Phylogenetically identified new D. melanogaster genes and coding exons

Newly predicted exons in D.mel, outside of and inside of known genes, were selected, and blast-compared to other species. Dmel predicted exons are classified as valid if they show significant similarity and a high synonymous substitution rate (low Ka_Ks) in one or more other species.

About 1800 new exons were found outside of known gene regions, and 300 inside known gene regions. Classification as new gene or new exon of existing genes is not yet done. This is a preliminary rather than exhaustive search of new Dmel genes. Additional new exons can likely be found by including Dmel-sibling gene predictions. Numbers following each location are the bitscore, match identity%, and Ka_Ks ratio.

ID	dmel	dsec	dsim	dyak	dere	dana	dpse	dmoj
texon3042	3R	scaffold_6 357,95%,0.16	chr3R 357,95%,0.16	chr3R 246,89%,0.25	scaffold_4770 285,94%,2.26	scaffold_13340 107,84%,0.07	2 97,82%,0.15	scaffold_6540 48,88%,0.33
texon3055	3R	scaffold_6 236,99%,0	chr3R 236,99%,0	chr3R 161,91%,0.37	scaffold_4770 113,94%,0.5	NA	NA	NA
texon3062	3R	scaffold_1025 101,98%,0	chr3R 178,97%,1	chr3R 105,94%,0	scaffold_4770 149,93%,0.5	scaffold_13340 50,96%,0	2 50,100%,0	NA
texon3069	3R	scaffold_6 145,96%,1	chr3R 153,97%,0.5	chr3R 50,82%,0.66	scaffold_4770 48,88%,0.75	scaffold_13340 44,100%,0	NA	NA
texon3070	3R	scaffold_6 274,89%,0.64	chr3R 339,93%,0.8	chr3R 180,87%,1	scaffold_4770 69,89%,0.5	scaffold_13340 61,97%,0	2 65,100%,0	NA
texon3072	3R	scaffold_6 145,90%,0.37	chr3R 149,91%,0.75	chr3R 87,93%,0.5	scaffold_4770 87,93%,1.49	NA	NA	NA
texon3075	3R	scaffold_6 165,94%,0.5	chr3R 172,95%,0.12	chr3R 63,93%,0.25	scaffold_4770 89,85%,0.66	NA	NA	NA
texon3077	3R	scaffold_6 232,100%,0	chr3R 232,100%,0	chr3R 99,93%,1.49	scaffold_4770 200,97%,0.25	scaffold_13340 48,96%,0	NA	NA
texon3081	3R	scaffold_6 222,98%,0	chr3R 222,98%,0	chr3R 167,92%,0.06	scaffold_4770 190,95%,0.1	scaffold_13340 127,88%,6.54	2 95,85%,0.06	scaffold_6540 56,83%,0.09
texon3087	3R	scaffold_6 153,98%,0	chr3R 153,98%,0	chr3R 137,96%,0	scaffold_4770 145,97%,0	scaffold_13340 73,92%,0	2 121,93%,0	NA
texon3088	3R	scaffold_6 236,97%,0.5	chr3R 236,97%,0.5	chr3R 97,92%,0.75	scaffold_4770 103,88%,0.33	scaffold_13340 73,88%,0.83	2 61,90%,0.75	NA
texon3091	3R	scaffold_6 220,100%,0	chr3R 220,100%,0	chr3R 163,94%,0.5	scaffold_4770 186,95%,2	scaffold_13340 83,86%,0.8	2 85,93%,0.5	scaffold_6540 56,92%,0
texon3097	3R	scaffold_6 192,97%,0	chr3R 200,98%,0	chr3R 83,84%,0.5	scaffold_4770 81,95%,0	scaffold_13337 52,100%,0	2 67,84%,0.42	scaffold_6473 50,100%,0
texon3100	3R	scaffold_6 220,95%,0	chr3R 228,96%,0	chr3R 196,93%,0	scaffold_4770 196,93%,0	scaffold_13340 157,89%,0.13	2 188,92%,0.21	scaffold_6540 135,88%,0.08
texon3102	3R	scaffold_6 220,100%,0	chr3R 220,100%,0	chr3R 212,99%,0	scaffold_4770 212,99%,0	scaffold_13340 188,96%,0	2 188,96%,0	scaffold_6540 165,93%,0
texon3103	3R	scaffold_6 139,100%,0	chr3R 139,100%,0	chr3R 131,98%,0	scaffold_4770 131,98%,0	scaffold_13340 117,97%,0	2 115,95%,0	scaffold_6540 91,91%,0
texon3104	3R	scaffold_6 268,99%,0	chr3R 268,99%,0	chr3R 236,96%,0.12	scaffold_4770 244,97%,0.16	scaffold_13340 137,89%,0.04	2 147,91%,0.05	scaffold_6540 61,81%,0.02
texon3105	3R	scaffold_6 264,100%,0	chr3R 264,100%,0	chr3R 240,100%,0	scaffold_4770 256,99%,0	scaffold_13340 176,91%,0	2 133,87%,0.03	scaffold_6540 137,88%,0
texon3111	3R	scaffold_6 400,93%,0	chr3R 464,97%,0.66	chr3R 151,87%,0.83	scaffold_4770 240,85%,0.85	scaffold_13340 101,96%,0.5	2 54,90%,0.16	scaffold_6540 48,91%,0.25
texon3114	3R	scaffold_6 250,99%,0	chr3R 242,98%,0	chr3R 218,96%,0.33	scaffold_4770 226,96%,0.16	scaffold_13340 107,91%,0.37	2 91,89%,0.25	scaffold_6540 79,100%,0
texon3130	3R	scaffold_6 276,96%,0.75	chr3R 246,93%,0.16	chr3R 137,89%,0.58	scaffold_4770 172,96%,0.25	scaffold_13340 73,90%,0.5	2 91,91%,1	scaffold_6540 71,91%,0.12
texon3136	3R	scaffold_6 250,97%,0.16	chr3R 258,97%,0.25	chr3R 230,95%,0.5	scaffold_4770 266,98%,0.5	scaffold_13340 60,82%,0.78	2 58,96%,0	NA
texon3137	3R	scaffold_6 333,94%,1.5	NA	chr3R 123,98%,0	scaffold_4770 159,95%,0.5	scaffold_13340 93,93%,0.5	2 71,92%,0.5	scaffold_6540 63,95%,0
texon3138	3R	scaffold_6 174,92%,0.62	chr3R_random 190,94%,0.66	chr3R 135,88%,0.9	scaffold_4770 145,94%,0.75	NA	NA	NA
texon3147	3R	scaffold_6 248,93%,0.75	chr3R 234,92%,0.5	chr3R 198,95%,0.33	scaffold_4770 151,90%,0.87	scaffold_13340 50,100%,0	NA	NA
texon3148	3R	scaffold_6 442,96%,0.62	chr3R 474,98%,0.74	chr3R 343,96%,0.3	scaffold_4770 337,94%,1	scaffold_13340 145,92%,0.83	2 54,96%,0	NA
texon3152	3R	scaffold_6 184,95%,0.33	chr3R 208,98%,0.5	chr3R 127,88%,0.5	scaffold_4770 143,90%,0.5	NA	NA	NA
texon3157	3R	scaffold_6 398,99%,0	chr3R 398,99%,0	chr3R 349,97%,0.16	scaffold_4770 375,98%,0	scaffold_13340 170,86%,0.08	2 194,88%,0.16	scaffold_4189 56,96%,0
texon3159	3R	scaffold_6 220,97%,0.25	chr3R 212,96%,0.5	chr3R 149,90%,0.25	scaffold_4770 165,93%,0.08	NA	2 54,86%,0.16	NA
texon3160	3R	scaffold_6 394,93%,0.71	chr3R 387,93%,1	chr3R 212,88%,0.16	scaffold_4770 285,91%,0.19	scaffold_13340 77,85%,0.2	2 46,100%,0	NA
texon3161	3R	scaffold_6 184,98%,0	chr3R 182,97%,0	chr3R 111,88%,1.5	scaffold_4770 159,94%,0.5	NA	NA	NA
texon3162	3R	scaffold_6 194,96%,0.5	chr3R 210,98%,0.5	chr3R 83,86%,1.33	scaffold_4770 119,90%,0.83	NA	NA	NA
texon3170	3R	scaffold_6 484,95%,1.5	chr3R 480,95%,0.7	chr3R 371,90%,1	scaffold_4770 331,95%,0.33	scaffold_13340 206,94%,0.5	2 204,95%,1	scaffold_6540 167,94%,0.33
texon3172	3R	scaffold_6 155,92%,0.5	chr3R 163,93%,0.37	chr3R 97,88%,1.16	scaffold_4770 117,90%,0.5	NA	NA	NA
texon3175	3R	scaffold_6 357,95%,0.62	chr3R 361,95%,0.75	chr3R 287,94%,0.5	scaffold_4770 274,93%,0.6	scaffold_13340 105,94%,0.5	2 52,100%,0	scaffold_6540 56,100%,0
texon3181	3R	scaffold_6 379,97%,0.75	chr3R 402,99%,0.5	chr3R 339,96%,1.25	scaffold_4770 319,96%,1	scaffold_13340 127,95%,0.16	2 58,95%,0	scaffold_1795 48,91%,1
texon3195	3R	scaffold_6 168,95%,0.33	chr3R 147,93%,1	chr3R 115,91%,0.5	scaffold_4770 79,94%,0	NA	NA	NA
texon3197	3R	scaffold_6 367,95%,0.4	chr3R 383,96%,0.66	chr3R 240,88%,0.63	scaffold_4770 272,90%,0.55	NA	NA	NA
texon3199	3R	scaffold_6 196,95%,0	chr3R 196,95%,0	chr3R 145,90%,0.11	scaffold_4770 129,89%,0.05	NA	NA	NA
texon3200	3R	scaffold_6 248,98%,0.5	chr3R 224,96%,0.33	chr3R 206,95%,0.5	scaffold_4770 222,96%,0.33	NA	NA	NA
texon3216	3R	scaffold_6 317,99%,0	chr3R 317,99%,0	chr3R 309,98%,0	scaffold_4770 317,99%,0	scaffold_13340 238,93%,0.11	2 163,89%,0.08	scaffold_6540 155,89%,0.07
texon3224	3R	scaffold_6 139,97%,0	chr3R 145,97%,0	chr3R 129,95%,0.16	scaffold_4770 137,96%,0	scaffold_13340 67,86%,4.5	2 81,87%,0	scaffold_6540 73,87%,0.12
texon3225	3R	scaffold_6 468,96%,0.5	NA	chr3R 394,93%,0.29	scaffold_4770 482,97%,0.16	scaffold_13340 105,86%,0.16	2 105,86%,0.08	scaffold_6540 61,90%,0.12
texon3226	3R	scaffold_6 466,98%,0.5	NA	chr3R 389,93%,0.29	scaffold_4770 476,97%,0.16	scaffold_13340 101,86%,0.16	2 99,86%,0.09	scaffold_6540 61,90%,0.12
texon3234	3R	scaffold_6 307,89%,0.88	chr3R 307,89%,1.06	chr3R 46,91%,0.25	NA	NA	NA	NA
texon3236	3R	scaffold_0 858,96%,0.17	chr3R 858,96%,0.17	chr3R 666,92%,1.67	scaffold_4770 712,92%,0.21	scaffold_13340 73,88%,0.07	2 67,81%,3.84	scaffold_6540 79,82%,0.02
texon3237	3R	scaffold_0 1092,96%,0.2	chr3R 1084,96%,0.28	chr3R 743,89%,0.25	scaffold_4770 799,90%,0.26	scaffold_13340 159,81%,0.12	2 145,81%,0.08	scaffold_6540 125,82%,0.04
texon3238	3R	scaffold_0 476,96%,2.26	chr3R 468,95%,2.51	chr3R 432,92%,3.17	scaffold_4770 385,90%,4.17	scaffold_13340 75,81%,0.07	2 67,86%,0.05	scaffold_6540 67,88%,0.08
texon3239	3R	scaffold_0 163,95%,0.33	chr3R 170,96%,0.5	chr3R 137,94%,0.16	scaffold_4770 141,93%,0.5	NA	2 44,93%,0	NA
texon3250	3R	scaffold_0 182,98%,0.5	chr3R 190,99%,0	chr3R 157,94%,0.25	scaffold_4770 137,93%,0.5	scaffold_13340 56,90%,0.5	2 85,93%,0.5	NA
texon3251	3R	scaffold_0 190,98%,0.5	chr3R 190,98%,0.5	chr3R 137,89%,0.25	scaffold_4770 174,96%,0.5	scaffold_13340 103,93%,0.33	2 54,96%,0	NA
texon3254	3R	scaffold_0 454,97%,1.25	chr3R 462,97%,1	chr3R 357,92%,1	scaffold_4770 446,96%,0.5	scaffold_13340 73,93%,0.25	NA	NA
texon3265	3R	scaffold_0 317,93%,0.75	chr3R 367,95%,0.5	chr3R 311,92%,1.5	scaffold_4770 303,92%,0.31	NA	NA	NA
texon3272	3R	scaffold_0 157,98%,0	chr3R 157,98%,0	chr3R 133,95%,0.5	scaffold_4770 141,96%,1	scaffold_13340 52,89%,0.75	2 61,89%,1	scaffold_6540 52,100%,0
texon3276	3R	scaffold_0 220,100%,0	chr3R 220,100%,0	chr3R 220,100%,0	scaffold_4770 220,100%,0	scaffold_13340 212,99%,0	2 174,95%,0	scaffold_6540 95,86%,0.12
texon3279	3R	scaffold_0 145,95%,0.16	chr3R 153,96%,1	chr3R 73,100%,0	scaffold_4770 67,97%,0	NA	NA	NA
texon3280	3R	scaffold_0 93,100%,0	chr3R 93,100%,0	chr3R 93,100%,0	scaffold_4770 93,100%,0	scaffold_13340 83,100%,0	2 67,95%,0	scaffold_6540 58,96%,0
texon3285	3R	scaffold_0 317,97%,0.12	chr3R 317,97%,0.12	chr3R 256,96%,0.75	scaffold_4770 276,94%,2	NA	NA	NA
texon3289	3R	scaffold_0 389,89%,1.2	chr3R 357,88%,1.4	chr3R 141,81%,0.37	scaffold_4770 113,80%,0.39	NA	NA	NA
texon3290	3R	scaffold_0 389,89%,1.2	chr3R 357,88%,1.4	chr3R 141,81%,0.37	scaffold_4770 113,80%,0.39	NA	NA	NA
texon3292	3R	scaffold_0 440,97%,0	chr3R 440,97%,0	chr3R 408,95%,4.5	scaffold_4770 392,95%,0.04	scaffold_13340 240,89%,0.1	2 218,87%,0.18	scaffold_6540 167,85%,0.25
texon3293	3R	scaffold_0 174,94%,0.25	chr3R 190,95%,0.25	chr3R 133,95%,0.25	scaffold_4770 153,95%,0.16	NA	NA	NA
texon3294	3R	scaffold_0 131,96%,0.25	chr3R 131,96%,0.25	chr3R 107,92%,0.25	scaffold_4770 107,92%,0.5	NA	NA	NA
texon3296	3R	scaffold_0 605,96%,0.66	chr3R 658,98%,0.5	chr3R 511,95%,0.5	scaffold_4770 517,95%,0.75	scaffold_13340 131,97%,0	2 119,94%,0	scaffold_6540 56,88%,0.1
texon3299	3R	scaffold_0 200,91%,0	chr3R 240,96%,1.5	chr3R 155,92%,0.37	scaffold_4770 172,89%,0.66	scaffold_13340 103,94%,1.5	2 56,93%,0	NA
texon3302	3R	scaffold_0 422,97%,0.66	chr3R 438,97%,0.33	chr3R 198,97%,0.25	scaffold_4770 172,94%,1	scaffold_13340 95,98%,0	2 99,96%,0.5	scaffold_6540 93,98%,0
texon3304	3R	scaffold_0 426,97%,0.66	chr3R 551,96%,1.16	chr3R 200,99%,0	scaffold_4770 172,96%,0.25	scaffold_13340 58,96%,0	2 69,95%,0	scaffold_6540 67,95%,0.5
texon3305	3R	scaffold_0 73,92%,1	chr3R 81,94%,0.5	chr3R 107,95%,0.5	scaffold_4770 87,93%,1	NA	4_group1 44,100%,0	scaffold_6473 44,100%,0
texon3306	3R	scaffold_0 238,97%,1.5	chrU 230,96%,0.75	chr3R 186,94%,1	scaffold_4770 184,94%,0.5	scaffold_12916 48,100%,0	2 44,96%,0	scaffold_4734 48,96%,0
texon3311	3R	scaffold_0 266,99%,0	chr3R 266,99%,0	chr3R 103,92%,0.5	scaffold_4770 89,96%,0	NA	NA	NA
texon3312	3R	scaffold_0 355,96%,1.25	chr3R 410,99%,0.5	chr3R 297,94%,0.5	scaffold_4770 285,92%,0.83	scaffold_13340 52,96%,0	NA	NA
texon3316	3R	scaffold_0 240,97%,1	chr3R 165,92%,0.66	chr3R 216,96%,0.5	scaffold_4770 192,93%,0.2	scaffold_13340 79,100%,0	2 75,100%,0	NA
texon3320	3R	scaffold_0 563,97%,0.5	chr3R 579,97%,0.16	chr3R 236,98%,0.5	scaffold_4770 333,88%,1.16	NA	NA	NA
texon3329	3R	scaffold_0 157,96%,0	chr3R 157,96%,0	chr3R 125,92%,0.37	scaffold_4770 109,90%,0.25	scaffold_13340 67,87%,0.5	NA	NA
texon3330	3R	scaffold_0 238,94%,0.5	chr3R 248,95%,0.37	chr3R 133,98%,0	scaffold_4770 135,98%,0	scaffold_13340 101,98%,0	2 99,98%,0	NA
texon3333	3R	scaffold_0 222,97%,0	chr3R 230,98%,0	chr3R 222,97%,0	scaffold_4770 230,98%,0	scaffold_13340 159,91%,0.28	2 159,91%,0.28	scaffold_6540 89,84%,0.27
texon3335	3R	scaffold_0 246,100%,0	chr3R 246,100%,0	chr3R 222,97%,0	scaffold_4770 206,95%,0.33	scaffold_13340 135,88%,0.08	2 151,90%,0.11	scaffold_6540 63,81%,0.08
texon3336	3R	scaffold_0 161,98%,0	chr3R 161,98%,0	chr3R 168,100%,0	scaffold_4770 161,98%,0	scaffold_13340 117,92%,0	2 127,95%,0.16	scaffold_6540 81,88%,0.06
texon3337	3R	scaffold_0 188,96%,0	chr3R 196,97%,0	chr3R 188,96%,0	scaffold_4770 153,92%,3.5	scaffold_13340 85,84%,0.1	2 91,87%,0.18	scaffold_6540 56,82%,0.16
texon3338	3R	scaffold_0 363,97%,0	chr3R 359,97%,0	chr3R 373,98%,0	scaffold_4770 264,91%,0.71	scaffold_13340 242,92%,0.16	2 250,92%,0.09	scaffold_6540 210,88%,0.2
texon3339	3R	scaffold_0 278,98%,0	chr3R 278,98%,0	chr3R 238,94%,1.5	scaffold_4770 270,97%,1.5	scaffold_13340 93,84%,0	2 121,85%,0.02	scaffold_6540 135,87%,0.02
texon3340	3R	scaffold_0 256,97%,0	chr3R 248,96%,0	chr3R 176,90%,0.13	scaffold_4770 204,93%,0.12	scaffold_13340 107,84%,0.07	2 117,85%,0.05	NA
texon3341	3R	scaffold_0 252,99%,0	chr3R 252,99%,0	chr3R 252,99%,0	scaffold_4770 260,100%,0	scaffold_13340 212,95%,0	2 212,95%,0	scaffold_6540 178,92%,0
texon3343	3R	scaffold_0 287,98%,0	chr3R 242,99%,0	chr3R 287,98%,0	scaffold_4770 280,97%,0	scaffold_13340 200,91%,0	2 159,87%,0	scaffold_6540 133,85%,0.02
texon3344	3R	scaffold_0 323,100%,0	chr3R 323,100%,0	chr3R 323,100%,0	scaffold_4770 323,100%,0	scaffold_13340 315,99%,0	2 260,95%,0.07	scaffold_6540 208,92%,0
texon3346	3R	scaffold_0 278,98%,1	chr3R 301,100%,0	chr3R 254,99%,0	scaffold_4770 289,100%,0	scaffold_13340 176,93%,0.83	2 73,95%,0.5	scaffold_6540 67,100%,0
texon3348	3R	scaffold_0 117,97%,0	chr3R 109,95%,0.25	chr3R 69,88%,0.66	scaffold_4770 67,88%,0.66	NA	NA	NA
texon3353	3R	scaffold_0 274,94%,3.5	chr3R 297,96%,2	chr3R 252,93%,2	scaffold_4770 236,92%,0.75	scaffold_13340 131,98%,0	2 91,100%,0	scaffold_6540 115,98%,0
texon3357	3R	scaffold_0 139,97%,0.5	chr3R 147,98%,0	chr3R 111,95%,0.25	scaffold_4770 111,98%,0	NA	XL_group1a 48,96%,0	NA
texon3367	3R	scaffold_0 486,96%,2	chr3R 464,95%,1.25	chr3R 347,91%,0.44	scaffold_4664 363,92%,0.75	scaffold_13335 48,100%,0	2 48,96%,0	scaffold_6500 46,100%,0
texon3373	3R	scaffold_0 2260,97%,0.06	chr3R_random 2157,96%,0.05	chr3R 2127,96%,0.06	scaffold_4770 2157,96%,0.05	scaffold_13340 442,89%,0.11	2 285,87%,0.05	scaffold_6540 387,87%,0.06
texon3383	3R	scaffold_0 224,93%,0.25	chr3R_random 208,92%,0.33	chr3R 200,98%,0.5	scaffold_4770 170,93%,0.66	scaffold_13340 60,84%,0.4	NA	NA
texon3390	3R	scaffold_0 115,96%,0	chr3R 115,96%,0	chr3R 109,94%,0.5	scaffold_4770 117,95%,0.25	scaffold_13340 73,89%,0.37	NA	NA
texon3393	3R	scaffold_0 153,100%,0	chr3R 153,100%,0	chr3R 71,95%,0	scaffold_4770 73,95%,0.5	NA	NA	NA
texon3395	3R	scaffold_0 192,100%,0	chr3R 192,100%,0	chr3R 176,97%,0	scaffold_4770 192,100%,0	scaffold_13340 137,92%,0.08	2 153,94%,0.12	scaffold_6540 121,90%,0.06
texon3396	3R	scaffold_0 226,96%,0.33	chr3R 230,96%,0.5	chr3R 131,94%,0.75	scaffold_4770 131,94%,0.75	scaffold_13340 65,91%,0.5	2 50,96%,0	scaffold_6496 46,96%,0
texon3397	3R	scaffold_0 95,88%,0.5	chr3R 48,93%,0	chr3R 46,100%,0	scaffold_4770 46,100%,0	NA	3 48,96%,0	scaffold_6500 46,100%,0
texon3406	3R	scaffold_0 287,95%,0	chr3R 287,95%,0.08	chr3R 256,93%,0.05	scaffold_4770 264,94%,0.05	scaffold_13340 63,91%,0.16	NA	NA
texon3423	3R	scaffold_0 192,98%,0	chr3R 184,97%,0	chr3R 113,88%,0.75	scaffold_4770 149,93%,0.66	scaffold_13340 52,96%,0	NA	NA
texon3424	3R	scaffold_0 153,97%,0.5	chr3R 147,96%,1	chr3R 129,94%,0.75	scaffold_4770 77,100%,0	NA	NA	NA
texon3428	3R	scaffold_0 414,96%,0.5	chr3R 414,96%,0	chr3R 264,94%,0.83	scaffold_4770 551,94%,0.5	scaffold_13340 153,97%,0.5	2 85,86%,0.83	scaffold_6540 65,89%,0.33
texon3438	3R	scaffold_0 196,100%,0	chr3R 196,100%,0	chr3R 196,100%,0	scaffold_4770 188,98%,0	scaffold_12911 196,100%,0	2 196,100%,0	scaffold_6540 196,100%,0
texon3467	3R	scaffold_0 373,98%,0.5	chr3R 381,98%,0.25	chr3R 174,97%,0.25	scaffold_4770 155,94%,0	scaffold_13340 93,100%,0	2 73,97%,0	NA
texon3483	3R	scaffold_0 246,98%,0	chr3R 232,97%,0	chr3R 184,93%,0.16	scaffold_4770 184,93%,0.5	scaffold_13340 60,92%,0.25	2 83,87%,0.11	NA
texon3484	3R	scaffold_0 232,94%,0.5	chr3R 109,90%,0.5	chr3R 192,91%,0.22	scaffold_4770 163,89%,0.3	scaffold_13340 54,83%,0.9	2 50,83%,0.16	NA
texon3491	3R	scaffold_0 228,95%,0.5	chr3R 228,95%,0.5	chr3R 196,91%,0.62	scaffold_4770 204,92%,0.3	scaffold_13340 56,92%,1	2 65,89%,2.51	NA
texon3497	3R	scaffold_0 163,96%,0.25	chr3R 163,96%,0.25	chr3R 125,91%,0.5	scaffold_4770 121,97%,0.5	scaffold_12913 46,100%,0	2 50,96%,0	scaffold_6377 46,96%,0
texon3499	3R	scaffold_0 99,98%,0	chr3R 99,98%,0	chr3R 91,96%,0.5	scaffold_4770 91,96%,0.5	scaffold_13340 52,92%,0.25	NA	NA
texon3501	3R	scaffold_0 252,90%,0.33	chr3R 163,95%,0.16	chr3R 157,85%,0.16	scaffold_4770 143,86%,0.71	scaffold_13266 54,100%,0	2 54,92%,0.25	scaffold_6680 46,93%,0.5
texon3504	3R	scaffold_0 131,100%,0	chr3R 131,100%,0	chr3R 111,100%,0	scaffold_4770 56,96%,0	NA	NA	scaffold_6500 46,100%,0
texon3511	3R	scaffold_0 139,96%,1	chr3R 147,97%,0.5	chr3R 77,97%,0	scaffold_4770 93,96%,0.5	NA	NA	scaffold_6496 48,100%,0
texon3521	3R	scaffold_0 184,98%,0.5	chr3R 184,98%,0.5	chr3R 133,98%,0	scaffold_4770 157,95%,1.5	NA	NA	NA
texon3522	3R	scaffold_0 184,95%,0.33	chr3R 200,97%,0.25	chr3R 153,92%,0.14	scaffold_4770 172,94%,0.1	scaffold_13340 85,93%,0.16	2 50,93%,0.5	scaffold_6540 79,92%,0.16
texon3532	3R	scaffold_0 190,94%,3.02	chr3R 250,97%,1.5	chr3R 155,91%,0.33	scaffold_4770 119,93%,0.75	scaffold_13340 77,100%,0	2 77,100%,0	scaffold_6308 56,94%,0.5
texon3542	3R	scaffold_0 81,94%,0.25	chr3R 77,95%,0.5	chr3R 85,93%,0.5	scaffold_4770 97,98%,0	scaffold_12911 46,96%,0	2 48,96%,0	scaffold_6308 48,96%,0
texon3546	3R	scaffold_0 236,87%,1.49	chr3R 297,91%,1	chr3R 133,89%,1.5	scaffold_4770 159,89%,1	scaffold_13340 129,93%,0.5	2 60,84%,1	scaffold_6540 77,97%,0
texon3549	3R	scaffold_0 109,86%,0.5	chr3R 113,87%,1	chr3R 91,86%,0.33	scaffold_4770 79,97%,0	NA	NA	NA
texon3556	3R	scaffold_0 103,95%,0	chr3R 111,96%,0	chr3R 111,96%,0	scaffold_4770 119,98%,0	NA	2 50,86%,3.02	NA
texon3563	3R	scaffold_0 109,98%,0	chr3R 119,100%,0	chr3R 111,98%,0	scaffold_4770 77,91%,0.25	NA	NA	NA
texon3565	3R	scaffold_0 365,94%,1	chr3R 373,97%,1	chr3R 321,91%,0.43	scaffold_4770 180,93%,0	scaffold_13340 46,96%,0	NA	NA
texon3568	3R	scaffold_0 161,97%,0.5	chr3R 168,98%,0	chr3R 127,93%,0.16	scaffold_4770 141,97%,0	NA	NA	NA
texon3575	3R	scaffold_0 349,98%,0	chr3R 349,98%,0	chr3R 289,94%,0	scaffold_4770 218,94%,0.25	scaffold_13340 52,90%,0.5	2 69,97%,0	scaffold_6540 61,91%,0.16
texon3588	3R	scaffold_0 559,97%,0.4	chr3R 559,96%,0.5	chr3R 315,92%,0.83	scaffold_4770 323,88%,1.05	scaffold_13340 95,95%,1	2 83,97%,0	scaffold_6308 50,100%,0
texon3595	3R	scaffold_0 103,96%,0	chr3R 103,96%,0	chr3R 105,100%,0	scaffold_4770 89,96%,0	NA	2 46,100%,0	NA
texon3599	3R	scaffold_0 111,96%,0.5	chr3R 111,96%,0.5	chr3R 54,92%,0.25	scaffold_4770 54,92%,0.25	NA	NA	NA
texon3600	3R	scaffold_0 210,93%,0.25	chr3R 218,94%,0.12	chr3R 83,83%,0.23	scaffold_4770 131,88%,0.15	scaffold_13250 61,81%,1.25	NA	NA
texon3616	3R	scaffold_0 97,100%,0	chr3R 97,100%,0	chr3R 97,100%,0	scaffold_4770 97,100%,0	scaffold_13340 60,97%,0	2 63,100%,0	NA
texon3620	3R	scaffold_0 206,91%,0.04	chr3R 206,91%,2.76	chr3R 109,83%,0.88	scaffold_4770 133,86%,0.3	NA	NA	NA
texon3622	3R	scaffold_0 505,94%,0.45	chr3R 482,93%,0.41	chr3R 347,88%,0.58	scaffold_4770 341,88%,0.55	NA	NA	NA
texon3623	3R	scaffold_0 321,94%,0.28	chr3R 337,95%,0.06	chr3R 178,85%,0.1	scaffold_4770 212,88%,0.13	NA	NA	NA
texon3624	3R	scaffold_0 135,92%,1	chr3R 242,90%,0.25	chr3R 168,93%,0.83	scaffold_4770 196,88%,1	scaffold_13334 46,100%,0	XR_group8 50,100%,0	NA
texon3629	3R	scaffold_0 196,90%,0.33	chr3R 182,93%,1.49	chr3R 264,97%,0.5	scaffold_4770 192,91%,0.83	scaffold_13340 87,87%,1.25	2 79,95%,0.5	scaffold_6328 56,92%,0
texon3634	3R	scaffold_12 250,94%,0	NA	chr3R 172,87%,0.37	scaffold_4770 248,95%,0.66	scaffold_12911 63,97%,0	NA	NA
texon3635	3R	scaffold_12 121,100%,0	chr3R 121,100%,0	chr3R 121,100%,0	scaffold_4770 121,100%,0	scaffold_12911 63,93%,0.25	2 44,100%,0	scaffold_6540 52,100%,0
texon3646	3R	scaffold_12 355,95%,1.16	chr3R 339,94%,1	chr3R 236,92%,1.12	scaffold_4770 232,94%,1.25	scaffold_13340 107,90%,1	2 95,89%,0.5	NA
texon3659	3R	scaffold_12 139,100%,0	chr3R 135,97%,0	chr3R 85,94%,0.25	scaffold_4770 107,93%,0.33	scaffold_10633 58,96%,0	2 44,91%,1	scaffold_6308 44,93%,0
texon3680	3R	scaffold_12 161,95%,0.5	chr3R 161,95%,0.5	chr3R 89,88%,1	scaffold_4770 111,93%,0.75	NA	NA	NA
texon3681	3R	scaffold_12 109,96%,0.5	chr3R 117,98%,0	chr3R 101,95%,0.25	scaffold_4770 109,96%,0	NA	2 44,93%,0	scaffold_6540 50,90%,0.16
texon3682	3R	scaffold_12 125,93%,0.75	chr3R 125,93%,0.75	chr3R 71,90%,0.75	scaffold_4770 71,90%,0.75	NA	NA	NA
texon3692	3R	scaffold_12 206,95%,0	chr3R 206,95%,0	chr3R 143,100%,0	scaffold_4770 204,95%,0	scaffold_13340 121,97%,0.5	2 91,94%,1	scaffold_6540 58,88%,1
texon3707	3R	scaffold_12 297,94%,0.75	chr3R 313,95%,0.83	chr3R 234,90%,1	scaffold_4770 143,84%,1.57	NA	NA	NA
texon3709	3R	scaffold_12 297,95%,0.25	chr3R 321,96%,0.1	chr3R 254,93%,0.1	scaffold_4770 262,93%,0.25	NA	NA	NA
texon3711	3R	scaffold_12 333,93%,0.75	chr3R 341,93%,1.25	chr3R 250,91%,1.5	scaffold_4770 198,88%,1.14	scaffold_13340 54,87%,0.08	NA	NA
texon3718	3R	scaffold_12 184,90%,0.25	chr3R 208,92%,0.25	chr3R 165,88%,0.1	scaffold_4770 121,84%,0.32	NA	NA	NA
texon3722	3R	scaffold_12 192,91%,0.31	chr3R 176,89%,0.57	chr3R 129,85%,0.2	scaffold_4770 149,87%,0.23	NA	NA	NA
texon3725	3R	scaffold_12 498,92%,0.8	chr3R 519,92%,0.94	chr3R 254,87%,0.8	scaffold_4770 262,84%,0.97	NA	NA	NA
texon3728	3R	scaffold_12 492,97%,0.25	chr3R 521,98%,1.49	chr3R 450,95%,0.6	scaffold_4770 208,96%,0.5	scaffold_13340 168,95%,0.33	2 157,98%,0	scaffold_6540 115,100%,0
texon3729	3R	scaffold_12 202,98%,0	chr3R 210,99%,0	chr3R 186,96%,0	scaffold_4770 194,97%,0	scaffold_13340 129,91%,0.06	2 95,86%,0.03	scaffold_6540 75,84%,0.07
texon3735	3R	scaffold_12 252,99%,0	chr3R 252,99%,0	chr3R 206,95%,0.33	scaffold_4770 218,96%,0.33	scaffold_13340 81,100%,0	2 87,96%,0.5	scaffold_6540 81,100%,0
texon3740	3R	scaffold_12 222,93%,0.5	chr3R 234,95%,0.66	chr3R_random 89,88%,0.5	scaffold_4770 91,83%,0.66	NA	NA	NA
texon3743	3R	scaffold_12 87,93%,1.49	chr3R 107,89%,0.74	chr2L 58,94%,0	scaffold_4770 99,88%,0.16	scaffold_12916 50,93%,0.5	2 50,93%,0.5	scaffold_6473 52,100%,0
texon3747	3R	scaffold_12 216,96%,0.5	chr3R 246,94%,0.25	chr3R 153,96%,0.25	scaffold_4770 161,95%,0.5	NA	NA	NA
texon3750	3R	scaffold_12 167,98%,0	chr3R 228,99%,0	chr3R_random 133,100%,0	scaffold_4770 125,98%,0	scaffold_13340 81,100%,0	2 61,94%,0	scaffold_6540 58,96%,0
texon3762	3R	scaffold_5 194,90%,0.64	chr3R 204,91%,0.58	chrU 93,85%,0.7	scaffold_4770 81,92%,0.5	NA	NA	NA
texon3768	3R	scaffold_5 125,98%,0	chr3R 117,97%,0	chr3R 107,94%,0.5	scaffold_4770 115,95%,0.25	NA	NA	NA
texon3769	3R	scaffold_5 99,93%,0.5	chr3R 123,97%,0	chr3R 113,94%,0.5	scaffold_4770 99,93%,0.5	scaffold_12911 71,90%,0.33	NA	NA
texon3773	3R	scaffold_5 85,96%,0	chr3R 107,90%,1.75	chr3R 65,100%,0	scaffold_4770 63,97%,0	NA	NA	NA
texon3774	3R	scaffold_5 525,93%,1.16	chr3R 533,94%,0.62	chr3R 311,91%,0.25	scaffold_4770 466,91%,0.5	scaffold_12911 75,100%,0	2 97,89%,1	scaffold_6540 60,92%,0.25
texon3779	3R	scaffold_5 527,95%,0.64	chr3R 513,94%,0.92	chr3R 460,92%,0.35	scaffold_4770 369,89%,1.3	NA	NA	NA
texon3780	3R	scaffold_5 521,95%,0.64	chr3R 507,94%,0.92	chr3R 458,92%,0.35	scaffold_4770 363,88%,1.3	NA	NA	NA
texon3785	3R	scaffold_5 297,93%,0.37	chr3R 254,95%,0.25	chr3R 293,96%,0.5	scaffold_4770 276,94%,0.5	scaffold_12911 97,100%,0	2 117,100%,0	scaffold_6680 48,100%,0
texon3787	3R	scaffold_5 214,100%,0	chr3R 214,100%,0	chr3R 182,96%,0	scaffold_4770 198,98%,0	scaffold_12911 172,95%,0	2 167,94%,0	scaffold_6540 87,85%,0.16
texon3796	3R	scaffold_25 184,97%,0	chr3R 190,97%,1	chr3R_random 159,92%,0.12	scaffold_4770 149,92%,0.33	scaffold_13340 75,95%,0.5	2 48,96%,0	NA
texon3798	3R	scaffold_25 222,98%,0.5	chrU 222,98%,0.5	chr3R 163,91%,0.5	scaffold_4770 139,100%,0	scaffold_13340 89,97%,0	2 56,100%,0	scaffold_6540 50,96%,0
texon3801	3R	scaffold_25 174,93%,0.66	chr3R 174,93%,0.66	chr3R 131,89%,0.5	scaffold_4770 143,90%,0.6	scaffold_13340 58,91%,0.5	2 54,100%,0	NA
texon3804	3R	scaffold_25 119,93%,0.75	chr3R 127,95%,0.5	chr3R 79,94%,0	scaffold_4770 60,90%,0.5	NA	NA	NA
texon3807	3R	scaffold_25 91,93%,0.5	chr3R 99,95%,0.25	NA	scaffold_4770 60,92%,0.25	NA	NA	NA
texon3813	3R	scaffold_25 297,95%,0.5	chr3R 367,99%,0	chr3R 198,96%,0	scaffold_4770 167,97%,0.5	scaffold_13340 89,94%,1	2 105,98%,0	scaffold_6540 101,92%,0.5
texon3814	3R	scaffold_25 125,90%,1	chr3R 111,89%,0	chr3R 105,88%,0	scaffold_4770 83,83%,0.25	scaffold_12916 44,96%,0	2 44,96%,0	scaffold_6473 44,96%,0
texon3817	3R	scaffold_25 369,94%,1	chr3R 377,95%,0.41	chr3R 232,89%,1	scaffold_4770 307,90%,0.58	scaffold_13340 50,84%,0.87	NA	NA
texon3824	3R	scaffold_25 297,95%,0.07	chr3R 297,95%,0.07	chr3R 234,91%,0.07	scaffold_4770 289,95%,4	scaffold_13340 165,89%,0.07	2 107,85%,0.13	NA
texon3827	3R	scaffold_25 238,94%,0.62	chr3R 238,94%,0.4	chr3R 202,91%,0.66	scaffold_4770 119,84%,0.36	NA	NA	NA
texon3830	3R	scaffold_25 220,99%,0	chr3R 220,99%,0	chr3R 220,99%,0	scaffold_4770 204,97%,1	scaffold_13340 149,91%,0	2 125,88%,0.09	scaffold_6540 127,89%,0.1
texon3831	3R	scaffold_25 248,99%,0	chr3R 240,98%,0.5	chr3R 232,97%,0.25	scaffold_4770 240,98%,0.5	scaffold_13340 107,85%,0.83	NA	NA
texon3838	3R	scaffold_27 278,94%,0.41	chr3R 301,95%,0.83	chr3R 250,91%,0.83	scaffold_4770 192,89%,0.5	scaffold_13340 69,88%,0.83	2 61,89%,0.5	NA