.01	+	.	ID=DGIL_AUG30_YHet.g14.t1; prot=AAM51136/7227/SD26211p [Drosophila melanogaster]
YHet	85043	85635	0.11	-	.	ID=DGIL_AUG30_YHet.g17.t1; prot=AAD14609/7250/pol polyprotein [Drosophila immigrans]
YHet	86187	86825	0.06	-	.	ID=DGIL_AUG30_YHet.g19.t1; prot=ABD72267/7264/pol polyprotein [Drosophila buzzatii]
YHet	90062	90675	0.09	-	.	ID=DGIL_AUG30_YHet.g21.t1; prot=AAD14609/7250/pol polyprotein [Drosophila immigrans]
YHet	90747	91145	0.03	-	.	ID=DGIL_AUG30_YHet.g22.t1; prot=ABD72267/7264/pol polyprotein [Drosophila buzzatii]
YHet	91197	92235	0.14	-	.	ID=DGIL_AUG30_YHet.g23.t1; prot=ABD72267/7264/pol polyprotein [Drosophila buzzatii]
YHet	95720	96825	0.03	-	.	ID=DGIL_AUG30_YHet.g25.t1; prot=ZP_00373812/307502/putative retrovirus-like env glycoprotein [Wolbachia endosymbiont of Drosophila ananassae]
YHet	99802	100435	0.05	-	.	ID=DGIL_AUG30_YHet.g26.t1; prot=ZP_00373731/307502/gag protein [Wolbachia endosymbiont of Drosophila ananassae]
YHet	106810	107925	0.16	-	.	ID=DGIL_AUG30_YHet.g29.t1; prot=ABD72267/7264/pol polyprotein [Drosophila buzzatii]
YHet	118454	119125	0.14	-	.	ID=DGIL_AUG30_YHet.g32.t1; prot=AAN87269/7227/ORF [Drosophila melanogaster]
YHet	120017	120655	0.26	-	.	ID=DGIL_AUG30_YHet.g34.t1; prot=AAN87269/7227/ORF [Drosophila melanogaster]
YHet	120707	121065	0.41	-	.	ID=DGIL_AUG30_YHet.g35.t1; prot=AAN87269/7227/ORF [Drosophila melanogaster]
YHet	178246	179506	0.06	+	.	ID=DGIL_AUG30_YHet.g43.t1; prot=AAC28744/7213/env-like protein [Ceratitis capitata]
YHet	190160	191169	0.52	+	.	ID=DGIL_AUG30_YHet.g47.t1; prot=ZP_00373813/307502/reverse transcriptase polyprotein [Wolbachia endosymbiont of Drosophila ananassae]
YHet	265130	266422	0.05	+	.	ID=DGIL_AUG30_YHet.g56.t1; prot=XP_969299/7070/PREDICTED: hypothetical protein, partial [Tribolium castaneum]
YHet	266530	266983	0.19	+	.	ID=DGIL_AUG30_YHet.g57.t1; prot=XP_001338412/7955/PREDICTED: similar to pol polyprotein [Danio rerio]
YHet	267030	267711	0.22	+	.	ID=DGIL_AUG30_YHet.g58.t1; prot=XP_001602646/7425/PREDICTED: similar to ORF, partial [Nasonia vitripennis]
YHet	269050	270004	0.01	+	.	ID=DGIL_AUG30_YHet.g59.t1; prot=BAA19772/7240/unnamed protein product [Drosophila simulans]
YHet	298570	302904	0.04	+	.	ID=DGIL_AUG30_YHet.g63.t1; prot=AAB53050/7227/CREB-binding protein homolog [Drosophila melanogaster]
YHet	308633	310529	0.04	-	.	ID=DGIL_AUG30_YHet.g65.t1; prot=AAN34653/7227/unknown [Drosophila melanogaster]
YHet	315730	319866	0.04	+	.	ID=DGIL_AUG30_YHet.g68.t1; prot=AAS13459/7240/putative reverse transcriptase [Drosophila simulans]
YHet	323990	327194	0.02	+	.	ID=DGIL_AUG30_YHet.g71.t1; prot=AAS13459/7240/putative reverse transcriptase [Drosophila simulans]
YHet	345296	347038	0.22	-	.	ID=DGIL_AUG30_YHet.g78.t1; prot=XP_001601377/7425/PREDICTED: similar to pol polyprotein [Nasonia vitripennis]
2LHet	48666	50718	0.06	+	.	ID=DGIL_AUG30_2LHet.g9.t1; prot=NP_001015295/7227/CG40122 CG40122-PA [Drosophila melanogaster]
2LHet	55780	56275	0.18	-	.	ID=DGIL_AUG30_2LHet.g10.t1; prot=NP_001015295/7227/CG40122 CG40122-PA [Drosophila melanogaster]
2LHet	56347	56765	0.13	-	.	ID=DGIL_AUG30_2LHet.g11.t1; prot=AAN87269/7227/ORF [Drosophila melanogaster]
2LHet	58256	59994	0.07	+	.	ID=DGIL_AUG30_2LHet.g13.t1; est=BI567742,BI576095,BI587951,BI588060,BI589300,BI590420,BI612200,BI613814,BI627794,BI634503; prot=Q8I7Q0/7227/Retrovirus-related Gag polyprotein from transposon opus
2LHet	125806	127703	0.11	+	.	ID=DGIL_AUG30_2LHet.g17.t1; est=CO176821,CO193585,CO194390; prot=AAL57609/7227/reverse transcriptase [Drosophila melanogaster]
2LHet	136356	151613	0.02	+	.	ID=DGIL_AUG30_2LHet.g21.t1; prot=CAC79666/7227/env protein [Drosophila melanogaster]
2LHet	172170	172974	0.06	+	.	ID=DGIL_AUG30_2LHet.g29.t1; prot=AAK77263/7227/GH03753p [Drosophila melanogaster]
2LHet	175956	178229	0.02	-	.	ID=DGIL_AUG30_2LHet.g31.t1; prot=XP_001193133/7668/PREDICTED: similar to zinc finger protein, partial [Strongylocentrotus purpuratus]
2LHet	179302	181709	0.08	-	.	ID=DGIL_AUG30_2LHet.g33.t1; prot=NP_001104339/7227/CG41519 CG41519-PA, isoform A [Drosophila melanogaster]
2LHet	183210	186278	0.19	+	.	ID=DGIL_AUG30_2LHet.g34.t1; prot=CAA32198/7227/polyprotein [Drosophila melanogaster]
2LHet	191500	192852	0.02	+	.	ID=DGIL_AUG30_2LHet.g38.t1; prot=ABD72267/7264/pol polyprotein [Drosophila buzzatii]
2LHet	193700	194977	0.03	+	.	ID=DGIL_AUG30_2LHet.g40.t1; prot=NP_648359/7227/Ilp1 CG14173-PA [Drosophila melanogaster]
2LHet	200050	204834	0.08	+	.	ID=DGIL_AUG30_2LHet.g41.t1; prot=T13250/7227/hypothetical protein - fruit fly (Drosophila melanogaster) transposon BEL
2LHet	204854	208089	0.03	-	.	ID=DGIL_AUG30_2LHet.g42.t1; prot=AAK84933/7227/SD02026p [Drosophila melanogaster]
2LHet	211093	213319	0.04	-	.	ID=DGIL_AUG30_2LHet.g44.t1; est=EC200795,CO323895; prot=AAB47135/7227/Fex [Drosophila melanogaster]
2LHet	250743	253499	0.03	-	.	ID=DGIL_AUG30_2LHet.g48.t1; prot=AAM51136/7227/SD26211p [Drosophila melanogaster]
2LHet	254491	255189	0.13	-	.	ID=DGIL_AUG30_2LHet.g49.t1; prot=S00953/7227/gag protein - fruit fly (Drosophila melanogaster) transposon 1731
2LHet	256140	257214	0.04	+	.	ID=DGIL_AUG30_2LHet.g51.t1; prot=NP_001104458/7227/CG40910 CG40910-PA [Drosophila melanogaster]
2LHet	285106	285529	0.15	-	.	ID=DGIL_AUG30_2LHet.g57.t1; prot=NP_001015317/7227/CG40103 CG40103-PA [Drosophila melanogaster]
2LHet	286252	289159	0.11	-	.	ID=DGIL_AUG30_2LHet.g58.t1; prot=AAN87269/7227/ORF [Drosophila melanogaster]
2LHet	329162	333188	0.02	-	.	ID=DGIL_AUG30_2LHet.g62.t1; est=EC202176; prot=AAL25501/7227/SD04061p [Drosophila melanogaster]
2LHet	337509	339203	0.07	+	.	ID=DGIL_AUG30_2LHet.g63.t1; prot=ZP_00374049/307502/Zinc finger, C3HC4 type (RING finger) domain protein [Wolbachia endosymbiont of Drosophila ananassae]
2LHet	343883	346258	0.07	-	.	ID=DGIL_AUG30_2LHet.g64.t1; prot=AAN87269/7227/ORF [Drosophila melanogaster]
2LHet	346310	346888	0.27	-	.	ID=DGIL_AUG30_2LHet.g65.t1; prot=AAN87269/7227/ORF [Drosophila melanogaster]
2LHet	347087	347788	0.05	-	.	ID=DGIL_AUG30_2LHet.g66.t1; prot=AAN87269/7227/ORF [Drosophila melanogaster]
2LHet	352809	359713	0.03	+	.	ID=DGIL_AUG30_2LHet.g67.t1; prot=Q95SX7/7227/Probable RNA-directed DNA polymerase from transposon BS (Reverse transcriptase)
2LHet	359720	360518	0.38	-	.	ID=DGIL_AUG30_2LHet.g68.t1; prot=AAN87269/7227/ORF [Drosophila melanogaster]
2LHet	361470	363368	0.05	-	.	ID=DGIL_AUG30_2LHet.g71.t1; prot=CAD32253/7227/gag-pol polyprotein precursor;  hypothetical protein [Drosophila melanogaster]
2LHet	364979	366131	0.09	+	.	ID=DGIL_AUG30_2LHet.g72.t1; est=BI591957,BI593244; prot=AAL49291/7227/RH02410p [Drosophila melanogaster]
XHet	28267	28875	0.19	-	.	ID=DGIL_AUG30_XHet.g7.t1; prot=AAM51140/7227/SD27140p [Drosophila melanogaster]
XHet	28957	30025	0.08	-	.	ID=DGIL_AUG30_XHet.g8.t1; prot=XP_001599285/7425/PREDICTED: similar to BEL12_AG transposon polyprotein [Nasonia vitripennis]
XHet	30087	30975	0.03	-	.	ID=DGIL_AUG30_XHet.g9.t1; prot=XP_969299/7070/PREDICTED: hypothetical protein, partial [Tribolium castaneum]
XHet	35616	42541	0.09	+	.	ID=DGIL_AUG30_XHet.g10.t1; est=BI641916,AI531745,AI531745,CO337454; prot=XP_001599014/7425/PREDICTED: similar to gag-pol polyprotein precursor;  hypothetical protein, partial [Nasonia vitripennis]
XHet	86850	89885	0.03	-	.	ID=DGIL_AUG30_XHet.g26.t1; est=CK135964; prot=Q9NBX4/7227/Probable RNA-directed DNA polymerase from transposon X-element (Reverse transcriptase)
XHet	91050	101665	0.03	-	.	ID=DGIL_AUG30_XHet.g27.t1; prot=Q9NBX5/7227/Nucleic-acid-binding protein from transposon X-element
XHet	102824	107545	0.08	-	.	ID=DGIL_AUG30_XHet.g28.t1; prot=Q9NBX4/7227/Probable RNA-directed DNA polymerase from transposon X-element (Reverse transcriptase)
XHet	108709	113435	0.04	-	.	ID=DGIL_AUG30_XHet.g29.t1; prot=Q9NBX4/7227/Probable RNA-directed DNA polymerase from transposon X-element (Reverse transcriptase)
XHet	114594	119315	0.04	-	.	ID=DGIL_AUG30_XHet.g30.t1; prot=Q9NBX4/7227/Probable RNA-directed DNA polymerase from transposon X-element (Reverse transcriptase)
XHet	120479	127475	0.02	-	.	ID=DGIL_AUG30_XHet.g31.t1; prot=Q9NBX4/7227/Probable RNA-directed DNA polymerase from transposon X-element (Reverse transcriptase)
XHet	130566	134201	0.01	+	.	ID=DGIL_AUG30_XHet.g32.t1; prot=S00954/7227/pol polyprotein - fruit fly (Drosophila melanogaster) transposon 1731
XHet	141848	145535	0.01	-	.	ID=DGIL_AUG30_XHet.g35.t1; prot=Q9NBX4/7227/Probable RNA-directed DNA polymerase from transposon X-element (Reverse transcriptase)
XHet	146541	150565	0.04	-	.	ID=DGIL_AUG30_XHet.g36.t1; prot=ABI48303/7227/pol protein [Drosophila melanogaster]
XHet	153496	156179	0.28	+	.	ID=DGIL_AUG30_XHet.g38.t1; prot=ZP_00373812/307502/putative retrovirus-like env glycoprotein [Wolbachia endosymbiont of Drosophila ananassae]
XHet	156407	162555	0.02	-	.	ID=DGIL_AUG30_XHet.g39.t1; prot=NP_608731/7227/CG9641 CG9641-PA, isoform A [Drosophila melanogaster]
XHet	164967	166415	0.08	-	.	ID=DGIL_AUG30_XHet.g40.t1; prot=P21329/7221/RNA-directed DNA polymerase from mobile element jockey (Reverse transcriptase)
XHet	167566	169935	0.02	-	.	ID=DGIL_AUG30_XHet.g41.t1; prot=XP_001602496/7425/PREDICTED: hypothetical protein [Nasonia vitripennis]

Developed at the Genome Informatics Lab of Indiana University Biology Department