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Six3 Gene Detail
 Symbol
Name
ID
Six3
sine oculis-related homeobox 3 homolog (Drosophila)
MGI:102764


Nomenclature History
Genetic Map
Chromosome 17
45.5 cM
Detailed Genetic Map ± 1 cM
 
Mapping data( 2)

Sequence Map
Chr17:86020174-86023502 bp, + strand
(From NCBI annotation of NCBI Build 37)
Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; chimpanzee; dog, domestic; rat    (Mammalian Orthology)
Comparative Map (Mouse/Human Six3 ± 2 cM)
TreeFam: TF315545
Sequences
Representative Sequences Length Strain/Species Flank
genomic 20473 NCBI Gene Model | MGI Sequence Detail 3329 C57BL/6J ± Kb
transcript NM_011381 RefSeq | MGI Sequence Detail 1651 C57BL/6
polypeptide Q62233 UniProt | EBI | MGI Sequence Detail 333 Not Applicable
For the selected sequences
All sequences(20)
Phenotypes All phenotypic alleles(6) : Targeted, knock-out(1) Targeted, other(5)
Mice homozygous for disruptions of this gene die at birth with anterior structures of the head and brain undeveloped.
Associated Human Diseases (1)   Alleles Annotated to Human Diseases (4)  
Polymorphisms RFLP(1) SNPs within 2kb(4 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
Process brain development, camera-type eye development...
Component nucleus
Function DNA binding, protein binding...
All GO classifications(23)
Expression Literature Summary: (121 records)
Data Summary: Assays (25)    Results (163)    Tissues (97)    Images (82)
Theiler Stages: 9,11,12,13,14,15,17,19,20,21,22,24,26,28
  Assay Type Assays   Results
      RNA in situ 24   162
      Northern blot 1   1
cDNA source data(8)
External Resources: GENSAT  GEO 
Other database
links
Ensembl Gene Model ENSMUSG00000038805
DFCI TC1586540, TC1594026, TC1596892, TC1696733
Entrez Gene 20473
Protein
domains
InterPro ID Description
IPR000047 Helix-turn-helix motif, lambda-like repressor
IPR001356 Homeobox
IPR012287 Homeodomain-related
Graphical View of Protein Domain Structure
Molecular
reagents
All nucleic(15) cDNA(10) Other(5)
References
(Earliest) J:23775 Oliver G et al., "Homeobox genes and connective tissue patterning." Development 1995 Mar;121(3):693-705
(Latest) J:142425 Gaston-Massuet C et al., "Genetic interaction between the homeobox transcription factors HESX1 and SIX3 is required for normal pituitary development." Dev Biol 2008 Dec 15;324(2):322-33
All references(128)
Other
accession IDs
MGD-MRK-19669

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
01/08/2009
MGI_4.13
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The Jackson Laboratory