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Pcsk6 Gene Detail
 Symbol
Name
ID
Pcsk6
proprotein convertase subtilisin/kexin type 6
MGI:102897


Nomenclature History
Synonyms PACE4, SPC4
Genetic Map
Chromosome 7
28.5 cM
Detailed Genetic Map ± 1 cM
 
Mapping data( 5)

Sequence Map
Chr7:73007099-73195220 bp, + strand
(From Ensembl annotation of NCBI Build 37)
Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; chimpanzee; dog, domestic; rat    (Mammalian Orthology)
Comparative Map (Mouse/Human Pcsk6 ± 2 cM)
Protein SuperFamily: proprotein convertase, subtilisin/kexin types
TreeFam: TF314277
Sequences
Representative Sequences Length Strain/Species Flank
genomic ENSMUSG00000030513 Ensembl Gene Model | MGI Sequence Detail 188122 C57BL/6J ± Kb
transcript BC037450 GenBank | EMBL | DDBJ | MGI Sequence Detail 3826 CZECHII
polypeptide Q62030 UniProt | EBI | MGI Sequence Detail 932 Not Applicable
For the selected sequences
All sequences(37)
Phenotypes All phenotypic alleles(1) : Targeted, knock-out(1)
Polymorphisms RFLP(1) SNPs within 2kb(1473 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
Process determination of left/right symmetry, zygotic determination of anterior/posterior axis, embryo...
All GO classifications(3)
Expression Literature Summary: (14 records)
Data Summary: Assays (4)    Results (20)    Tissues (19)    Images (3)
Theiler Stages: 16,17,21,22,23
  Assay Type Assays   Results
      RT-PCR 1   2
      RNA in situ 3   18
cDNA source data(19)
External Resources: Allen Brain Atlas  GEO 
Other database
links
Ensembl Gene Model ENSMUSG00000030513
DoTS DT.101178696, DT.101399918, DT.489888
DFCI TC1598112, TC1601297, TC1603517
NIA Mouse Gene Index U042815
Entrez Gene 18553
Gene Traps 3SD124B09, IST10224C4HMF1, IST10371F12BBF1, IST10815A2HMF1, IST10944H3BBF1    (All 51...)
Protein
domains
InterPro ID Description
IPR000209 Peptidase S8 and S53, subtilisin, kexin, sedolisin
IPR002884 Proprotein convertase, P
IPR006210 EGF
IPR006212 Furin-like repeat
IPR007087 Zinc finger, C2H2-type
IPR010909 PLAC
IPR015500 Peptidase S8, subtilisin-related
Molecular
reagents
All nucleic(23) Genomic(1) cDNA(20) Primer pair(2)
References
(Earliest) J:52522 Steiner DF et al., "The new enzymology of precursor processing endoproteases." J Biol Chem 1992 Nov 25;267(33):23435-8
(Latest) J:140467 Scamuffa N et al., "Regulation of prohepcidin processing and activity by the subtilisin-like proprotein convertases Furin, PC5, PACE4 and PC7." Gut 2008 Nov;57(11):1573-82
All references(32)
Other
accession IDs
MGD-MRK-23731, MGI:2142365

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
01/08/2009
MGI_4.13
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The Jackson Laboratory