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Hnrnpd Gene Detail
 Symbol
Name
ID
Hnrnpd
heterogeneous nuclear ribonucleoprotein D
MGI:101947


Nomenclature History
Synonyms Auf1, Hnrpd
Genetic Map
Chromosome 5
cytoband E3
 
Mapping data( 2)
Sequence Map
Chr5:100390028-100407957 bp, - strand
(From Ensembl annotation of NCBI Build 37)
Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human    (Mammalian Orthology)
Protein SuperFamily: helix-destabilizing protein
TreeFam: TF314808
Sequences
Representative Sequences Length Strain/Species Flank
genomic ENSMUSG00000000568 Ensembl Gene Model | MGI Sequence Detail 17930 C57BL/6J ± Kb
transcript NM_001077265 RefSeq | MGI Sequence Detail 6810 C57BL/6
polypeptide Q60668 UniProt | EBI | MGI Sequence Detail 355 Not Applicable
For the selected sequences
All sequences(28)
Phenotypes All phenotypic alleles(1) : Targeted, knock-out(1)
Polymorphisms SNPs within 2kb(118 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
Process regulation of mRNA stability, regulation of transcription, DNA-dependent...
Component chromosome, nucleus...
Function DNA binding, nucleic acid binding...
All GO classifications(11)
Expression Literature Summary: (5 records)
Data Summary: Assays (7)    Results (38)    Tissues (30)    Images (3)
Theiler Stages: 7,15,17,21,22,24,28
  Assay Type Assays   Results
      RT-PCR 5   16
      RNA in situ 2   22
cDNA source data(171)
External Resources: Allen Brain Atlas  GENSAT  GEO 
Other database
links
Ensembl Gene Model ENSMUSG00000000568
UniGene 150231
DFCI TC1576901, TC1583004, TC1629881, TC1648243
NIA Mouse Gene Index U041027
Entrez Gene 11991
Gene Traps 3SD008G09, 3SD042H04, 3SD156B03, 5SD027G06, 5SD042H04    (All 45...)
Protein
domains
InterPro ID Description
IPR000504 RNA recognition motif, RNP-1
IPR012677 Nucleotide-binding, alpha-beta plait
Graphical View of Protein Domain Structure
Molecular
reagents
All nucleic(177) cDNA(172) Primer pair(5)
References
(Earliest) J:21628 Ehrenman K et al., "Characterization of cDNAs encoding the murine A+U-rich RNA-binding protein AUF1." Gene 1994 Nov 18;149(2):315-9
(Latest) J:117588 Banihashemi L et al., "Upf1/Upf2 regulation of 3' untranslated region splice variants of AUF1 links nonsense-mediated and A+U-rich element-mediated mRNA decay." Mol Cell Biol 2006 Dec;26(23):8743-54
All references(14)
Other
accession IDs
MGD-MRK-18781

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
01/08/2009
MGI_4.13
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The Jackson Laboratory