Choose Species genomes, Feature type and Blast Program:
Species genomes:
Feature type Chromosomes or Scaffolds (NT) genome Genes (NT) genome Proteins (AA) Databank EST (NT) Program blastn: nt->NT blastp: aa->AA blastx: nt->AA tblastn: aa->NT(6) tblastx: nt(6)->NT(6)
Genome data key: C = published Chromosomes (may be partial); S = preliminary assembly Scaffolds; G = genome Genes; P = genome Proteins; E = EST/cDNA; - = no data yet D = Databank sequences (NT) from GenBank/EMBL, RefSeq; Databank proteins (AA) from UniProt, RefSeqp, GenPept;
Enter sequence below in FASTA format Or load it from disk
Expect 0.00001 0.0001 0.01 1 10 100 Matrix PAM30 PAM70 BLOSUM80 BLOSUM62 BLOSUM45 Perform ungapped alignment
Query Genetic Codes (blastx only) Standard (1) Vertebrate Mitochondrial (2) Yeast Mitochondrial (3) Mold Mitochondrial; ... (4) Invertebrate Mitochondrial (5) Ciliate Nuclear; ... (6) Echinoderm Mitochondrial (9) Euplotid Nuclear (10) Bacterial (11) Alternative Yeast Nuclear (12) Ascidian Mitochondrial (13) Flatworm Mitochondrial (14) Blepharisma Macronuclear (15) Frame shift penalty for blastx 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 25 30 50 1000 No OOF
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