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Tfdp1 Gene Detail
 Symbol
Name
ID
Tfdp1
transcription factor Dp 1
MGI:101934


Nomenclature History
Synonyms Dp1, Drtf1
Genetic Map
Chromosome 8
cytoband A1-A3
 
Mapping data( 5)
Sequence Map
Chr8:13339674-13377702 bp, + strand
(From NCBI annotation of NCBI Build 37)
Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; dog, domestic    (Mammalian Orthology)
Protein SuperFamily: transcription factor DP
TreeFam: TF314396
Sequences
Representative Sequences Length Strain/Species Flank
genomic 21781 NCBI Gene Model | MGI Sequence Detail 38029 C57BL/6J ± Kb
transcript NM_009361 RefSeq | MGI Sequence Detail 1700 -
polypeptide Q08639 UniProt | EBI | MGI Sequence Detail 410 Not Applicable
For the selected sequences
All sequences(29)
Phenotypes All phenotypic alleles(1) : Targeted, knock-out(1)
Homozygotes for a targeted null mutation exhibit reduced expansion of the ectoplacental cone and chorion, small yolk sacs, and impaired endoreduplication in trophoblast giant cells. Mutants die by embryonic day 12.5.
Polymorphisms SNPs within 2kb(213 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
Process apoptosis, cell cycle...
Component nucleus, transcription factor complex...
Function DNA binding, protein binding...
All GO classifications(16)
Expression Literature Summary: (12 records)
Data Summary: Assays (8)    Results (79)    Tissues (62)    Images (14)
Theiler Stages: 2,3,4,5,17,18,21,23,24,26,28
  Assay Type Assays   Results
      Western blot 3   20
      RT-PCR 1   15
      RNA in situ 4   44
cDNA source data(10)
External Resources: Allen Brain Atlas  GEO 
Other database
links
Ensembl Gene Model ENSMUSG00000038482
DoTS DT.101239430, DT.101737934, DT.110631907, DT.94156122, DT.94156134, DT.99860040
DFCI TC1574248, TC1605725
NIA Mouse Gene Index U009104, U136210
Entrez Gene 21781
Gene Traps 5SE130E08, AD0723, AM0518, CSE052, CSE124    (All 22...)
Protein
domains
InterPro ID Description
IPR003316 Transcription factor E2F/dimerisation partner (TDP)
IPR011991 Winged helix repressor DNA-binding
IPR014889 Transcription factor DP, C-terminal
IPR015648 Transcription factor DP
IPR016556 Transcription factor DP, subgroup
Graphical View of Protein Domain Structure
Molecular
reagents
All nucleic(20) Genomic(4) cDNA(13) Primer pair(1) Other(2) Antibodies(2)
References
(Earliest) J:17080 Girling R et al., "A new component of the transcription factor DRTF1/E2F [published erratum appears in Nature 1993 Sep 30;365(6445):468]" Nature 1993 Mar 4;362(6415):83-7
(Latest) J:121306 Abba MC et al., "Identification of novel amplification gene targets in mouse and human breast cancer at a syntenic cluster mapping to mouse ch8A1 and human ch13q34." Cancer Res 2007 May 1;67(9):4104-12
All references(24)
Other
accession IDs
MGD-MRK-18766

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
01/08/2009
MGI_4.13
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The Jackson Laboratory