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Ccr7 Gene Detail
 Symbol
Name
ID
Ccr7
chemokine (C-C motif) receptor 7
MGI:103011


Nomenclature History
Synonyms CD197, Cdw197, Cmkbr7, EBI1, Ebi1h
Genetic Map
Chromosome 11
cytoband D
 
Mapping data( 2)
Sequence Map
Chr11:99005510-99016391 bp, - strand
(From VEGA annotation of NCBI Build 37)
VEGA ContigView | Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; chimpanzee; dog, domestic; pig, domestic; rat    (Mammalian Orthology)
Protein SuperFamily: chemokine receptor
TreeFam: TF330966
Sequences
Representative Sequences Length Strain/Species Flank
genomic OTTMUSG00000006448 VEGA Gene Model | MGI Sequence Detail 10882 C57BL/6J ± Kb
transcript NM_007719 RefSeq | MGI Sequence Detail 1975 C57BL/6
polypeptide P47774 UniProt | EBI | MGI Sequence Detail 378 Not Applicable
For the selected sequences
All sequences(21)
Phenotypes All phenotypic alleles(2) : Targeted, knock-out(1) Targeted, other(1)
Homozygous mice exhibit impairment of the primary immune response. Dendritic cells and B and T cells show impaired migration to the lymph nodes and secondary lymph organs exhibit morphological abnormalities. Lymphocytic infiltrates to the pancreas, lung and stomach are observed in aged mice.
Polymorphisms SNPs within 2kb(29 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
Process chemotaxis, G-protein coupled receptor protein signaling pathway...
Component integral to membrane, membrane...
Function C-C chemokine receptor activity, G-protein coupled receptor activity...
All GO classifications(13)
Expression Literature Summary: (3 records)
Data Summary: Assays (3)    Results (96)    Tissues (52)    Images (4)
Theiler Stages: 26,28
  Assay Type Assays   Results
      RT-PCR 2   41
      In situ reporter (knock in) 1   55
cDNA source data(18)
External Resources: Allen Brain Atlas  GENSAT  GEO 
Other database
links
Ensembl Gene Model ENSMUSG00000037944
DoTS DT.530796
UniGene 2932
DFCI TC1580154
NIA Mouse Gene Index U033382
Entrez Gene 12775
VEGA Gene Model OTTMUSG00000006448
Protein
domains
InterPro ID Description
IPR000276 GPCR, rhodopsin-like
IPR000355 Chemokine receptor
IPR001718 C-C chemokine receptor, type 7
IPR017452 GPCR, rhodopsin-like superfamily
Graphical View of Protein Domain Structure
Molecular
reagents
All nucleic(21) Genomic(1) cDNA(18) Primer pair(2)
References
(Earliest) J:21104 Schweickart VL et al., "Cloning of human and mouse EBI1, a lymphoid-specific G-protein-coupled receptor encoded on human chromosome 17q12-q21.2." Genomics 1994 Oct;23(3):643-50
(Latest) J:142197 Britschgi MR et al., "Dynamic modulation of CCR7 expression and function on naive T lymphocytes in vivo." J Immunol 2008 Dec 1;181(11):7681-8
All references(63)
Other
accession IDs
MGD-MRK-23848

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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Funding Information
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last database update
01/08/2009
MGI_4.13
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The Jackson Laboratory