Index of /species/data/aphid/predict

 Name                      Last modified       Size  Description

 Parent Directory          18-Jul-2008 15:12      -  
 acyr-augmap4a.aa.gz       13-Jun-2008 11:31   6.3M  
 acyr-augmap4a.gff.gz      13-Jun-2008 11:31   9.9M  
 acyr-evm4.gff.gz          17-Jun-2008 19:56   2.9M  
 acyr-exonr-daph5a.gff3.gz 15-Jun-2008 14:53   1.0M  
 acyr-exonr-nasv5a.gff3.gz 15-Jun-2008 14:53   1.2M  
 acyr-snap4a.aa.gz         12-Jun-2008 21:17  12.4M  
 acyr-snap4a.gff3.gz       12-Jun-2008 21:17   9.6M  
 acyr-snap4a.tr.gz         12-Jun-2008 21:17  18.3M  

NOTES on predictios for pea aphid Acyr1.0 genome
acyr-augmap4a : Augustus + cDNA (PASA) assembly evidence, aug. trained on same cDNA gene set
acyr-snap4a   : SNAP predictions, SNAP HMM trained on same cDNA gene set
acyr-exonr-nasv5a : Exonerate mappings of Nasonia proteins (refined; exonr-4a is unrefined quick/dirty map)
acyr-exonr-daph5a : Exonerate mappings of Daphnia proteins ( " )
acyr-evm3a    : EVidenceModeler combination of above (+ Gnomon and cDNA data)