parsing sorted dmel-dana3-dna.gff to gff: dmel-dana3-algn.gff filters: skipsubseg=14688, joinoverlap=1976, minsizecut=529 Chr cover gaps n_inverts n_segs n_targets prob 2L 21319284 1054960 27 341 103 9.78e-07 2R 19619256 1137661 62 371 98 6.53e-07 3L 22825032 919427 52 386 86 3.65e-06 3R 27178865 719127 54 444 124 1.61e-06 4 864296 409978 5 76 62 1.08e-06 X 20715971 1494929 58 556 248 9.01e-08 Total 112522704 5736082 258 2174 721 1.30e-06 =========================================================================== chr x targets over 1% of 112522704 cover, from n=190 targets dana_caf051209:scaffold_13340 23221410 20.6% 3R 100.0% dana_caf051209:scaffold_13337 22244252 19.8% 3L 100.0% dana_caf051209:scaffold_13266 18859101 16.8% 2R 100.0% dana_caf051209:scaffold_12916 16121320 14.3% 2L 100.0% dana_caf051209:scaffold_13117 5216648 4.6% X 100.0% dana_caf051209:scaffold_12943 4324263 3.8% 2L 99.3% dana_caf051209:scaffold_13248 3244965 2.9% X 100.0% dana_caf051209:scaffold_12911 3150253 2.8% 3R 96.7% 3L 1.5% dana_caf051209:scaffold_12929 2739106 2.4% X 100.0% dana_caf051209:scaffold_13335 2243360 2.0% X 98.0% 4 2.0% dana_caf051209:scaffold_13417 2219500 2.0% X 94.1% 2R 3.2% dana_caf051209:scaffold_13047 1871333 1.7% X 99.7% dana_caf051209:scaffold_13334 1311468 1.2% X 100.0% ---------------------------------------------------------------------------