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Index of /DroSpeGe/news/genome-summaries/gene-GO-function-association/genes6-cele5-mouse-v9g3

      Name                       Last modified       Size  Description

[DIR] Parent Directory 02-Jan-2007 17:51 - [TXT] index-brief.html 31-Dec-2006 23:09 24k [TXT] index-summary.html 31-Dec-2006 22:27 88k [TXT] genedetail-goid.txt 31-Dec-2006 20:30 366k [TXT] abbreviated-crosstab.txt 31-Dec-2006 20:30 18k [TXT] index-summary-crosstab.txt 31-Dec-2006 20:26 152k

Gene Function GO Associations in Species Genomes

Deviations in gene matches for GO categories by species genomes.

These deviations suggest where species may differ in biological function groups.
Target species genomes: C.elegans, Daphnia_pulex, Dro.mel, Dro.pse, Dro.vir
Source proteome: Mouse [version 9g3]
Gene Function Associations in Species Genomes
Deviations in gene matches for GO categories by species genomes.
Summary of table: genes6-cele5-mouse-v9g3/index-summary-crosstab.txt
Minimum Chi^2 per row: 5

goterm        cele    dpul    dmel    dpse    dvir     Ng  Term and Grouping
GO:0004601    +       +++     -       -       -        33  peroxidase activity, F:antioxidant activity
GO:0004602    +++     +++     -       --      --        5  glutathione peroxidase activity, F:antioxidant activity
GO:0003676    -       ----    +++     .       ++      471  nucleic acid binding, F:binding
GO:0005041    ++      ---     .       .       +         4  low-density lipoprotein receptor activity, F:binding
GO:0005496    +++++   -       -       -       .        26  steroid binding, F:binding
GO:0005529    ++++    --      --      +       -        74  sugar binding, F:binding
GO:0009374    .       ++++    -       -       -         4  biotin binding, F:binding
GO:0019001    ++++    -       .       -       --       17  guanyl nucleotide binding, F:binding
GO:0030151    .       ---     .       +++     .         8  molybdenum ion binding, F:binding
GO:0046872    ---     -       ++      .       +      1207  metal ion binding, F:binding
GO:0050897    .       +++     .       -       -         7  cobalt ion binding, F:binding
GO:0003796    ---     ---     +       ++      ++        5  lysozyme activity, F:catalytic activity
GO:0003810    --      +++++   -       -       -         3  protein-glutamine gamma-glutamyltransferase activity, F:catalytic activity
GO:0004016    ---     ----    ++++    ++      .        15  adenylate cyclase activity, F:catalytic activity
GO:0004062    --      ++++    -       -       .         4  aryl sulfotransferase activity, F:catalytic activity
GO:0004089    ---     +++++   --      .       .        25  carbonate dehydratase activity, F:catalytic activity
GO:0004175    .       ---     .       ++      +        34  endopeptidase activity, F:catalytic activity
GO:0004178    ---     .       .       +       +        10  leucyl aminopeptidase activity, F:catalytic activity
GO:0004179    ----    ++      .       .       +        26  membrane alanyl aminopeptidase activity, F:catalytic activity
GO:0004190    ++++    --      .       .       --       13  aspartic-type endopeptidase activity, F:catalytic activity
GO:0004194    +++++   --      .       .       --       13  pepsin A activity, F:catalytic activity
GO:0004239    --      +++     -       .       .         8  methionyl aminopeptidase activity, F:catalytic activity
GO:0004245    ++      ----    -       ++      +         8  neprilysin activity, F:catalytic activity
GO:0004252    -----   +++++   +       .       .       140  serine-type endopeptidase activity, F:catalytic activity
GO:0004263    -----   ++      ++      +       .        41  chymotrypsin activity, F:catalytic activity
GO:0004293    ---     ++      +       .       .         7  tissue kallikrein activity, F:catalytic activity
GO:0004295    -----   +++     +       +       .        41  trypsin activity, F:catalytic activity
GO:0004383    ++      ---     .       .       .        19  guanylate cyclase activity, F:catalytic activity
GO:0004435    .       +++     -       -       .         5  phosphoinositide phospholipase C activity, F:catalytic activity
GO:0004568    ----    +++     .       .       .        12  chitinase activity, F:catalytic activity
GO:0004629    .       +++     -       -       .         6  phospholipase C activity, F:catalytic activity
GO:0004713    .       +++     -       -       .       163  protein-tyrosine kinase activity, F:catalytic activity
GO:0004714    -       +++++   -       --      -        24  transmembrane receptor protein tyrosine kinase activity, F:catalytic activity
GO:0004721    +       ---     .       +       .        76  phosphoprotein phosphatase activity, F:catalytic activity
GO:0004840    .       --      -       +++     .        24  ubiquitin conjugating enzyme activity, F:catalytic activity
GO:0004842    -       ---     .       +++     +        66  ubiquitin-protein ligase activity, F:catalytic activity
GO:0005021    -       +++++   .       --      .         7  vascular endothelial growth factor receptor activity, F:catalytic activity
GO:0008132    ---     +++     ---     .       +         5  pancreatic elastase activity, F:catalytic activity
GO:0008146    ---     +++++   -       .       .        25  sulfotransferase activity, F:catalytic activity
GO:0008233    -----   +++     .       ++      +       407  peptidase activity, F:catalytic activity
GO:0008237    ---     ++      --      +       +       149  metallopeptidase activity, F:catalytic activity
GO:0008378    --      +++++   -       .       .        24  galactosyltransferase activity, F:catalytic activity
GO:0008395    +++     -       -       .       .         6  steroid hydroxylase activity, F:catalytic activity
GO:0008417    .       +++++   --      -       --       12  fucosyltransferase activity, F:catalytic activity
GO:0008499    .       +++     -       .       -        10  UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity, F:catalytic activity
GO:0008745    --      ---     .       +++     ++        4  N-acetylmuramoyl-L-alanine amidase activity, F:catalytic activity
GO:0016491    .       +++     .       --      --      504  oxidoreductase activity, F:catalytic activity
GO:0016712    +++++   -       .       --      -        35  oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen, F:catalytic activity
GO:0016740    ++      ++++    -       --      --      863  transferase activity, F:catalytic activity
GO:0016787    -----   ++      .       +       +       982  hydrolase activity, F:catalytic activity
GO:0016798    ----    +       ++      .       .        53  hydrolase activity, acting on glycosyl bonds, F:catalytic activity
GO:0016849    .       ----    +++     ++      .        28  phosphorus-oxygen lyase activity, F:catalytic activity
GO:0050381    +++     .       .       -       -        33  unspecific monooxygenase activity, F:catalytic activity
GO:0004867    .       ---     ++      +       .        57  serine-type endopeptidase inhibitor activity, F:enzyme regulator activity
GO:0001584    +       +       ---     +       -       102  rhodopsin-like receptor activity, F:signal transducer activity
GO:0003707    +++++   -       -       -       --       29  steroid hormone receptor activity, F:signal transducer activity
GO:0004879    +++++   -       -       -       -        28  ligand-dependent nuclear receptor activity, F:signal transducer activity
GO:0004890    ++++    +       --      --      -        31  GABA-A receptor activity, F:signal transducer activity
GO:0004926    --      --      .       +++     +         6  non-G-protein coupled 7TM receptor activity, F:signal transducer activity
GO:0004935    +       -       ---     ++      +        14  adrenoceptor activity, F:signal transducer activity
GO:0005070    -       -       +++     .       .         7  SH3/SH2 adaptor activity, F:signal transducer activity
GO:0008158    +++++   .       .       --      -         5  hedgehog receptor activity, F:signal transducer activity
GO:0016019    --      ---     .       +++     ++        4  peptidoglycan receptor activity, F:signal transducer activity
GO:0017154    .       --      ++++    --      .         3  semaphorin receptor activity, F:signal transducer activity
GO:0030594    ++++    +       -       ---     -        39  neurotransmitter receptor activity, F:signal transducer activity
GO:0045028    ++++    .       -       --      .         9  purinergic nucleotide receptor activity, G-protein coupled, F:signal transducer activity
GO:0005198    ++++    .       --      .       -       159  structural molecule activity, F:structural molecule activity
GO:0005201    +++++   --      --      -       --       38  extracellular matrix structural constituent, F:structural molecule activity
GO:0030020    +++++   +       ----    --      ----     38  extracellular matrix structural constituent conferring tensile strength, F:structural molecule activity
GO:0004889    +       +++     -       --      -        21  nicotinic acetylcholine-activated cation-selective channel activity, F:transporter activity
GO:0005215    ----    -       +       ++      ++      299  transporter activity, F:transporter activity
GO:0005216    ++++    .       .       --      -       170  ion channel activity, F:transporter activity
GO:0005230    +++++   +       -       ---     -        42  extracellular ligand-gated ion channel activity, F:transporter activity
GO:0005249    +++     --      +       .       -        40  voltage-gated potassium channel activity, F:transporter activity
GO:0005254    -       +++++   -       --      -         3  chloride channel activity, F:transporter activity
GO:0005272    +++++   ---     -       +       -         7  sodium channel activity, F:transporter activity
GO:0005338    ++++    .       -       --      -         3  nucleotide-sugar transporter activity, F:transporter activity
GO:0008559    +++     --      .       .       .         7  xenobiotic-transporting ATPase activity, F:transporter activity
GO:0015075    ---     --      +       +       ++       29  ion transporter activity, F:transporter activity
GO:0015114    +++++   .       -       --      --        7  phosphate transporter activity, F:transporter activity
GO:0015280    +++++   ---     --      +       -         7  amiloride-sensitive sodium channel activity, F:transporter activity
GO:0015293    ---     ++      .       +       -       101  symporter activity, F:transporter activity
GO:0015299    ++      +++     --      --      .         6  solute:hydrogen antiporter activity, F:transporter activity
GO:0015377    -       +++++   -       -       --       10  cation:chloride symporter activity, F:transporter activity
Over/Under   +31/-27 +34/-26 +9/-13  +14/-19 +6/-12        Relative amount of over- and under-representation in groups (not gene counts)

goterm        cele    dpul    dmel    dpse    dvir     Ng  Term and Grouping
GO:0007155    +++     -       -       .       .       234  cell adhesion, P:cellular process
GO:0007169    .       ++++    .       --      -        30  transmembrane receptor protein tyrosine kinase signaling pathway, P:cellular process
GO:0007214    +++++   .       -       ---     .         8  gamma-aminobutyric acid signaling pathway, P:cellular process
GO:0007286    ---     -       ++      .       ++       11  spermatid development, P:cellular process
GO:0030154    --      .       .       .       +++     192  cell differentiation, P:cellular process
GO:0030518    +++++   -       -       -       .         4  steroid hormone receptor signaling pathway, P:cellular process
GO:0001502    +++++   .       --      -       .         8  cartilage condensation, P:development
GO:0000103    --      +++++   -       --      .         5  sulfate assimilation, P:physiological process
GO:0000270    --      ++++    -       -       .         6  peptidoglycan metabolism, P:physiological process
GO:0001516    ++++    +       -       --      --        8  prostaglandin biosynthesis, P:physiological process
GO:0001539    -       --      .       .       +++       5  ciliary or flagellar motility, P:physiological process
GO:0005977    +       ---     .       +       .        21  glycogen metabolism, P:physiological process
GO:0006029    +++     .       --      .       .        10  proteoglycan metabolism, P:physiological process
GO:0006032    ----    +++     .       .       .        12  chitin catabolism, P:physiological process
GO:0006171    ---     ----    ++++    ++      .        15  cAMP biosynthesis, P:physiological process
GO:0006182    ++++    --      .       .       .        15  cGMP biosynthesis, P:physiological process
GO:0006486    .       +++++   --      -       ---      26  protein amino acid glycosylation, P:physiological process
GO:0006508    -----   ++++    .       +       .       392  proteolysis, P:physiological process
GO:0006511    --      ---     .       +++     +        76  ubiquitin-dependent protein catabolism, P:physiological process
GO:0006631    +++     .       .       --      .        55  fatty acid metabolism, P:physiological process
GO:0006730    ---     +++++   -       .       -        38  one-carbon compound metabolism, P:physiological process
GO:0006783    ---     ++      .       .       .         9  heme biosynthesis, P:physiological process
GO:0006817    +++++   ++      ----    ---     -----    49  phosphate transport, P:physiological process
GO:0006821    +++     +++++   ---     ----    --       40  chloride transport, P:physiological process
GO:0006897    +++++   --      -       -       .        72  endocytosis, P:physiological process
GO:0006979    ++      +++     -       --      -        32  response to oxidative stress, P:physiological process
GO:0007010    +++     -       .       -       .        57  cytoskeleton organization and biogenesis, P:physiological process
GO:0007586    --      +++     -       +       .        14  digestion, P:physiological process
GO:0009190    .       ----    +++     ++      .        28  cyclic nucleotide biosynthesis, P:physiological process
GO:0009253    --      ---     .       +++     ++        4  peptidoglycan catabolism, P:physiological process
GO:0009312    .       +++     --      .       -         9  oligosaccharide biosynthesis, P:physiological process
GO:0015695    ---     -       +       +       +         5  organic cation transport, P:physiological process
GO:0015780    ++++    .       -       --      -         3  nucleotide-sugar transport, P:physiological process
GO:0018149    --      +++++   -       -       -         3  peptide cross-linking, P:physiological process
GO:0018298    --      ++++    --      .       -        10  protein-chromophore linkage, P:physiological process
GO:0019395    +++     .       .       .       -         5  fatty acid oxidation, P:physiological process
GO:0030198    +       +++     -       -       -        13  extracellular matrix organization and biogenesis, P:physiological process
GO:0030199    +++++   -       --      -       .         5  collagen fibril organization, P:physiological process
GO:0030574    --      ++++    .       -       .         8  collagen catabolism, P:physiological process
GO:0042744    .       ++++    --      --      .        10  hydrogen peroxide catabolism, P:physiological process
GO:0046777    +++     .       .       --      -        10  protein amino acid autophosphorylation, P:physiological process
GO:0050974    .       --      -       +++     .         6  detection of mechanical stimulus during sensory perception, P:physiological process
GO:0051260    .       +++     --      -       -         7  protein homooligomerization, P:physiological process
GO:0051325    +++     .       .       .       --       10  interphase, P:physiological process
GO:0048066    -       .       +++     .       -        11  pigmentation during development, P:pigmentation
GO:0007190    --      ----    +++     +++     .        16  adenylate cyclase activation, P:regulation of biological process
GO:0009968    ---     ++      .       .       .        21  negative regulation of signal transduction, P:regulation of biological process
GO:0045665    ---     -       +       ++      +        12  negative regulation of neuron differentiation, P:regulation of biological process
GO:0045944    +++     .       -       --      .        73  positive regulation of transcription from RNA polymerase II promoter, P:regulation of biological process
GO:0046324    .       +++     --      .       .         4  regulation of glucose import, P:regulation of biological process
GO:0006954    --      ++++    -       .       .        31  inflammatory response, P:response to stimulus
GO:0042742    --      ---     ++      ++      ++        8  defense response to bacterium, P:response to stimulus
Over/Under   +19/-21 +22/-11 +6/-11  +8/-12  +5/-5         Relative amount of over- and under-representation in groups (not gene counts)

goterm        cele    dpul    dmel    dpse    dvir     Ng  Term and Grouping
GO:0005624    +++     .       -       .       .       157  membrane fraction, C:cell part
GO:0005792    ++++    ---     .       -       .       129  microsome, C:cell part
GO:0005929    ----    --      +       ++      ++       20  cilium, C:cell part
GO:0019867    --      ---     +       +++     .        34  outer membrane, C:cell part
GO:0030425    -       ---     +++     .       .        14  dendrite, C:cell part
GO:0046581    ++      ----    .       .       .        15  intercellular canaliculus, C:cell part
GO:0005581    +++++   ++      ----    --      ----     40  collagen, C:extracellular matrix part
GO:0005578    +++++   +       ----    --      -       126  extracellular matrix (sensu Metazoa), C:extracellular matrix
GO:0005634    --      ---     +++     .       ++     1783  nucleus, C:organelle
GO:0005694    ++      +       .       ---     .        67  chromosome, C:organelle
GO:0005783    +++     --      .       .       .       387  endoplasmic reticulum, C:organelle
GO:0005794    ++++    .       .       --      -        88  Golgi apparatus, C:organelle
GO:0016023    ---     +       .       .       +        43  cytoplasmic membrane-bound vesicle, C:organelle
GO:0000786    .       +       +       -----   +        29  nucleosome, C:protein complex
GO:0005858    --      --      .       .       +++      11  axonemal dynein complex, C:protein complex
GO:0008076    ++++    -       .       .       --       26  voltage-gated potassium channel complex, C:protein complex
GO:0016459    ++      ---     .       .       .        28  myosin complex, C:protein complex
GO:0030286    --      ----    +       ++      ++       25  dynein complex, C:protein complex
GO:0030529    .       ---     ++      .       .       194  ribonucleoprotein complex, C:protein complex
GO:0045202    -       ---     ++      .       +        45  synapse, C:synapse
Over/Under   +10/-6  +1/-12  +4/-2   +3/-5   +4/-2         Relative amount of over- and under-representation in groups (not gene counts)

Developed at the Genome Informatics Lab of Indiana University Biology Department