parsing sorted dmel-dgri3-dna.gff to gff: dmel-dgri3-algn.gff filters: skipsubseg=6140, joinoverlap=1838, minsizecut=709 Chr cover gaps n_inverts n_segs n_targets prob 2L 19525750 2842034 96 672 257 4.12e-07 2R 17518019 3218700 119 581 167 4.79e-07 3L 20693504 2957692 141 678 181 6.19e-09 3R 25125680 2769206 66 724 303 8.45e-08 4 844146 403728 7 36 13 1.75e-09 X 18553916 3647620 112 686 295 2.51e-07 Total 102261015 15838980 541 3377 1216 2.35e-07 =========================================================================== chr x targets over 1% of 102261015 cover, from n=261 targets dgri_caf051209:scaffold_15110 19918479 19.5% 3L 99.9% dgri_caf051209:scaffold_15245 13779951 13.5% 2R 100.0% dgri_caf051209:scaffold_15252 12412975 12.1% 2L 100.0% dgri_caf051209:scaffold_14906 10871590 10.6% 3R 99.7% dgri_caf051209:scaffold_15203 8476149 8.3% X 99.6% dgri_caf051209:scaffold_14853 6970161 6.8% X 100.0% dgri_caf051209:scaffold_15126 6021176 5.9% 2L 99.7% dgri_caf051209:scaffold_15074 5671661 5.5% 3R 99.9% dgri_caf051209:scaffold_14830 4916829 4.8% 3R 99.5% dgri_caf051209:scaffold_15112 3493126 3.4% 2R 100.0% dgri_caf051209:scaffold_15081 3123192 3.1% X 99.9% dgri_caf051209:scaffold_14624 2878010 2.8% 3R 99.4% ---------------------------------------------------------------------------