##gff-version   3
#
#species: Drosophila_melanogaster
#assembly-id: DrosMel release 5 (April 2006)
#annotation-group-id: DGIL_
#algorithm: DGIL_AUG30 = Augustus-Affy modEncode transfrag gene calls, run id 30
#  using Augustus gene predictor (v 2.0.2) * modified for fuzzy transfrag locations
#evidence-data:
#  Augustus HMM is trained on 500K Dmel EST assembled with PASA (March 2008), 
#     http://insects.eugenes.org/species/data/dmel5/PASA_EST/
#  Gene calls were forced to match 1,001,098  transfrag locations from 21 cell lines  
#    (38bp-arrays, March 2008, modENCODE from transcriptome.affymetrix.com )
#    version bandwidth50_maxgap90_minrun50/tf_*_Dro2_*_50_90_50.bed
#  and from 12 development time groups 
#  (Manak_et_al/transfrags.bw50.mr90.mg50.dm3/Dro_Total_*.dm3.bw50.mr90.mg50.bed). 
#data-source: http://insects.eugenes.org/DroSpeGe/data/dmel5/modencode/
#         : ftp://eugenes.org/eugenes/genomes/dmel5/modencode/
#file     : dmel5-augmap30an.gff
#authors: Don Gilbert, gilbertd AT indiana.edu
#more-info: http://insects.eugenes.org/DroSpeGe/data/dmel3/modencode/
#date: 20080505 ; doc updated 20080708
#
#annotation fields :
#   tf= transfrag overlap for Affymetrix modENCODE and Manak tiles, with treatment group ID
#       (mkAS1 = Manak Dro_Total_AS_1_B1; tf564 = Affy transfrag 564 Dro2_AS_GM2)
#   xid= known, reference exon overlap (FB DrosMel r5.5), with gene ID
#   est= EST overlap with GenBank ID
#   prot= Protein homology (GenBank ID/taxonid/description of best hit to NCBI NR BlastP)
#   pred= NCBI Gnomon CAF1 predicted exon overlap
#   te= transposable element overlap (FB DrosMel r5.5), with TE ID
#   pct_support= Augustus percent support of model from evidence
#   evd_fTF, evd_pTF= Augustus evidence from transfrags (see tf=)
#   evd_fE, evd_pE= Augustus evidence from cDNA/EST PASA assemblies 
#   
# Annotation overlap criteria of 50% bases is used but for EST overlap of 80%.
#