DroSpeGe About Arthropods BLAST BioMart Maps Data News

Index of /DroSpeGe/news/genome-summaries/gene-GO-function-association/genes6-dmel12-mouse-v9g3

      Name                       Last modified       Size  Description

[DIR] Parent Directory 02-Jan-2007 17:51 - [TXT] index-brief.html 31-Dec-2006 23:09 16k [TXT] index-summary.html 31-Dec-2006 22:27 44k [TXT] genedetail-goid.txt 31-Dec-2006 20:30 304k [TXT] abbreviated-crosstab.txt 31-Dec-2006 20:30 12k [TXT] index-summary-crosstab.txt 31-Dec-2006 20:22 147k

Gene Function GO Associations in Species Genomes

Deviations in gene matches for GO categories by species genomes.

These deviations suggest where species may differ in biological function groups.
Target species genomes: Dro.mel, Dro.sim, Dro.sec, Dro.yak, Dro.ere, Dro.ana, Dro.per, Dro.pse, Dro.wil, Dro.moj, Dro.vir, Dro.gri
Source proteome: Mouse [version 9g3]
Gene Function Associations in Species Genomes
Deviations in gene matches for GO categories by species genomes.
Summary of table: genes6-dmel12-mouse-v9g3/index-summary-crosstab.txt
Minimum Chi^2 per row: 3

goterm        dmel    dsim    dsec    dyak    dere    dana    dper    dpse    dwil    dmoj    dvir    dgri     Ng  Term and Grouping
GO:0005515    ++      +++     .       .       .       ---     +       -       --      .       .       +      1546  protein binding, F:binding
GO:0005537    .       .       -       .       .       .       .       +       .       .       +++     --        6  mannose binding, F:binding
GO:0005544    +++     .       .       --      .       .       .       .       .       -       .       .         9  calcium-dependent phospholipid binding, F:binding
GO:0008143    ++      .       ++      .       .       .       .       .       .       .       .       -         7  poly(A) binding, F:binding
GO:0019838    +       ++      +       .       .       --      .       .       .       .       --      .         8  growth factor binding, F:binding
GO:0030151    .       .       .       .       .       +       .       +       -       -       .       ++       12  molybdenum ion binding, F:binding
GO:0050661    ++      +       -       .       .       .       .       .       ++      .       -       .         6  NADP binding, F:binding
GO:0004031    -       .       .       .       .       +       .       .       -       .       .       +++       8  aldehyde oxidase activity, F:catalytic activity
GO:0004182    -       --      .       .       .       .       .       .       .       ++      .       .        32  carboxypeptidase A activity, F:catalytic activity
GO:0004190    .       .       .       .       .       ++      .       .       +       -       -       -        12  aspartic-type endopeptidase activity, F:catalytic activity
GO:0004252    .       .       .       +       .       ++      -       -       +       -       --      .       169  serine-type endopeptidase activity, F:catalytic activity
GO:0008132    --      --      .       +       -       .       .       .       +       ++      ++      .         5  pancreatic elastase activity, F:catalytic activity
GO:0008237    -       --      .       .       .       .       .       +       .       +       +       .       158  metallopeptidase activity, F:catalytic activity
GO:0016491    +++     +++     .       .       .       .       -       -       .       --      .       .       507  oxidoreductase activity, F:catalytic activity
GO:0016709    ++      .       .       +       .       .       -       .       ++      -       -       -        12  oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen, F:catalytic activity
GO:0016789    .       --      -       -       .       ++      .       .       +++     .       +       -        25  carboxylic ester hydrolase activity, F:catalytic activity
GO:0018685    .       ++      .       --      .       .       -       .       .       .       ++      .         5  alkane 1-monooxygenase activity, F:catalytic activity
GO:0050381    .       ++      .       .       -       .       --      .       .       .       .       .        29  unspecific monooxygenase activity, F:catalytic activity
GO:0001584    --      --      .       .       .       .       .       ++      .       .       .       -       102  rhodopsin-like receptor activity, F:signal transducer activity
GO:0004935    ---     ---     ++      +       ++      -       .       .       .       +       .       .        18  adrenoceptor activity, F:signal transducer activity
GO:0004936    --      --      .       .       ++      .       .       .       .       +       .       .         6  alpha-adrenergic receptor activity, F:signal transducer activity
GO:0004952    --      --      .       -       -       +       .       ++      .       .       +       .         6  dopamine receptor activity, F:signal transducer activity
GO:0004984    +       +++     ++      .       -       .       .       --      .       .       .       .         8  olfactory receptor activity, F:signal transducer activity
GO:0004993    --      --      .       +       +       .       .       +       .       .       .       .        15  serotonin receptor activity, F:signal transducer activity
GO:0004995    .       .       .       .       +++     .       -       .       .       .       .       -         4  tachykinin receptor activity, F:signal transducer activity
GO:0017154    +++++   .       .       .       .       .       -       -       .       .       .       .         3  semaphorin receptor activity, F:signal transducer activity
GO:0030020    .       --      --      .       .       .       .       ++      .       .       .       +        21  extracellular matrix structural constituent conferring tensile strength, F:structural molecule activity
GO:0005245    ++      +       -       .       .       .       ++      .       -       .       --      .        12  voltage-gated calcium channel activity, F:transporter activity
GO:0015077    ++      .       .       .       .       --      .       .       .       .       -       +         6  monovalent inorganic cation transporter activity, F:transporter activity
GO:0015114    .       .       --      .       .       .       .       -       +++     .       -       +         5  phosphate transporter activity, F:transporter activity
Over/Under   +9/-6   +6/-10  +3/-2   +0/-2   +3/-0   +3/-3   +1/-1   +3/-1   +4/-1   +2/-1   +3/-3   +2/-1         Relative amount of over- and under-representation in groups (not gene counts)

goterm        dmel    dsim    dsec    dyak    dere    dana    dper    dpse    dwil    dmoj    dvir    dgri     Ng  Term and Grouping
GO:0001504    .       -       -       .       .       --      -       .       +       ++      .       .         5  neurotransmitter uptake, P:cellular process
GO:0007160    .       -       +       +       .       .       .       --      +       .       .       .        22  cell-matrix adhesion, P:cellular process
GO:0007169    .       .       .       .       .       .       -       -       .       .       .       +++      27  transmembrane receptor protein tyrosine kinase signaling pathway, P:cellular process
GO:0007188    .       .       ++      +       .       .       .       .       .       .       --      .        14  G-protein signaling, coupled to cAMP nucleotide second messenger, P:cellular process
GO:0007229    .       .       .       ++      .       -       .       --      .       .       .       ++       27  integrin-mediated signaling pathway, P:cellular process
GO:0016601    .       .       .       ++      .       .       .       -       -       .       .       .         7  Rac protein signal transduction, P:cellular process
GO:0030154    .       +       .       .       .       .       --      -       .       .       ++      .       208  cell differentiation, P:cellular process
GO:0000059    .       ++      .       -       .       +++     .       .       +       -       -       -        15  protein import into nucleus, docking, P:physiological process
GO:0006334    .       .       ++++    .       ++      .       .       ---     -       .       .       .        37  nucleosome assembly, P:physiological process
GO:0006397    ++      ++      .       -       .       .       -       .       .       -       .       .       143  mRNA processing, P:physiological process
GO:0006471    +++     .       .       .       .       -       .       -       .       .       .       .         4  protein amino acid ADP-ribosylation, P:physiological process
GO:0006812    +++     ++      .       .       .       .       .       .       --      .       -       .        95  cation transport, P:physiological process
GO:0006817    .       -       --      .       .       +       .       +       +       .       .       .        26  phosphate transport, P:physiological process
GO:0006874    ++      .       .       -       -       .       .       ++      .       -       .       .        20  calcium ion homeostasis, P:physiological process
GO:0006956    -       .       --      -       .       .       +       .       .       +++     .       +        12  complement activation, P:physiological process
GO:0006958    -       +       -       -       .       .       .       .       .       ++      .       .         9  complement activation, classical pathway, P:physiological process
GO:0007001    +       .       +++     .       +       .       .       ----    .       .       .       .        26  chromosome organization and biogenesis (sensu Eukaryota), P:physiological process
GO:0007009    .       .       .       .       .       .       .       .       -       +       ++      .         8  plasma membrane organization and biogenesis, P:physiological process
GO:0007411    +       .       +       .       .       .       .       --      -       .       ++      .        37  axon guidance, P:physiological process
GO:0009312    .       .       .       .       .       .       ++      ++      --      .       .       --        6  oligosaccharide biosynthesis, P:physiological process
GO:0015672    ++      .       .       .       .       --      .       .       -       .       .       .         7  monovalent inorganic cation transport, P:physiological process
GO:0016926    .       .       -       -       -       .       +       .       -       -       -       +++++     2  protein desumoylation, P:physiological process
GO:0050974    -       .       .       .       .       .       +       +++     .       .       .       -         7  detection of mechanical stimulus during sensory perception, P:physiological process
GO:0016481    .       +       .       .       .       -       .       .       --      .       .       ++       27  negative regulation of transcription, P:regulation of biological process
GO:0042108    .       +       .       -       .       .       .       .       ++      .       .       .         7  positive regulation of cytokine biosynthesis, P:regulation of biological process
GO:0045595    ++      +       +       .       .       --      .       .       -       .       .       -        22  regulation of cell differentiation, P:regulation of biological process
GO:0046324    .       ++      .       ++      --      -       --      +       -       .       .       .         2  regulation of glucose import, P:regulation of biological process
GO:0008344    .       .       ++      .       .       -       .       .       --      .       .       .        13  adult locomotory behavior, P:response to stimulus
Over/Under   +6/-0   +4/-0   +4/-2   +3/-0   +1/-1   +1/-3   +1/-2   +3/-5   +1/-4   +3/-0   +3/-1   +4/-1         Relative amount of over- and under-representation in groups (not gene counts)

goterm        dmel    dsim    dsec    dyak    dere    dana    dper    dpse    dwil    dmoj    dvir    dgri     Ng  Term and Grouping
GO:0005911    -       +       .       .       .       .       .       .       --      .       ++      .         8  intercellular junction, C:cell part
GO:0005581    .       --      --      .       .       .       .       ++      .       +       .       +        21  collagen, C:extracellular matrix part
GO:0005578    --      -       .       .       .       .       .       .       .       ++      .       .       116  extracellular matrix (sensu Metazoa), C:extracellular matrix
GO:0005576    -       .       .       .       .       .       .       -       .       .       +       ++      107  extracellular region, C:extracellular region
GO:0005882    .       .       .       .       +       .       .       -       .       -       .       ++       23  intermediate filament, C:organelle part
GO:0005694    +       .       ++      ---     .       .       .       ---     .       .       .       .        69  chromosome, C:organelle
GO:0000786    .       .       ++++    -       ++      .       .       -----   -       .       .       .        36  nucleosome, C:protein complex
GO:0005643    .       +       .       -       -       ++      .       .       .       -       .       -        32  nuclear pore, C:protein complex
GO:0005667    +       .       .       .       .       .       .       --      .       ++      .       .       211  transcription factor complex, C:protein complex
GO:0005891    ++      +       -       .       .       .       ++      .       -       .       --      .        12  voltage-gated calcium channel complex, C:protein complex
Over/Under   +1/-1   +0/-1   +2/-1   +0/-1   +1/-0   +1/-0   +1/-0   +1/-3   +0/-1   +2/-0   +1/-1   +2/-0         Relative amount of over- and under-representation in groups (not gene counts)

Developed at the Genome Informatics Lab of Indiana University Biology Department