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Index of /DroSpeGe/news/genome-summaries/gene-GO-function-association/genes6-dmel12-worm-v9g3

      Name                       Last modified       Size  Description

[DIR] Parent Directory 02-Jan-2007 17:51 - [TXT] index-brief.html 31-Dec-2006 23:09 8k [TXT] index-summary.html 31-Dec-2006 22:27 17k [TXT] genedetail-goid.txt 31-Dec-2006 20:30 107k [TXT] abbreviated-crosstab.txt 31-Dec-2006 20:30 6k [TXT] index-summary-crosstab.txt 31-Dec-2006 20:16 55k

Gene Function GO Associations in Species Genomes

Deviations in gene matches for GO categories by species genomes.

These deviations suggest where species may differ in biological function groups.
Target species genomes: Dro.mel, Dro.sim, Dro.sec, Dro.yak, Dro.ere, Dro.ana, Dro.per, Dro.pse, Dro.wil, Dro.moj, Dro.vir, Dro.gri
Source proteome: Worm [version 9g3]
Gene Function Associations in Species Genomes
Deviations in gene matches for GO categories by species genomes.
Summary of table: genes6-dmel12-worm-v9g3/index-summary-crosstab.txt
Minimum Chi^2 per row: 3

goterm        dmel    dsim    dsec    dyak    dere    dana    dper    dpse    dwil    dmoj    dvir    dgri     Ng  Term and Grouping
GO:0003677    .       ++      .       .       .       .       .       --      .       .       -       .       467  DNA binding, F:binding
GO:0005544    ++++    -       .       .       .       .       .       .       .       .       .       .        10  calcium-dependent phospholipid binding, F:binding
GO:0003964    ----    --      .       +++     -       +++     +       ----    +++     +       ---     .        12  RNA-directed DNA polymerase activity, F:catalytic activity
GO:0003995    .       .       .       -       -       .       -       .       .       .       ++      ++       19  acyl-CoA dehydrogenase activity, F:catalytic activity
GO:0003997    .       .       .       -       -       .       -       -       .       .       +++     +++      11  acyl-CoA oxidase activity, F:catalytic activity
GO:0004175    .       .       .       .       .       -       ++      ++      .       .       .       .        28  endopeptidase activity, F:catalytic activity
GO:0004190    ---     .       +       +++     --      +++     +++     ----    +++     -       ---     --       35  aspartic-type endopeptidase activity, F:catalytic activity
GO:0004298    .       .       -       .       -       -       +       ++      .       .       .       .        29  threonine endopeptidase activity, F:catalytic activity
GO:0008378    .       .       .       .       .       +       +       ++      --      .       -       .         9  galactosyltransferase activity, F:catalytic activity
GO:0008417    .       .       -       .       .       .       +       ++      .       .       .       +         5  fucosyltransferase activity, F:catalytic activity
GO:0008533    .       .       .       .       .       --      .       .       .       +++     .       .        16  astacin activity, F:catalytic activity
GO:0015923    ++      ++      .       +       .       +       .       .       .       --      --      --       13  mannosidase activity, F:catalytic activity
GO:0001584    -       .       .       .       .       .       .       +++     .       .       .       .        83  rhodopsin-like receptor activity, F:signal transducer activity
GO:0004983    .       .       +       .       +       .       --      +       .       .       .       --        9  neuropeptide Y receptor activity, F:signal transducer activity
Over/Under   +2/-2   +2/-1   +0/-0   +2/-0   +0/-1   +2/-1   +2/-1   +5/-3   +2/-1   +1/-1   +2/-3   +2/-3         Relative amount of over- and under-representation in groups (not gene counts)

goterm        dmel    dsim    dsec    dyak    dere    dana    dper    dpse    dwil    dmoj    dvir    dgri     Ng  Term and Grouping
GO:0008150    .       .       ++      .       -       -       ++      -       .       .       -       .        10  biological_process, P:
GO:0007218    .       -       .       .       .       .       .       .       .       .       ++++    .        13  neuropeptide signaling pathway, P:cellular process
GO:0006278    ----    --      .       +++     -       +++     +       ----    +++     +       ---     .        12  RNA-dependent DNA replication, P:physiological process
GO:0006310    -----   .       .       +++++   -----   ++++    +++++   -----   +++++   .       ---     --       50  DNA recombination, P:physiological process
GO:0006334    .       .       +       --      +++     .       +       ----    .       .       .       .        45  nucleosome assembly, P:physiological process
GO:0006486    .       .       .       .       .       .       +       ++      -       .       .       .        18  protein amino acid glycosylation, P:physiological process
GO:0006511    .       .       -       .       .       --      +       ++      .       .       .       .        61  ubiquitin-dependent protein catabolism, P:physiological process
GO:0006635    .       .       .       -       -       .       -       -       .       .       +++     +++      11  fatty acid beta-oxidation, P:physiological process
GO:0006997    .       .       .       .       ++      .       .       --      .       .       .       .        10  nuclear organization and biogenesis, P:physiological process
GO:0007001    .       .       .       --      ++++    .       +       ----    .       .       .       .        36  chromosome organization and biogenesis (sensu Eukaryota), P:physiological process
GO:0040004    .       .       .       -       ++      .       .       .       -       +       .       .        32  cuticular attachment to epithelium (sensu Nematoda), P:physiological process
Over/Under   +0/-2   +0/-1   +1/-0   +2/-2   +4/-1   +2/-1   +2/-0   +2/-5   +2/-0   +0/-0   +2/-2   +1/-1         Relative amount of over- and under-representation in groups (not gene counts)

goterm        dmel    dsim    dsec    dyak    dere    dana    dper    dpse    dwil    dmoj    dvir    dgri     Ng  Term and Grouping
GO:0016021    +       .       .       .       .       -       --      ++      -       .       +       .       494  integral to membrane, C:cell part
GO:0030117    ++      ++      .       .       .       .       .       .       .       .       .       .         6  membrane coat, C:cell part
GO:0005777    .       .       .       -       -       .       -       -       .       .       ++      +++      13  peroxisome, C:organelle
GO:0000786    .       .       +       --      ++++    .       +       -----   .       .       .       .        41  nucleosome, C:protein complex
GO:0005839    .       .       -       .       -       -       +       ++      .       .       .       .        29  proteasome core complex (sensu Eukaryota), C:protein complex
Over/Under   +1/-0   +1/-0   +0/-0   +0/-1   +1/-0   +0/-0   +0/-1   +2/-1   +0/-0   +0/-0   +1/-0   +1/-0         Relative amount of over- and under-representation in groups (not gene counts)

Developed at the Genome Informatics Lab of Indiana University Biology Department