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Index of /DroSpeGe/news/genome-summaries/gene-GO-function-association/genes6-dmel12-fruitfly-v9g3

      Name                       Last modified       Size  Description

[DIR] Parent Directory 02-Jan-2007 17:51 - [TXT] index-brief.html 31-Dec-2006 23:09 15k [TXT] index-summary.html 31-Dec-2006 22:27 28k [TXT] genedetail-goid.txt 31-Dec-2006 20:30 190k [TXT] abbreviated-crosstab.txt 31-Dec-2006 20:30 12k [TXT] index-summary-crosstab.txt 31-Dec-2006 20:10 101k

Gene Function GO Associations in Species Genomes

Deviations in gene matches for GO categories by species genomes.

These deviations suggest where species may differ in biological function groups.
Target species genomes: Dro.mel, Dro.sim, Dro.sec, Dro.yak, Dro.ere, Dro.ana, Dro.per, Dro.pse, Dro.wil, Dro.moj, Dro.vir, Dro.gri
Source proteome: Fruitfly [version 9g3]
Gene Function Associations in Species Genomes
Deviations in gene matches for GO categories by species genomes.
Summary of table: genes6-dmel12-fruitfly-v9g3/index-summary-crosstab.txt
Minimum Chi^2 per row: 3

goterm        dmel    dsim    dsec    dyak    dere    dana    dper    dpse    dwil    dmoj    dvir    dgri     Ng  Term and Grouping
GO:0005554    ++++    +++     +++++   ++++    ++++    .       ----    ---     ----    --      ---     ----    674  molecular_function unknown, F:
GO:0003725    .       +       ++      -       .       -       .       .       .       .       .       .        18  double-stranded RNA binding, F:binding
GO:0005102    -       .       --      -       -       .       +       .       .       ++      +++     +++     233  receptor binding, F:binding
GO:0005506    .       .       -       .       .       +       .       .       ++      .       .       .        38  iron ion binding, F:binding
GO:0005534    .       .       .       +       .       +       .       +       +       -       --      --       12  galactose binding, F:binding
GO:0000163    .       --      -       .       .       -       +       +       +       .       .       .        12  protein phosphatase type 1 activity, F:catalytic activity
GO:0004252    .       ++      .       +       .       .       --      -       +       --      .       .       200  serine-type endopeptidase activity, F:catalytic activity
GO:0004263    .       ++      .       ++      .       .       ---     -       .       --      .       .       211  chymotrypsin activity, F:catalytic activity
GO:0004295    .       +++     .       ++      +       .       ---     -       .       --      -       .       235  trypsin activity, F:catalytic activity
GO:0004497    -       -       .       -       .       +       -       .       ++      .       .       +       105  monooxygenase activity, F:catalytic activity
GO:0004559    .       .       .       .       .       ++      .       .       +++     -       -       --       10  alpha-mannosidase activity, F:catalytic activity
GO:0004656    -       -       .       -       .       .       ++++    ++++    .       .       -       .        23  procollagen-proline 4-dioxygenase activity, F:catalytic activity
GO:0008376    .       -       .       .       .       .       .       .       -       ++      ++      +         6  acetylgalactosaminyltransferase activity, F:catalytic activity
GO:0008378    .       -       -       .       .       .       .       .       .       ++      ++      .         7  galactosyltransferase activity, F:catalytic activity
GO:0008499    .       .       .       .       .       +       ++      ++      -       .       -       -         7  UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity, F:catalytic activity
GO:0016207    -       -       .       .       .       .       .       .       +       +++     ++      .         7  4-coumarate-CoA ligase activity, F:catalytic activity
GO:0016401    -       -       .       -       .       +       -       .       .       .       ++      +++       4  palmitoyl-CoA oxidase activity, F:catalytic activity
GO:0016740    -       .       .       .       .       .       -       .       .       ++      ++      .        99  transferase activity, F:catalytic activity
GO:0016747    -       -       +       -       -       .       .       .       ++++    .       .       .        10  transferase activity, transferring groups other than amino-acyl groups, F:catalytic activity
GO:0016757    -       --      -       -       -       .       +       +       .       ++      .       +        39  transferase activity, transferring glycosyl groups, F:catalytic activity
GO:0016919    -       -       -       .       .       .       +++     +++++   .       .       .       .         3  nardilysin activity, F:catalytic activity
GO:0016984    -       .       -       -       -       .       +       +       .       ++      ++      +         7  ribulose-bisphosphate carboxylase activity, F:catalytic activity
GO:0042708    -       .       -       .       -       .       .       .       ++++    -       .       .        15  elastase activity, F:catalytic activity
GO:0008605    ++      ++      +++     -       -       -       .       .       -       -       -       .         5  protein kinase CK2 regulator activity, F:enzyme regulator activity
GO:0008046    .       .       -       -       .       .       +       -       .       +       .       +++       7  axon guidance receptor activity, F:signal transducer activity
GO:0005316    -       -       -       -       -       .       .       .       ++      ++      .       +        22  high affinity inorganic phosphate:sodium symporter activity, F:transporter activity
GO:0015450    -       --      -       -       .       .       ++      +++     +       .       .       .        30  protein translocase activity, F:transporter activity
Over/Under   +2/-0   +5/-3   +3/-1   +3/-0   +1/-0   +1/-0   +4/-4   +4/-1   +6/-1   +8/-4   +7/-2   +3/-3         Relative amount of over- and under-representation in groups (not gene counts)

goterm        dmel    dsim    dsec    dyak    dere    dana    dper    dpse    dwil    dmoj    dvir    dgri     Ng  Term and Grouping
GO:0016065    ++      ++      +++     ++      +       --      .       .       --      --      --      --        4  , :
Over/Under   +1/-0   +1/-0   +1/-0   +1/-0   +0/-0   +0/-1   +0/-0   +0/-0   +0/-1   +0/-1   +0/-1   +0/-1         Relative amount of over- and under-representation in groups (not gene counts)

goterm        dmel    dsim    dsec    dyak    dere    dana    dper    dpse    dwil    dmoj    dvir    dgri     Ng  Term and Grouping
GO:0000004    +++++   +++     +++++   ++++    ++++    .       ----    ---     ----    --      ---     -----   627  biological_process unknown, P:
GO:0007224    --      .       .       -       -       .       ++      .       +       +       .       .        36  smoothened signaling pathway, P:cellular process
GO:0002009    .       -       .       -       .       .       +++     ++      -       .       .       .        35  morphogenesis of an epithelium, P:development
GO:0000281    .       .       -       .       .       .       .       ++      .       .       .       +++       4  cytokinesis after mitosis, P:physiological process
GO:0006118    -       -       --      -       .       +       .       .       ++      .       +       ++      302  electron transport, P:physiological process
GO:0006334    .       -       ++      --      ++      .       +       --      .       .       .       .        44  nucleosome assembly, P:physiological process
GO:0006464    -       -       --      -       -       .       +++     ++      .       +       .       +       170  protein modification, P:physiological process
GO:0006508    .       .       --      .       .       .       .       .       +       .       .       ++      767  proteolysis, P:physiological process
GO:0006511    -       -       --      .       -       .       +++     +       .       +       +       .        82  ubiquitin-dependent protein catabolism, P:physiological process
GO:0007076    -       .       .       .       .       .       ++      ++      .       .       .       .        18  mitotic chromosome condensation, P:physiological process
GO:0007594    ++      +       +       ++      .       .       .       .       .       -       -       --        5  puparial adhesion, P:physiological process
GO:0008202    .       -       -       .       .       ++      -       .       ++++    .       .       .       108  steroid metabolism, P:physiological process
GO:0008363    -       -       -       ++      --      ++      +       ++      --      -       .       ++        5  larval cuticle biosynthesis (sensu Insecta), P:physiological process
GO:0009247    -       --      -       .       -       .       .       .       .       ++++    ++      ++        6  glycolipid biosynthesis, P:physiological process
GO:0015977    -       .       -       -       -       .       +       +       .       ++      ++      +         7  carbon utilization by fixation of carbon dioxide, P:physiological process
GO:0016567    --      -       -       -       .       .       +++     +       .       +       .       .       141  protein ubiquitination, P:physiological process
GO:0018401    -       .       .       -       .       .       +++     ++      .       .       -       .        19  peptidyl-proline hydroxylation to 4-hydroxy-L-proline, P:physiological process
GO:0030261    -       -       .       -       .       -       ++      ++      +       .       .       .        18  chromosome condensation, P:physiological process
GO:0030422    .       .       .       .       .       -       +++     +++     .       .       .       .         6  RNA interference, production of siRNA, P:physiological process
GO:0030423    .       .       .       .       .       -       ++      ++      .       .       .       .         8  RNA interference, targeting of mRNA for destruction, P:physiological process
GO:0035087    -       .       .       .       .       -       ++      +++     .       -       -       .         6  RNA interference, siRNA loading onto RISC, P:physiological process
GO:0051227    -       .       ++      .       -       -       -       -       .       .       .       ++++      5  mitotic spindle assembly, P:physiological process
GO:0006521    +       ++      ++      ++      +       -       -       .       -       -       --      --       12  regulation of amino acid metabolism, P:regulation of biological process
GO:0030728    .       .       -       .       .       .       .       .       -       ++      ++      .         6  ovulation, P:reproduction
GO:0007618    .       -       -       .       .       .       .       .       .       ++      ++      .         5  mating, P:response to stimulus
GO:0042742    --      --      ---     -       --      .       ++      ++      +++     .       ++      ++       46  defense response to bacterium, P:response to stimulus
GO:0045297    ++      +++     +++     ++      +       .       .       .       ---     --      --      ---       5  post-mating behavior, P:response to stimulus
GO:0046692    .       .       .       -       .       .       ++      +       --      +       ++      -         9  sperm competition, P:response to stimulus
Over/Under   +3/-3   +3/-2   +5/-5   +5/-1   +2/-2   +2/-0   +13/-1  +11/-2  +3/-4   +4/-2   +6/-3   +7/-4         Relative amount of over- and under-representation in groups (not gene counts)

goterm        dmel    dsim    dsec    dyak    dere    dana    dper    dpse    dwil    dmoj    dvir    dgri     Ng  Term and Grouping
GO:0008372    ++++    +++     ++++    ++++    +++     .       ----    ---     ---     --      ---     ----    744  cellular_component unknown, C:
GO:0005792    .       -       .       -       .       ++      -       .       +++     .       +       .        91  microsome, C:cell part
GO:0009573    -       .       -       -       -       .       +       +       .       ++      ++      +         7  ribulose bisphosphate carboxylase complex (sensu Magnoliophyta), C:cell part
GO:0018994    .       -       -       -       .       .       +++     .       ++      .       .       .         6  polar granule, C:organelle
GO:0000164    --      -       -       -       .       .       .       +       +       ++      .       .         8  protein phosphatase type 1 complex, C:protein complex
GO:0000786    .       -       .       --      +       .       .       ----    .       +       +       .        35  nucleosome, C:protein complex
GO:0005742    -       -       -       .       -       .       +++     +++     +       .       .       -        11  mitochondrial outer membrane translocase complex, C:protein complex
GO:0005956    ++      ++      +++     -       -       -       .       .       -       .       .       .         6  protein kinase CK2 complex, C:protein complex
GO:0016222    -       -       .       -       .       .       +++     ++++    .       .       -       .        22  procollagen-proline, 2-oxoglutarate-4-dioxygenase complex, C:protein complex
GO:0016442    .       .       .       .       .       -       ++      ++      .       .       .       .         8  RNA-induced silencing complex, C:protein complex
GO:0019005    --      --      -       -       -       +       +       +       ++      .       .       .        15  SCF ubiquitin ligase complex, C:protein complex
Over/Under   +2/-2   +2/-1   +2/-0   +1/-1   +1/-0   +1/-0   +4/-1   +3/-2   +3/-1   +2/-1   +1/-1   +0/-1         Relative amount of over- and under-representation in groups (not gene counts)

Developed at the Genome Informatics Lab of Indiana University Biology Department