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OrthoMCL clustering of proteins among arthropod genomes

See this Summary of Arthropod ortholog clusters , and Phylogenetic trees from clusters: Fitch:phenogram, Neighor:tree

Search Arthropod gene clusters


>Limit to genes in these taxa
Mosquitoes Fruitflies Hymenoptera
Other insects Other arthropods
>Limit to genes in these species
      Name                               Last modified       Size  Description

[DIR] Parent Directory 15-Jun-2009 13:44 - [DIR] genetrees/ 12-Jan-2010 15:10 - [TXT] arthropod-orthomcl.txt 10-Jan-2009 14:04 10k Summary of arthropod OrthoMCL results [   ] arthropod-orthomcl-neitree.pdf 12-Aug-2008 17:33 12k Phylo tree of Neighbor of OrthoMCL distances [   ] arthropod-orthomcl-fitchpheno.pdf 12-Aug-2008 18:10 12k Phenogram of Fitch of OrthoMCL distances [TXT] arthropod_ogene3.consensus_def.txt 25-Aug-2008 17:18 1.3M Ar'pod gene group consensus definitions [   ] arthropod_ogenesum4.ugp.txt.gz 24-Aug-2008 16:34 4.3M Ar'pod gene group results, as UGP keyed text [   ] arthropod_ogenesum4.ugp.xml.gz 24-Aug-2008 16:29 4.5M Ar'pod gene group results, as Gene Page XML

  D. Gilbert, OrthoMCL clustering among 13 arthropod proteomes.
  Aug. 2008, gilbertd@indiana.edu

  OrthoMCL: http://www.orthomcl.org/
   Li Li, Christian J. Stoeckert, Jr., and David S. Roos
   OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes. Genome Res. 2003 13: 2178-2189. 
   Feng Chen, Aaron J. Mackey, Jeroen K. Vermunt, and David S. Roos
   Assessing Performance of Orthology Detection Strategies Applied to Eukaryotic Genomes. PLoS ONE 2007 2(4): e383.

Developed at the Genome Informatics Lab of Indiana University Biology Department