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Index of /DroSpeGe/news/genome-summaries/gene-GO-function-association/genes6-cele5-fruitfly-v9g3

      Name                       Last modified       Size  Description

[DIR] Parent Directory 02-Jan-2007 17:51 - [TXT] index-brief.html 31-Dec-2006 23:09 33k [TXT] index-summary.html 31-Dec-2006 22:27 91k [TXT] genedetail-goid.txt 31-Dec-2006 20:30 356k [TXT] abbreviated-crosstab.txt 31-Dec-2006 20:30 24k [TXT] index-summary-crosstab.txt 31-Dec-2006 20:13 160k

Gene Function GO Associations in Species Genomes

Deviations in gene matches for GO categories by species genomes.

These deviations suggest where species may differ in biological function groups.
Target species genomes: C.elegans, Daphnia_pulex, Dro.mel, Dro.pse, Dro.vir
Source proteome: Fruitfly [version 9g3]
Gene Function Associations in Species Genomes
Deviations in gene matches for GO categories by species genomes.
Summary of table: genes6-cele5-fruitfly-v9g3/index-summary-crosstab.txt
Minimum Chi^2 per row: 5

goterm        cele    dpul    dmel    dpse    dvir     Ng  Term and Grouping
GO:0005554    -----   -----   +++++   +++++   ++++    434  molecular_function unknown, F:
GO:0004601    ++      +++     -       -       -        34  peroxidase activity, F:antioxidant activity
GO:0004602    ++++    .       .       --      --       10  glutathione peroxidase activity, F:antioxidant activity
GO:0000166    ++++    ++++    --      --      --      168  nucleotide binding, F:binding
GO:0005179    ---     --      +       +       .        21  hormone activity, F:binding
GO:0005184    ---     -       +       +       ++       22  neuropeptide hormone activity, F:binding
GO:0005506    .       ++++    --      .       -        38  iron ion binding, F:binding
GO:0005524    +++++   +++++   ----    ----    ----    751  ATP binding, F:binding
GO:0005525    ++++    +       --      -       .       173  GTP binding, F:binding
GO:0005534    -       --      ++      +++     -         7  galactose binding, F:binding
GO:0005549    -----   -----   +++++   +++++   ++++     68  odorant binding, F:binding
GO:0008083    ---     +       .       .       +        29  growth factor activity, F:binding
GO:0008431    ---     +++++   .       .       -        10  vitamin E binding, F:binding
GO:0042834    ---     ---     ++      ++      +         8  peptidoglycan binding, F:binding
GO:0048029    +++     -       .       .       .         7  monosaccharide binding, F:binding
GO:0050660    ---     ++++    -       .       .        15  FAD binding, F:binding
GO:0000163    +++     ---     .       .       .        12  protein phosphatase type 1 activity, F:catalytic activity
GO:0003796    ---     ---     .       +++     ++        8  lysozyme activity, F:catalytic activity
GO:0003840    ++      +++     --      -       .         6  gamma-glutamyltransferase activity, F:catalytic activity
GO:0004089    --      +++++   -       .       -        18  carbonate dehydratase activity, F:catalytic activity
GO:0004179    .       +++++   -       --      --       27  membrane alanyl aminopeptidase activity, F:catalytic activity
GO:0004192    +++++   .       -       -       --        7  cathepsin D activity, F:catalytic activity
GO:0004194    +++++   ---     -       .       --       14  pepsin A activity, F:catalytic activity
GO:0004197    +++++   .       -       --      -        78  cysteine-type endopeptidase activity, F:catalytic activity
GO:0004222    ++++    +       --      -       -        60  metalloendopeptidase activity, F:catalytic activity
GO:0004238    +       +++++   --      --      -         7  meprin A activity, F:catalytic activity
GO:0004252    -----   +++     ++      .       +       152  serine-type endopeptidase activity, F:catalytic activity
GO:0004263    -----   +++++   +++     .       .       159  chymotrypsin activity, F:catalytic activity
GO:0004295    -----   ++++    ++++    +       .       174  trypsin activity, F:catalytic activity
GO:0004383    +++     -       .       .       -        28  guanylate cyclase activity, F:catalytic activity
GO:0004467    .       +++++   --      -       --       12  long-chain-fatty-acid-CoA ligase activity, F:catalytic activity
GO:0004485    .       +++++   -       -       -         4  methylcrotonoyl-CoA carboxylase activity, F:catalytic activity
GO:0004497    +       ++++    --      -       -       100  monooxygenase activity, F:catalytic activity
GO:0004568    ---     ++++    -       .       .        20  chitinase activity, F:catalytic activity
GO:0004656    ---     .       .       ++++    -        17  procollagen-proline 4-dioxygenase activity, F:catalytic activity
GO:0004672    +++++   ++      ---     --      --      145  protein kinase activity, F:catalytic activity
GO:0004674    +++++   +       --      --      -       168  protein serine/threonine kinase activity, F:catalytic activity
GO:0004714    .       ++++    .       --      .        35  transmembrane receptor protein tyrosine kinase activity, F:catalytic activity
GO:0004722    ++++    --      -       .       .        37  protein serine/threonine phosphatase activity, F:catalytic activity
GO:0004806    --      ++++    -       .       -        39  triacylglycerol lipase activity, F:catalytic activity
GO:0005395    ++++    +++     --      -       -         7  eye pigment precursor transporter activity, F:catalytic activity
GO:0008146    ---     +++++   -       -       .        23  sulfotransferase activity, F:catalytic activity
GO:0008376    --      ++++    --      -       .         8  acetylgalactosaminyltransferase activity, F:catalytic activity
GO:0008378    .       ++++    --      -       .        10  galactosyltransferase activity, F:catalytic activity
GO:0008483    +       ++++    --      -       -        21  transaminase activity, F:catalytic activity
GO:0008533    ++      +++++   ---     --      --       20  astacin activity, F:catalytic activity
GO:0008745    ---     ---     ++      ++      +         8  N-acetylmuramoyl-L-alanine amidase activity, F:catalytic activity
GO:0015020    +++++   ---     -       -       .        35  glucuronosyltransferase activity, F:catalytic activity
GO:0015036    +++     +       .       -       --       14  disulfide oxidoreductase activity, F:catalytic activity
GO:0016207    .       --      .       .       +++       4  4-coumarate-CoA ligase activity, F:catalytic activity
GO:0016229    +++     +++     -       --      --       10  steroid dehydrogenase activity, F:catalytic activity
GO:0016274    --      -       .       +++     .         7  protein-arginine N-methyltransferase activity, F:catalytic activity
GO:0016401    ++++    .       --      --      .         6  palmitoyl-CoA oxidase activity, F:catalytic activity
GO:0016491    +       +++++   --      -       --      280  oxidoreductase activity, F:catalytic activity
GO:0016511    +++++   --      .       -       .        12  endothelin-converting enzyme activity, F:catalytic activity
GO:0016614    ++      +++     --      -       -        40  oxidoreductase activity, acting on CH-OH group of donors, F:catalytic activity
GO:0016620    +++     ++      .       -       -        10  oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, F:catalytic activity
GO:0016709    +++     .       .       --      --       11  oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen, F:catalytic activity
GO:0016747    +++     ++      --      --      .        12  transferase activity, transferring groups other than amino-acyl groups, F:catalytic activity
GO:0016757    .       +++     --      .       .        39  transferase activity, transferring glycosyl groups, F:catalytic activity
GO:0016799    --      ++++    .       .       .        44  hydrolase activity, hydrolyzing N-glycosyl compounds, F:catalytic activity
GO:0016919    .       -       -       ++++    -         3  nardilysin activity, F:catalytic activity
GO:0017051    --      +++++   -       -       -         3  retinol dehydratase activity, F:catalytic activity
GO:0042626    ++++    +++++   ---     ---     ---      71  ATPase activity, coupled to transmembrane movement of substances, F:catalytic activity
GO:0042708    ---     -       .       +       ++        9  elastase activity, F:catalytic activity
GO:0046920    .       +++++   --      .       -         8  alpha(1,3)-fucosyltransferase activity, F:catalytic activity
GO:0004867    ++++    --      .       .       -        69  serine-type endopeptidase inhibitor activity, F:enzyme regulator activity
GO:0008605    -       -       +++     .       .         3  protein kinase CK2 regulator activity, F:enzyme regulator activity
GO:0030414    +++     --      -       .       .         9  protease inhibitor activity, F:enzyme regulator activity
GO:0004872    +++++   +       --      -       -       149  receptor activity, F:signal transducer activity
GO:0004890    +++++   .       -       --      -        15  GABA-A receptor activity, F:signal transducer activity
GO:0004983    +++     ++      --      -       -        11  neuropeptide Y receptor activity, F:signal transducer activity
GO:0004984    -----   -----   +++     +++++   +++      40  olfactory receptor activity, F:signal transducer activity
GO:0004995    ++      ++++    --      -       -        10  tachykinin receptor activity, F:signal transducer activity
GO:0008020    --      +++++   --      -       -        11  G-protein coupled photoreceptor activity, F:signal transducer activity
GO:0008188    +++     +++     --      -       -        54  neuropeptide receptor activity, F:signal transducer activity
GO:0008527    -----   -----   ++++    ++++    +++      35  taste receptor activity, F:signal transducer activity
GO:0015464    ++++    ++      -       ---     -        16  acetylcholine receptor activity, F:signal transducer activity
GO:0003735    +++     -       -       .       .       178  structural constituent of ribosome, F:structural molecule activity
GO:0005201    +++     +       --      .       .        15  extracellular matrix structural constituent, F:structural molecule activity
GO:0005213    --      ---     +       ++      +         5  structural constituent of chorion (sensu Insecta), F:structural molecule activity
GO:0005214    ----    ++      -       +       .        38  structural constituent of cuticle (sensu Insecta), F:structural molecule activity
GO:0008010    -----   +       .       +       +        33  structural constituent of larval cuticle (sensu Insecta), F:structural molecule activity
GO:0042302    ----    +++++   .       .       .        18  structural constituent of cuticle, F:structural molecule activity
GO:0030528    --      ---     .       ++      ++      223  transcription regulator activity, F:transcription regulator activity
GO:0004889    +++++   +       -       ---     -        18  nicotinic acetylcholine-activated cation-selective channel activity, F:transporter activity
GO:0005249    ++++    +       .       -       --       34  voltage-gated potassium channel activity, F:transporter activity
GO:0005253    .       ++++    -       .       --       14  anion channel activity, F:transporter activity
GO:0005254    +++     ++      -       -       -        17  chloride channel activity, F:transporter activity
GO:0005272    ---     .       .       +       +        18  sodium channel activity, F:transporter activity
GO:0008507    ---     --      +       +       +         7  sodium:iodide symporter activity, F:transporter activity
GO:0015114    +++++   -       -       -       .        11  phosphate transporter activity, F:transporter activity
GO:0015239    +++++   --      --      -       .         9  multidrug transporter activity, F:transporter activity
GO:0015291    ++++    --      .       .       .         8  porter activity, F:transporter activity
GO:0015377    .       +++++   -       --      -         9  cation:chloride symporter activity, F:transporter activity
GO:0015381    .       ++++    -       -       -        11  high affinity sulfate permease activity, F:transporter activity
GO:0015450    .       --      -       +++     .        24  protein translocase activity, F:transporter activity
GO:0015646    ++++    +++     --      -       --        5  permease activity, F:transporter activity
Over/Under   +45/-33 +48/-23 +11/-31 +14/-19 +9/-17        Relative amount of over- and under-representation in groups (not gene counts)

goterm        cele    dpul    dmel    dpse    dvir     Ng  Term and Grouping
GO:0016065    -       --      +++     +       --        2  , :
Over/Under   +0/-0   +0/-1   +1/-0   +0/-0   +0/-1         Relative amount of over- and under-representation in groups (not gene counts)

goterm        cele    dpul    dmel    dpse    dvir     Ng  Term and Grouping
GO:0000004    -----   -----   +++++   +++++   +++     400  biological_process unknown, P:
GO:0000165    +++     -       -       .       .        76  MAPKKK cascade, P:cellular process
GO:0007169    .       +++     .       --      -        45  transmembrane receptor protein tyrosine kinase signaling pathway, P:cellular process
GO:0007217    ++      +++     --      -       -         9  tachykinin signaling pathway, P:cellular process
GO:0007218    ---     -       .       +       +        23  neuropeptide signaling pathway, P:cellular process
GO:0007270    +++++   +       --      ---     -        57  nerve-nerve synaptic transmission, P:cellular process
GO:0007274    +++     +       -       -       -        39  neuromuscular synaptic transmission, P:cellular process
GO:0046845    ++++    .       --      -       .        12  branched duct epithelial cell fate determination (sensu Insecta), P:cellular process
GO:0001737    ++++    --      -       .       .        14  establishment of wing hair orientation, P:development
GO:0007164    +++     .       --      .       .         8  establishment of tissue polarity, P:development
GO:0007447    +++     +       --      .       .        21  imaginal disc pattern formation, P:development
GO:0007530    ---     ---     ++      +       ++       42  sex determination, P:development
GO:0035151    ++++    --      .       .       .        14  regulation of tracheal tube size, P:development
GO:0050774    --      -       ++++    .       -         3  negative regulation of dendrite morphogenesis, P:development
GO:0006036    -       +++++   -       -       .         5  cuticle chitin catabolism, P:physiological process
GO:0006118    +++     ++++    ---     -       -       284  electron transport, P:physiological process
GO:0006182    ++++    .       .       .       -         5  cGMP biosynthesis, P:physiological process
GO:0006334    +++     .       .       ---     .        40  nucleosome assembly, P:physiological process
GO:0006366    --      ---     .       ++      ++      168  transcription from RNA polymerase II promoter, P:physiological process
GO:0006399    .       ++++    --      .       -        17  tRNA metabolism, P:physiological process
GO:0006468    +++++   ++      --      --      -       309  protein amino acid phosphorylation, P:physiological process
GO:0006470    ++++    ---     .       .       .        79  protein amino acid dephosphorylation, P:physiological process
GO:0006486    ++      +++++   ---     -       --       82  protein amino acid glycosylation, P:physiological process
GO:0006508    .       +++     .       .       --      668  proteolysis, P:physiological process
GO:0006520    +++     ++++    --      -       --      126  amino acid metabolism, P:physiological process
GO:0006551    .       ++++    -       -       -         7  leucine metabolism, P:physiological process
GO:0006626    .       -       -       +++     .        31  protein targeting to mitochondrion, P:physiological process
GO:0006633    +       +++     --      .       -        34  fatty acid biosynthesis, P:physiological process
GO:0006635    +++     +++     --      --      -        29  fatty acid beta-oxidation, P:physiological process
GO:0006694    +++     ++      -       -       -        10  steroid biosynthesis, P:physiological process
GO:0006726    ++++    ++      --      -       -        14  eye pigment biosynthesis, P:physiological process
GO:0006727    +++     +       --      .       -        20  ommochrome biosynthesis, P:physiological process
GO:0006730    -       +++++   -       .       --       24  one-carbon compound metabolism, P:physiological process
GO:0006783    -       +++     .       .       .         9  heme biosynthesis, P:physiological process
GO:0006796    +++++   -       -       .       .        44  phosphate metabolism, P:physiological process
GO:0006812    ++++    +       --      --      .       272  cation transport, P:physiological process
GO:0006813    +++++   .       -       --      -        73  potassium ion transport, P:physiological process
GO:0006817    +++++   .       ---     -       .        56  phosphate transport, P:physiological process
GO:0006820    ++++    ++      -       --      --       58  anion transport, P:physiological process
GO:0006821    .       +++++   -       --      -        15  chloride transport, P:physiological process
GO:0006836    --      +++     .       .       .        23  neurotransmitter transport, P:physiological process
GO:0006856    ++++    ++      --      -       -         8  eye pigment precursor transport, P:physiological process
GO:0006869    .       ++++    -       -       --       65  lipid transport, P:physiological process
GO:0006936    ++++    .       .       --      .       110  muscle contraction, P:physiological process
GO:0006955    ---     -       +       .       +        44  immune response, P:physiological process
GO:0006960    ---     --      .       ++      +        13  antimicrobial humoral response (sensu Protostomia), P:physiological process
GO:0006961    -       ---     .       +       ++       18  antibacterial humoral response (sensu Protostomia), P:physiological process
GO:0006979    ++++    ++      --      -       -        22  response to oxidative stress, P:physiological process
GO:0007010    +++     .       .       --      -       215  cytoskeleton organization and biogenesis, P:physiological process
GO:0007594    --      --      ++++    .       -         3  puparial adhesion, P:physiological process
GO:0007600    .       +++     --      .       .        24  sensory perception, P:physiological process
GO:0007601    -       ++++    -       .       -        66  visual perception, P:physiological process
GO:0007606    ----    -----   ++++    ++      +        19  sensory perception of chemical stimulus, P:physiological process
GO:0007608    -----   -----   ++      ++++    ++       53  sensory perception of smell, P:physiological process
GO:0008202    +++++   .       --      --      -       105  steroid metabolism, P:physiological process
GO:0008283    ---     --      +       +       +++     238  cell proliferation, P:physiological process
GO:0008363    --      -       .       +++     +         3  larval cuticle biosynthesis (sensu Insecta), P:physiological process
GO:0008652    .       +++     .       -       --       46  amino acid biosynthesis, P:physiological process
GO:0009069    .       +++     -       .       -         6  serine family amino acid metabolism, P:physiological process
GO:0009166    ---     .       -       .       ++++     10  nucleotide catabolism, P:physiological process
GO:0009247    --      ++++    --      -       +         6  glycolipid biosynthesis, P:physiological process
GO:0009253    ---     ---     ++      ++      +         8  peptidoglycan catabolism, P:physiological process
GO:0015711    +++     -       -       .       .         9  organic anion transport, P:physiological process
GO:0015893    +++++   --      .       -       -        12  drug transport, P:physiological process
GO:0016082    .       ++++    -       --      .        14  synaptic vesicle priming, P:physiological process
GO:0018401    ---     .       .       +++     -        15  peptidyl-proline hydroxylation to 4-hydroxy-L-proline, P:physiological process
GO:0030431    .       +++     .       -       -         9  sleep, P:physiological process
GO:0042445    .       +++     .       -       --        4  hormone metabolism, P:physiological process
GO:0046701    .       +++     .       -       --        4  insecticide catabolism, P:physiological process
GO:0050909    ----    -----   ++++    ++      ++       45  sensory perception of taste, P:physiological process
GO:0006357    -       ---     .       .       +++     502  regulation of transcription from RNA polymerase II promoter, P:regulation of biological process
GO:0007088    ++++    -       --      .       .        27  regulation of mitosis, P:regulation of biological process
GO:0009794    +++     -       .       .       .         8  regulation of progression through embryonic mitotic cell cycle, P:regulation of biological process
GO:0009889    .       +++     --      .       .         5  regulation of biosynthesis, P:regulation of biological process
GO:0042058    -       +++++   -       -       -         4  regulation of epidermal growth factor receptor signaling pathway, P:regulation of biological process
GO:0045187    --      ++++    .       -       -        10  regulation of circadian sleep/wake cycle, sleep, P:regulation of biological process
GO:0045946    ++++    .       .       -       -        10  positive regulation of translation, P:regulation of biological process
GO:0007283    .       ---     +++     .       .        65  spermatogenesis, P:reproduction
GO:0046843    ++++    +       -       --      -        21  dorsal appendage formation, P:reproduction
GO:0007602    -       +++     .       -       -        37  phototransduction, P:response to stimulus
GO:0009636    +++++   -       .       --      -       123  response to toxin, P:response to stimulus
GO:0019236    --      ---     +       ++      ++        7  response to pheromone, P:response to stimulus
GO:0042221    .       --      +++     -       .        25  response to chemical stimulus, P:response to stimulus
GO:0042742    ----    ----    .       ++++    +++      31  defense response to bacterium, P:response to stimulus
GO:0045087    ----    .       ++      +       .        19  innate immune response, P:response to stimulus
GO:0045297    -       --      ++++    .       -         3  post-mating behavior, P:response to stimulus
GO:0045433    ---     .       ++      .       .        13  male courtship behavior (sensu Insecta), song production, P:response to stimulus
GO:0046692    --      ---     .       +       ++        7  sperm competition, P:response to stimulus
GO:0050829    ----    -       +       ++      .        13  defense response to Gram-negative bacterium, P:response to stimulus
GO:0050830    ---     --      +       ++      +        13  defense response to Gram-positive bacterium, P:response to stimulus
GO:0050832    ---     .       .       +       +         7  defense response to fungus, P:response to stimulus
Over/Under   +37/-27 +35/-23 +13/-23 +14/-15 +12/-9        Relative amount of over- and under-representation in groups (not gene counts)

goterm        cele    dpul    dmel    dpse    dvir     Ng  Term and Grouping
GO:0008372    -----   -----   +++++   +++++   +++     490  cellular_component unknown, C:
GO:0005737    ++++    +       --      .       .       455  cytoplasm, C:cell part
GO:0005792    +       ++++    --      --      .        87  microsome, C:cell part
GO:0005829    ++++    .       -       --      .        71  cytosol, C:cell part
GO:0005834    +++     .       .       --      .        25  heterotrimeric G-protein complex, C:cell part
GO:0005886    ++      +++     -       -       --      321  plasma membrane, C:cell part
GO:0016020    ++++    ++++    ---     --      --      587  membrane, C:cell part
GO:0017090    +       +++++   --      --      -         7  meprin A complex, C:cell part
GO:0045211    +++++   +       --      ---     --       36  postsynaptic membrane, C:cell part
GO:0005576    -----   --      +       ++++    +++     263  extracellular region, C:extracellular region
GO:0005634    --      ----    .       ++      +++    1165  nucleus, C:organelle
GO:0005739    ++++    +       --      .       -       163  mitochondrion, C:organelle
GO:0000164    ++++    --      --      .       .         7  protein phosphatase type 1 complex, C:protein complex
GO:0000786    +++     .       .       ----    +        30  nucleosome, C:protein complex
GO:0005892    +++++   +       -       ---     -        18  nicotinic acetylcholine-gated receptor-channel complex, C:protein complex
GO:0008076    +++     +       .       -       --       27  voltage-gated potassium channel complex, C:protein complex
GO:0016222    ---     .       -       ++++    -        17  procollagen-proline, 2-oxoglutarate-4-dioxygenase complex, C:protein complex
GO:0030286    ---     ---     .       +++     +        23  dynein complex, C:protein complex
GO:0043190    .       +++++   --      --      --       56  ATP-binding cassette (ABC) transporter complex, C:protein complex
Over/Under   +11/-5  +5/-5   +1/-8   +5/-9   +3/-5         Relative amount of over- and under-representation in groups (not gene counts)

Developed at the Genome Informatics Lab of Indiana University Biology Department