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Drosophila Species Genomes BLAST

2008-06: Pea aphid genome added
2007-10: Drosophila species EST added

  

Help with Data and BLAST .. Data set status

Choose Species genomes, Feature type and Blast Program:

Species genomes:
Acyrthosiphon_pisum Pea aphid [S,G,P]
Drosophila melanogaster [C,G,P] Drosophila yakuba [C] CAF1
Drosophila simulans [C] CAF1 Drosophila sechellia [S] CAF1
Drosophila ananassae [S] CAF1 Drosophila erecta [S] CAF1
Drosophila pseudoobscura [C,G,P] CAF1 Drosophila persimilis [S] CAF1
Drosophila mojavensis [S] CAF1 Drosophila willistoni [S] CAF1
Drosophila virilis [S] CAF1 Drosophila grimshawi [S] CAF1

Feature type     Program

Genome data key: C = published Chromosomes (may be partial); S = preliminary assembly Scaffolds; G = genome Genes; P = genome Proteins; E = EST/cDNA; - = no data yet
D = Databank sequences (NT) from GenBank/EMBL, RefSeq; Databank proteins (AA) from UniProt, RefSeqp, GenPept;

Enter sequence below in FASTA format

Or load it from disk

   
The query sequence is filtered for low complexity regions by default.
Filter Low complexity Mask for lookup table only

Expect    Matrix Perform ungapped alignment

Query Genetic Codes (blastx only)
Frame shift penalty for blastx

Other advanced options:     

Collapse Alignments    Alignment view
Descriptions    Alignments Color schema

Software perl wrapper for NCBI WebBlast to display BLAST output with hyperlinks to GBrowse maps: sppblast.cgi
Warning: This is a messy site-specific program, and will need extensive changes to work at other sites. See this page source for the HTML Form fields used by sppblast.cgi.
- Don Gilbert
Developed at the Genome Informatics Lab of Indiana University Biology Department