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Tbp Gene Detail
 Symbol
Name
ID
Tbp
TATA box binding protein
MGI:101838


Nomenclature History
Synonyms Gtf2d
Genetic Map
Chromosome 17
8.254 cM
Detailed Genetic Map ± 1 cM
 
Mapping data( 13)

Sequence Map
Chr17:15636852-15654391 bp, + strand
(From VEGA annotation of NCBI Build 37)
VEGA ContigView | Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; dog, domestic; rat; hamster, golden    (Mammalian Orthology)
Comparative Map (Mouse/Human Tbp ± 2 cM)
Protein SuperFamily: human transcription initiation factor IID
TreeFam: TF300102
Sequences
Representative Sequences Length Strain/Species Flank
genomic OTTMUSG00000030550 VEGA Gene Model | MGI Sequence Detail 17540 C57BL/6J ± Kb
transcript NM_013684 RefSeq | MGI Sequence Detail 1842 C57BL/6
polypeptide P29037 UniProt | EBI | MGI Sequence Detail 316 Not Applicable
For the selected sequences
All sequences(28)
Phenotypes All phenotypic alleles(3) : Targeted, knock-out(1) Targeted, other(2)
Mice homozygous for one null allele exhibit embryonic lethality caused by hemorrhaging and clotting in the placenta and surviving embryos die prior to weaning. Mice homozygous for another null allele undergo growth arrest after hatching and apoptosis.
Polymorphisms RFLP(2) SNPs within 2kb(71 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
Process regulation of transcription, DNA-dependent, transcription...
Component female pronucleus, male pronucleus...
Function binding, DNA binding...
All GO classifications(13)
Expression Literature Summary: (23 records)
Data Summary: Assays (15)    Results (110)    Tissues (77)    Images (25)
Theiler Stages: 1,2,3,4,5,13,17,20,21,22,23,24,26,28
  Assay Type Assays   Results
      RT-PCR 10   61
      RNA in situ 5   49
cDNA source data(65)
External Resources: Allen Brain Atlas  GENSAT  GEO 
Other database
links
Ensembl Gene Model ENSMUSG00000014767
DoTS DT.101377423, DT.101377425, DT.91594787, DT.94142848
UniGene 244820
DFCI TC1577485, TC1608407, TC1637361
Entrez Gene 21374
VEGA Gene Model OTTMUSG00000030550
Gene Traps AH0535, IST12344E6BBF1, IST12344E6HMF1, OST452452, RRS626
Protein
domains
InterPro ID Description
IPR000814 TATA-box binding
IPR012295 Beta2-adaptin/TATA-box binding, C-terminal
Graphical View of Protein Domain Structure
Molecular
reagents
All nucleic(84) Genomic(11) cDNA(67) Primer pair(5) Other(1)
References
(Earliest) J:21431 Tamura T et al., "Striking homology of the 'variable' N-terminal as well as the 'conserved core' domains of the mouse and human TATA-factors (TFIID)." Nucleic Acids Res 1991 Jul 25;19(14):3861-5
(Latest) J:138818 Tatarakis A et al., "Dominant and redundant functions of TFIID involved in the regulation of hepatic genes." Mol Cell 2008 Aug 22;31(4):531-43
All references(49)
Other
accession IDs
MGD-MRK-18659, MGD-MRK-24009

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
01/08/2009
MGI_4.13
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The Jackson Laboratory