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Index of /DroSpeGe/news/genome-summaries/gene-GO-function-association/genes6-cele5-worm-v9g3

      Name                       Last modified       Size  Description

[DIR] Parent Directory 02-Jan-2007 17:51 - [TXT] index-brief.html 31-Dec-2006 23:09 27k [TXT] index-summary.html 31-Dec-2006 22:27 70k [TXT] genedetail-goid.txt 31-Dec-2006 20:30 351k [TXT] abbreviated-crosstab.txt 31-Dec-2006 20:30 20k [TXT] index-summary-crosstab.txt 31-Dec-2006 20:19 116k

Gene Function GO Associations in Species Genomes

Deviations in gene matches for GO categories by species genomes.

These deviations suggest where species may differ in biological function groups.
Target species genomes: C.elegans, Daphnia_pulex, Dro.mel, Dro.pse, Dro.vir
Source proteome: Worm [version 9g3]
Gene Function Associations in Species Genomes
Deviations in gene matches for GO categories by species genomes.
Summary of table: genes6-cele5-worm-v9g3/index-summary-crosstab.txt
Minimum Chi^2 per row: 5

goterm        cele    dpul    dmel    dpse    dvir     Ng  Term and Grouping
GO:0003674    ++++    .       -       -       -         1  molecular_function, F:
GO:0005554    +++++   ----    --      -       ---     175  molecular_function unknown, F:
GO:0000166    -----   .       +++     ++      ++      268  nucleotide binding, F:binding
GO:0003676    ---     +       .       +       ++      576  nucleic acid binding, F:binding
GO:0003677    +       +++     -       ---     .       461  DNA binding, F:binding
GO:0003700    +++++   -----   ----    ----    ---     270  transcription factor activity, F:binding
GO:0003723    --      +++     .       .       .       113  RNA binding, F:binding
GO:0003779    ---     ++      .       .       .        38  actin binding, F:binding
GO:0005179    +++++   --      ---     --      ---      10  hormone activity, F:binding
GO:0005506    ----    +++++   .       .       .       131  iron ion binding, F:binding
GO:0005509    ---     .       ++      .       ++      205  calcium ion binding, F:binding
GO:0005524    ---     +++     .       .       .       770  ATP binding, F:binding
GO:0005529    +++++   -----   -----   -----   -----    98  sugar binding, F:binding
GO:0005544    --      .       +++     .       .        10  calcium-dependent phospholipid binding, F:binding
GO:0008061    ----    .       .       ++      +        29  chitin binding, F:binding
GO:0008199    .       +++     .       .       -         4  ferric iron binding, F:binding
GO:0008270    ----    .       .       ++      +       571  zinc ion binding, F:binding
GO:0008289    ++++    .       --      .       --       19  lipid binding, F:binding
GO:0020037    .       +++     .       .       -       106  heme binding, F:binding
GO:0050660    ---     ++      .       .       .        17  FAD binding, F:binding
GO:0003964    .       +++++   ---     --      --        7  RNA-directed DNA polymerase activity, F:catalytic activity
GO:0003993    +++     --      .       .       .        12  acid phosphatase activity, F:catalytic activity
GO:0004089    ----    +++     .       +       .        18  carbonate dehydratase activity, F:catalytic activity
GO:0004175    --      .       .       +++     .        26  endopeptidase activity, F:catalytic activity
GO:0004179    ---     +       +       .       .        23  membrane alanyl aminopeptidase activity, F:catalytic activity
GO:0004180    ---     +++     .       .       .        14  carboxypeptidase activity, F:catalytic activity
GO:0004182    ---     ++++    .       .       .        34  carboxypeptidase A activity, F:catalytic activity
GO:0004190    -       +++++   --      --      -        25  aspartic-type endopeptidase activity, F:catalytic activity
GO:0004197    .       ++++    -       -       .        52  cysteine-type endopeptidase activity, F:catalytic activity
GO:0004198    +++     .       .       --      --        5  calpain activity, F:catalytic activity
GO:0004263    -----   .       +       ++      ++       22  chymotrypsin activity, F:catalytic activity
GO:0004295    ----    .       .       +       ++       25  trypsin activity, F:catalytic activity
GO:0004298    ----    --      +       +++     ++       23  threonine endopeptidase activity, F:catalytic activity
GO:0004386    --      +++     .       .       .        90  helicase activity, F:catalytic activity
GO:0004435    .       +++     -       --      -         7  phosphoinositide phospholipase C activity, F:catalytic activity
GO:0004437    ---     -       +       ++      +        19  inositol or phosphatidylinositol phosphatase activity, F:catalytic activity
GO:0004497    ---     +++++   .       .       -       103  monooxygenase activity, F:catalytic activity
GO:0004556    ---     -       +       +++     +        11  alpha-amylase activity, F:catalytic activity
GO:0004568    +++     .       -       .       --       22  chitinase activity, F:catalytic activity
GO:0004629    .       ++++    -       -       -         6  phospholipase C activity, F:catalytic activity
GO:0004672    ++++    .       --      --      --      284  protein kinase activity, F:catalytic activity
GO:0004713    +++     +       --      -       -        72  protein-tyrosine kinase activity, F:catalytic activity
GO:0004714    +++++   ---     ----    ----    ----     19  transmembrane receptor protein tyrosine kinase activity, F:catalytic activity
GO:0004721    +++++   ---     --      -       -        51  phosphoprotein phosphatase activity, F:catalytic activity
GO:0004725    +++++   ----    ---     ---     --       42  protein tyrosine phosphatase activity, F:catalytic activity
GO:0004768    ---     .       +       ++      .         8  stearoyl-CoA 9-desaturase activity, F:catalytic activity
GO:0004806    +++++   --      --      ---     ---       7  triacylglycerol lipase activity, F:catalytic activity
GO:0004812    ---     ++      .       .       .        51  aminoacyl-tRNA ligase activity, F:catalytic activity
GO:0005006    +++++   ---     ----    ----    ----     17  epidermal growth factor receptor activity, F:catalytic activity
GO:0008107    +++++   -       --      --      --        3  galactoside 2-alpha-L-fucosyltransferase activity, F:catalytic activity
GO:0008235    -       ++++    .       -       .        11  metalloexopeptidase activity, F:catalytic activity
GO:0008237    --      +++     .       .       .       110  metallopeptidase activity, F:catalytic activity
GO:0008375    ++++    --      -       -       -         9  acetylglucosaminyltransferase activity, F:catalytic activity
GO:0008378    .       +++++   --      .       ---      17  galactosyltransferase activity, F:catalytic activity
GO:0008417    --      +++++   --      .       -         9  fucosyltransferase activity, F:catalytic activity
GO:0008483    --      +++++   -       -       .        20  transaminase activity, F:catalytic activity
GO:0008484    ---     .       ++      +       .         9  sulfuric ester hydrolase activity, F:catalytic activity
GO:0008533    .       +++++   --      --      --       27  astacin activity, F:catalytic activity
GO:0008642    --      --      .       +++     +        30  small protein activating enzyme activity [alt], F:catalytic activity
GO:0016291    +++++   .       -       --      --        2  acyl-CoA thioesterase activity, F:catalytic activity
GO:0016298    +++++   -       --      --      --        4  lipase activity, F:catalytic activity
GO:0016491    ---     +++++   .       .       .       282  oxidoreductase activity, F:catalytic activity
GO:0016614    ---     .       ++      .       .        11  oxidoreductase activity, acting on CH-OH group of donors, F:catalytic activity
GO:0016706    ---     .       .       +++     .        19  oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, F:catalytic activity
GO:0016747    +++     ++      --      --      --       41  transferase activity, transferring groups other than amino-acyl groups, F:catalytic activity
GO:0016757    -       +++++   .       -       -         5  transferase activity, transferring glycosyl groups, F:catalytic activity
GO:0016758    +++     ----    .       .       -        49  transferase activity, transferring hexosyl groups, F:catalytic activity
GO:0016789    --      ++++    +       -       .        22  carboxylic ester hydrolase activity, F:catalytic activity
GO:0016791    --      ---     ++      ++      .         7  phosphoric monoester hydrolase activity, F:catalytic activity
GO:0016847    -       ++++    .       -       -         6  1-aminocyclopropane-1-carboxylate synthase activity, F:catalytic activity
GO:0016874    --      +++++   -       .       -        19  ligase activity, F:catalytic activity
GO:0016887    ----    +       ++      .       +       104  ATPase activity, F:catalytic activity
GO:0017111    -----   .       ++      +       +       143  nucleoside-triphosphatase activity, F:catalytic activity
GO:0042626    ---     .       ++      .       +        56  ATPase activity, coupled to transmembrane movement of substances, F:catalytic activity
GO:0004867    .       -----   .       +       ++       54  serine-type endopeptidase inhibitor activity, F:enzyme regulator activity
GO:0003774    ---     -       +       +       ++       33  motor activity, F:motor activity
GO:0003777    ---     .       .       ++      +        35  microtubule motor activity, F:motor activity
GO:0001584    +++++   -----   -----   ----    -----   149  rhodopsin-like receptor activity, F:signal transducer activity
GO:0003707    +++++   -----   -----   -----   -----    78  steroid hormone receptor activity, F:signal transducer activity
GO:0004872    ----    --      +       +       +++      33  receptor activity, F:signal transducer activity
GO:0004879    +++++   ---     ----    ----    ----     40  ligand-dependent nuclear receptor activity, F:signal transducer activity
GO:0004888    +++++   -----   -----   ----    ----     39  transmembrane receptor activity, F:signal transducer activity
GO:0004890    +++     .       --      --      -        19  GABA-A receptor activity, F:signal transducer activity
GO:0004930    +++++   -----   -----   -----   -----   151  G-protein coupled receptor activity, F:signal transducer activity
GO:0004970    ---     -       .       ++      +++      20  ionotropic glutamate receptor activity, F:signal transducer activity
GO:0008158    +++++   .       -       --      --       10  hedgehog receptor activity, F:signal transducer activity
GO:0030594    +++     ++      -       --      --       41  neurotransmitter receptor activity, F:signal transducer activity
GO:0003735    ---     .       ++      .       .       129  structural constituent of ribosome, F:structural molecule activity
GO:0005198    +++++   --      -       -       -       108  structural molecule activity, F:structural molecule activity
GO:0042302    +++++   .       -----   -----   -----    53  structural constituent of cuticle, F:structural molecule activity
GO:0005215    ----    -       .       ++      ++++    281  transporter activity, F:transporter activity
GO:0005216    ---     ++      +       .       .        88  ion channel activity, F:transporter activity
GO:0005230    +++++   .       --      ---     ---      48  extracellular ligand-gated ion channel activity, F:transporter activity
GO:0005234    ---     -       .       ++      +++      20  glutamate-gated ion channel activity, F:transporter activity
GO:0005262    --      +++     .       .       .         9  calcium channel activity, F:transporter activity
GO:0005272    +++     ----    .       .       .        15  sodium channel activity, F:transporter activity
Over/Under   +34/-48 +34/-24 +10/-28 +16/-28 +12/-28       Relative amount of over- and under-representation in groups (not gene counts)

goterm        cele    dpul    dmel    dpse    dvir     Ng  Term and Grouping
GO:0007154    ++++    .       --      -       -        10  cell communication, P:cellular process
GO:0007155    ----    -       ++      +       ++       39  cell adhesion, P:cellular process
GO:0007186    +++++   -----   -----   ----    -----   169  G-protein coupled receptor protein signaling pathway, P:cellular process
GO:0007188    ---     --      ++      ++      +        10  G-protein signaling, coupled to cAMP nucleotide second messenger, P:cellular process
GO:0007218    .       ---     .       .       +++      14  neuropeptide signaling pathway, P:cellular process
GO:0007223    ---     +++     .       .       .        10  frizzled-2 signaling pathway, P:cellular process
GO:0007308    ----    ++      .       .       +        26  oocyte construction, P:cellular process
GO:0002009    ----    -       +++     ++      +       159  morphogenesis of an epithelium, P:development
GO:0002119    ---     .       .       ++      .        40  larval development (sensu Nematoda), P:development
GO:0008340    ----    +       ++      +       .        85  determination of adult life span, P:development
GO:0009790    ----    .       .       ++      +        73  embryonic development, P:development
GO:0009792    -----   .       ++++    ++++    ++++   1230  embryonic development (sensu Metazoa), P:development
GO:0009952    ---     .       .       .       ++       12  anterior/posterior pattern formation, P:development
GO:0040032    ---     .       ++      .       +       186  post-embryonic body morphogenesis, P:development
GO:0040035    -----   .       +++     +++     ++      335  hermaphrodite genitalia development, P:development
GO:0040007    -----   .       ++++    +++     ++++    620  growth, P:growth
GO:0006030    -----   .       +       ++      ++       26  chitin metabolism, P:physiological process
GO:0006032    +++     .       -       .       --       22  chitin catabolism, P:physiological process
GO:0006100    ---     -       .       ++      ++        9  tricarboxylic acid cycle intermediate metabolism, P:physiological process
GO:0006118    ---     +++++   .       .       -       306  electron transport, P:physiological process
GO:0006278    .       +++++   ---     --      --        7  RNA-dependent DNA replication, P:physiological process
GO:0006310    ---     +++++   -----   -----   +        29  DNA recombination, P:physiological process
GO:0006412    ----    ++      ++      .       .       162  protein biosynthesis, P:physiological process
GO:0006418    ---     ++      .       .       .        51  tRNA aminoacylation for protein translation, P:physiological process
GO:0006468    ++++    .       --      --      --      294  protein amino acid phosphorylation, P:physiological process
GO:0006470    +++++   ----    --      -       -        69  protein amino acid dephosphorylation, P:physiological process
GO:0006486    .       +++++   ---     .       ---      30  protein amino acid glycosylation, P:physiological process
GO:0006508    ---     +++++   .       -       .       358  proteolysis, P:physiological process
GO:0006511    ---     -       .       +++     +        55  ubiquitin-dependent protein catabolism, P:physiological process
GO:0006512    ----    -       .       +++     ++       57  ubiquitin cycle, P:physiological process
GO:0006519    -       ++++    .       -       .        13  amino acid and derivative metabolism, P:physiological process
GO:0006520    --      +++     .       .       .        46  amino acid metabolism, P:physiological process
GO:0006629    ++      +++     .       ---     --       63  lipid metabolism, P:physiological process
GO:0006730    ----    +++     .       .       .        23  one-carbon compound metabolism, P:physiological process
GO:0006816    --      ++++    .       .       .        24  calcium ion transport, P:physiological process
GO:0006817    +++++   ++      -----   -----   -----    81  phosphate transport, P:physiological process
GO:0006821    .       ++++    .       -       -         6  chloride transport, P:physiological process
GO:0006826    -       ++++    .       .       -         5  iron ion transport, P:physiological process
GO:0006879    --      +++     .       .       .         5  iron ion homeostasis, P:physiological process
GO:0007001    ++      +       .       -----   .        35  chromosome organization and biogenesis (sensu Eukaryota), P:physiological process
GO:0007018    ---     .       +       ++      +        56  microtubule-based movement, P:physiological process
GO:0007582    -----   .       +++     +++     +++     498  physiological process, P:physiological process
GO:0007606    +++++   ----    ----    ----    ----     20  sensory perception of chemical stimulus, P:physiological process
GO:0008152    .       +++     .       .       --      370  metabolism, P:physiological process
GO:0009072    ---     .       +       +       +        16  aromatic amino acid family metabolism, P:physiological process
GO:0009190    +       ---     .       .       .        26  cyclic nucleotide biosynthesis, P:physiological process
GO:0009396    --      +++++   .       .       -         7  folic acid and derivative biosynthesis, P:physiological process
GO:0015671    +++++   ---     ---     ---     ---       6  oxygen transport, P:physiological process
GO:0016042    +++++   .       --      ---     -        14  lipid catabolism, P:physiological process
GO:0016477    -----   .       +       ++      ++       55  cell migration, P:physiological process
GO:0016998    ++++    .       -       -       --        8  cell wall catabolism, P:physiological process
GO:0018987    ----    --      ++      +++     ++      101  osmoregulation, P:physiological process
GO:0019538    ----    .       +       +++     .        37  protein metabolism, P:physiological process
GO:0030001    .       +++     .       -       .        17  metal ion transport, P:physiological process
GO:0035046    ----    --      ++      +       ++       39  pronuclear migration, P:physiological process
GO:0040011    -----   .       ++      ++      ++      106  locomotion, P:physiological process
GO:0044262    +++     .       .       -       -         6  cellular carbohydrate metabolism, P:physiological process
GO:0006355    +++++   -----   --      ---     --      392  regulation of transcription, DNA-dependent, P:regulation of biological process
GO:0040010    -----   .       ++++    ++      +++     592  positive regulation of growth rate, P:regulation of biological process
GO:0040018    ----    -       .       ++      ++      222  positive regulation of body size, P:regulation of biological process
GO:0045449    ---     --      +       ++      ++      173  regulation of transcription, P:regulation of biological process
GO:0050819    --      ++      +++     -       -         6  negative regulation of coagulation, P:regulation of biological process
GO:0000003    -----   ++      ++++    +++     ++      578  reproduction, P:reproduction
GO:0007276    -----   .       ++++    ++      ++      298  gametogenesis, P:reproduction
GO:0007626    -----   -       ++++    +++     ++++    624  locomotory behavior, P:response to stimulus
GO:0007631    ---     +       ++      .       .        19  feeding behavior, P:response to stimulus
GO:0009613    +++++   --      --      --      --        2  response to other organism [alt], P:response to stimulus
GO:0018991    -----   .       ++      ++      ++      159  oviposition, P:response to stimulus
GO:0046677    ++++    +       --      --      --        4  response to antibiotic, P:response to stimulus
Over/Under   +16/-44 +23/-12 +20/-14 +24/-13 +21/-14       Relative amount of over- and under-representation in groups (not gene counts)

goterm        cele    dpul    dmel    dpse    dvir     Ng  Term and Grouping
GO:0005737    +++     .       -       -       -       230  cytoplasm, C:cell part
GO:0005743    ---     --      ++      ++      ++       42  mitochondrial inner membrane, C:cell part
GO:0016020    +++++   -----   ----    -----   -----   967  membrane, C:cell part
GO:0016021    +++++   ----    ----    ---     ---     583  integral to membrane, C:cell part
GO:0045211    +++++   .       --      ---     ---      48  postsynaptic membrane, C:cell part
GO:0005578    -       ++++    .       .       .        16  extracellular matrix (sensu Metazoa), C:extracellular matrix
GO:0005634    +++++   ----    -       .       .       786  nucleus, C:organelle
GO:0005794    +++++   -       --      --      --        4  Golgi apparatus, C:organelle
GO:0000786    +       +       +       -----   .        37  nucleosome, C:protein complex
GO:0005839    ----    --      +       +++     ++       23  proteasome core complex (sensu Eukaryota), C:protein complex
GO:0005840    ---     .       ++      .       .       130  ribosome, C:protein complex
GO:0005891    ---     ++      .       .       .         7  voltage-gated calcium channel complex, C:protein complex
GO:0008076    ++++    .       -       -       --       29  voltage-gated potassium channel complex, C:protein complex
GO:0030286    ---     --      ++      ++      ++        7  dynein complex, C:protein complex
GO:0043234    ----    ++      +       .       .        96  protein complex, C:protein complex
Over/Under   +7/-6   +3/-6   +3/-4   +3/-5   +3/-5         Relative amount of over- and under-representation in groups (not gene counts)

Developed at the Genome Informatics Lab of Indiana University Biology Department